Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18450 and BPHYT_RS18455 are separated by 471 nucleotides BPHYT_RS18455 and BPHYT_RS18460 are separated by 13 nucleotides
BPHYT_RS18450: BPHYT_RS18450 - voltage-gated chloride channel protein, at 4,146,190 to 4,147,500
_RS18450
BPHYT_RS18455: BPHYT_RS18455 - arsenic resistance operon repressor, at 4,147,972 to 4,148,337
_RS18455
BPHYT_RS18460: BPHYT_RS18460 - arsenic transporter ATPase, at 4,148,351 to 4,150,105
_RS18460
Position (kb) 4147
4148
4149 Strain fitness (log2 ratio) -1
0
1 at 4146.997 kb on + strand, within BPHYT_RS18450 at 4147.057 kb on + strand, within BPHYT_RS18450 at 4147.102 kb on + strand, within BPHYT_RS18450 at 4147.180 kb on + strand, within BPHYT_RS18450 at 4147.215 kb on + strand, within BPHYT_RS18450 at 4147.215 kb on + strand, within BPHYT_RS18450 at 4147.216 kb on - strand, within BPHYT_RS18450 at 4147.273 kb on + strand, within BPHYT_RS18450 at 4147.482 kb on + strand at 4147.482 kb on + strand at 4147.588 kb on - strand at 4147.588 kb on - strand at 4147.672 kb on - strand at 4147.702 kb on + strand at 4147.723 kb on + strand at 4147.723 kb on + strand at 4147.724 kb on - strand at 4147.766 kb on + strand at 4147.766 kb on + strand at 4147.872 kb on - strand at 4147.872 kb on - strand at 4148.059 kb on - strand, within BPHYT_RS18455 at 4148.196 kb on - strand, within BPHYT_RS18455 at 4148.228 kb on + strand, within BPHYT_RS18455 at 4148.229 kb on - strand, within BPHYT_RS18455 at 4148.230 kb on + strand, within BPHYT_RS18455 at 4148.287 kb on - strand, within BPHYT_RS18455 at 4148.350 kb on + strand at 4148.351 kb on - strand at 4148.351 kb on - strand at 4148.368 kb on + strand at 4148.432 kb on - strand at 4148.756 kb on + strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.757 kb on - strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.906 kb on + strand, within BPHYT_RS18460 at 4148.907 kb on - strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.120 kb on + strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.121 kb on - strand, within BPHYT_RS18460 at 4149.124 kb on + strand, within BPHYT_RS18460 at 4149.124 kb on + strand, within BPHYT_RS18460 at 4149.125 kb on - strand, within BPHYT_RS18460
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,146,997 + BPHYT_RS18450 0.62 +0.6 4,147,057 + BPHYT_RS18450 0.66 +0.1 4,147,102 + BPHYT_RS18450 0.70 +0.4 4,147,180 + BPHYT_RS18450 0.76 -0.4 4,147,215 + BPHYT_RS18450 0.78 +0.3 4,147,215 + BPHYT_RS18450 0.78 -0.1 4,147,216 - BPHYT_RS18450 0.78 +0.4 4,147,273 + BPHYT_RS18450 0.83 -0.4 4,147,482 + -0.2 4,147,482 + +1.0 4,147,588 - +0.3 4,147,588 - +0.1 4,147,672 - +0.2 4,147,702 + -0.3 4,147,723 + +0.4 4,147,723 + +0.6 4,147,724 - -1.0 4,147,766 + +0.8 4,147,766 + +0.3 4,147,872 - -0.5 4,147,872 - +0.2 4,148,059 - BPHYT_RS18455 0.24 +0.3 4,148,196 - BPHYT_RS18455 0.61 -0.5 4,148,228 + BPHYT_RS18455 0.70 +0.4 4,148,229 - BPHYT_RS18455 0.70 +0.1 4,148,230 + BPHYT_RS18455 0.70 +0.4 4,148,287 - BPHYT_RS18455 0.86 +0.7 4,148,350 + -1.2 4,148,351 - -0.6 4,148,351 - -0.7 4,148,368 + -0.5 4,148,432 - +0.7 4,148,756 + BPHYT_RS18460 0.23 +0.4 4,148,757 - BPHYT_RS18460 0.23 +0.3 4,148,757 - BPHYT_RS18460 0.23 +0.4 4,148,757 - BPHYT_RS18460 0.23 +1.1 4,148,757 - BPHYT_RS18460 0.23 +0.1 4,148,757 - BPHYT_RS18460 0.23 +0.7 4,148,906 + BPHYT_RS18460 0.32 +1.0 4,148,906 + BPHYT_RS18460 0.32 +0.2 4,148,906 + BPHYT_RS18460 0.32 -0.3 4,148,906 + BPHYT_RS18460 0.32 +0.2 4,148,906 + BPHYT_RS18460 0.32 +0.5 4,148,907 - BPHYT_RS18460 0.32 +0.0 4,149,120 + BPHYT_RS18460 0.44 +0.2 4,149,120 + BPHYT_RS18460 0.44 +1.0 4,149,120 + BPHYT_RS18460 0.44 +0.7 4,149,121 - BPHYT_RS18460 0.44 +0.4 4,149,121 - BPHYT_RS18460 0.44 +0.2 4,149,121 - BPHYT_RS18460 0.44 +0.8 4,149,124 + BPHYT_RS18460 0.44 +0.3 4,149,124 + BPHYT_RS18460 0.44 +0.3 4,149,125 - BPHYT_RS18460 0.44 +0.1
Or see this region's nucleotide sequence