Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11140

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11135 and BPHYT_RS11140 are separated by 169 nucleotidesBPHYT_RS11140 and BPHYT_RS11145 are separated by 20 nucleotides BPHYT_RS11135: BPHYT_RS11135 - LysR family transcriptional regulator, at 2,530,595 to 2,531,455 _RS11135 BPHYT_RS11140: BPHYT_RS11140 - major facilitator transporter, at 2,531,625 to 2,533,025 _RS11140 BPHYT_RS11145: BPHYT_RS11145 - short-chain dehydrogenase, at 2,533,046 to 2,533,819 _RS11145 Position (kb) 2531 2532 2533 2534Strain fitness (log2 ratio) -1 0 1 2 3at 2531.537 kb on + strandat 2531.538 kb on - strandat 2531.742 kb on + strandat 2531.909 kb on + strand, within BPHYT_RS11140at 2531.910 kb on - strand, within BPHYT_RS11140at 2532.156 kb on + strand, within BPHYT_RS11140at 2532.621 kb on - strand, within BPHYT_RS11140at 2533.847 kb on - strandat 2533.979 kb on - strandat 2533.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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2,531,537 + -0.3
2,531,538 - +0.5
2,531,742 + +0.8
2,531,909 + BPHYT_RS11140 0.20 +0.6
2,531,910 - BPHYT_RS11140 0.20 -1.4
2,532,156 + BPHYT_RS11140 0.38 +3.1
2,532,621 - BPHYT_RS11140 0.71 +0.3
2,533,847 - -0.8
2,533,979 - +0.4
2,533,982 - -0.6

Or see this region's nucleotide sequence