Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25210 and AO356_25215 are separated by 2 nucleotides AO356_25215 and AO356_25220 overlap by 8 nucleotides AO356_25220 and AO356_25225 are separated by 10 nucleotides
AO356_25210: AO356_25210 - nitrate reductase, at 5,706,960 to 5,708,498
_25210
AO356_25215: AO356_25215 - nitrate reductase, at 5,708,501 to 5,709,256
_25215
AO356_25220: AO356_25220 - nitrate reductase, at 5,709,249 to 5,709,929
_25220
AO356_25225: AO356_25225 - peptidylprolyl isomerase, at 5,709,940 to 5,710,893
_25225
Position (kb) 5708
5709
5710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5707.560 kb on + strand, within AO356_25210 at 5707.560 kb on + strand, within AO356_25210 at 5707.561 kb on - strand, within AO356_25210 at 5707.642 kb on - strand, within AO356_25210 at 5707.653 kb on + strand, within AO356_25210 at 5707.654 kb on - strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.780 kb on - strand, within AO356_25210 at 5707.780 kb on - strand, within AO356_25210 at 5707.833 kb on + strand, within AO356_25210 at 5707.834 kb on - strand, within AO356_25210 at 5707.948 kb on - strand, within AO356_25210 at 5707.995 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.200 kb on - strand, within AO356_25210 at 5708.200 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.292 kb on + strand, within AO356_25210 at 5708.292 kb on + strand, within AO356_25210 at 5708.310 kb on + strand, within AO356_25210 at 5708.311 kb on - strand, within AO356_25210 at 5708.311 kb on - strand, within AO356_25210 at 5708.838 kb on - strand, within AO356_25215 at 5708.838 kb on - strand, within AO356_25215 at 5708.838 kb on - strand, within AO356_25215 at 5708.849 kb on + strand, within AO356_25215 at 5708.850 kb on - strand, within AO356_25215 at 5708.850 kb on - strand, within AO356_25215 at 5708.912 kb on + strand, within AO356_25215 at 5708.913 kb on - strand, within AO356_25215 at 5708.913 kb on - strand, within AO356_25215 at 5708.960 kb on + strand, within AO356_25215 at 5709.282 kb on + strand at 5709.282 kb on + strand at 5709.288 kb on + strand at 5709.288 kb on + strand at 5709.289 kb on - strand at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 5,707,560 + AO356_25210 0.39 -0.3 5,707,560 + AO356_25210 0.39 +0.4 5,707,561 - AO356_25210 0.39 -0.3 5,707,642 - AO356_25210 0.44 -0.1 5,707,653 + AO356_25210 0.45 +0.2 5,707,654 - AO356_25210 0.45 +0.7 5,707,779 + AO356_25210 0.53 +0.3 5,707,779 + AO356_25210 0.53 -0.7 5,707,779 + AO356_25210 0.53 +0.3 5,707,780 - AO356_25210 0.53 -0.0 5,707,780 - AO356_25210 0.53 -0.2 5,707,833 + AO356_25210 0.57 +0.1 5,707,834 - AO356_25210 0.57 -0.4 5,707,948 - AO356_25210 0.64 +1.3 5,707,995 + AO356_25210 0.67 +0.5 5,708,199 + AO356_25210 0.81 +0.1 5,708,199 + AO356_25210 0.81 +0.7 5,708,199 + AO356_25210 0.81 -0.3 5,708,200 - AO356_25210 0.81 +0.7 5,708,200 - AO356_25210 0.81 +0.4 5,708,287 - AO356_25210 0.86 +0.1 5,708,287 - AO356_25210 0.86 -0.1 5,708,287 - AO356_25210 0.86 +0.3 5,708,292 + AO356_25210 0.87 -0.3 5,708,292 + AO356_25210 0.87 +0.0 5,708,310 + AO356_25210 0.88 +0.4 5,708,311 - AO356_25210 0.88 -0.6 5,708,311 - AO356_25210 0.88 +0.1 5,708,838 - AO356_25215 0.45 +0.8 5,708,838 - AO356_25215 0.45 +0.2 5,708,838 - AO356_25215 0.45 +0.2 5,708,849 + AO356_25215 0.46 -0.9 5,708,850 - AO356_25215 0.46 -2.9 5,708,850 - AO356_25215 0.46 -0.2 5,708,912 + AO356_25215 0.54 -1.3 5,708,913 - AO356_25215 0.54 +0.3 5,708,913 - AO356_25215 0.54 +0.4 5,708,960 + AO356_25215 0.61 -0.8 5,709,282 + +1.2 5,709,282 + +0.3 5,709,288 + +1.0 5,709,288 + +1.0 5,709,289 - -1.3 5,709,345 + AO356_25220 0.14 -0.4 5,709,345 + AO356_25220 0.14 +0.9 5,709,345 + AO356_25220 0.14 +0.3 5,709,478 - AO356_25220 0.34 +0.7 5,709,478 - AO356_25220 0.34 -0.9
Or see this region's nucleotide sequence