Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25880

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS25870 and RR42_RS25875 are separated by 128 nucleotidesRR42_RS25875 and RR42_RS25880 are separated by 105 nucleotidesRR42_RS25880 and RR42_RS25885 are separated by 477 nucleotides RR42_RS25870: RR42_RS25870 - fatty acid hydroxylase, at 1,145,205 to 1,146,329 _RS25870 RR42_RS25875: RR42_RS25875 - hypothetical protein, at 1,146,458 to 1,146,649 _RS25875 RR42_RS25880: RR42_RS25880 - hypothetical protein, at 1,146,755 to 1,147,579 _RS25880 RR42_RS25885: RR42_RS25885 - diguanylate cyclase, at 1,148,057 to 1,149,199 _RS25885 Position (kb) 1146 1147 1148Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1145.799 kb on + strand, within RR42_RS25870at 1145.799 kb on + strand, within RR42_RS25870at 1145.814 kb on + strand, within RR42_RS25870at 1145.814 kb on + strand, within RR42_RS25870at 1145.814 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.883 kb on + strand, within RR42_RS25870at 1145.888 kb on + strand, within RR42_RS25870at 1145.940 kb on + strand, within RR42_RS25870at 1145.941 kb on - strand, within RR42_RS25870at 1146.044 kb on + strand, within RR42_RS25870at 1146.044 kb on + strand, within RR42_RS25870at 1146.159 kb on + strand, within RR42_RS25870at 1146.430 kb on + strandat 1146.430 kb on + strandat 1146.431 kb on - strandat 1146.432 kb on + strandat 1146.432 kb on + strandat 1146.432 kb on + strandat 1146.432 kb on + strandat 1146.432 kb on + strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.433 kb on - strandat 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.526 kb on + strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.527 kb on - strand, within RR42_RS25875at 1146.640 kb on - strandat 1146.708 kb on - strandat 1146.708 kb on - strandat 1146.746 kb on - strandat 1146.998 kb on + strand, within RR42_RS25880at 1147.266 kb on - strand, within RR42_RS25880at 1147.292 kb on + strand, within RR42_RS25880at 1147.293 kb on - strand, within RR42_RS25880at 1147.313 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.393 kb on + strand, within RR42_RS25880at 1147.394 kb on - strand, within RR42_RS25880at 1147.394 kb on - strand, within RR42_RS25880at 1147.428 kb on + strand, within RR42_RS25880at 1147.429 kb on - strand, within RR42_RS25880at 1147.429 kb on - strand, within RR42_RS25880at 1147.508 kb on + strandat 1147.509 kb on - strandat 1147.509 kb on - strandat 1147.545 kb on + strandat 1147.545 kb on + strandat 1147.546 kb on - strandat 1147.546 kb on - strandat 1147.567 kb on + strandat 1147.568 kb on - strandat 1147.597 kb on + strandat 1147.606 kb on - strandat 1147.610 kb on + strandat 1147.610 kb on + strandat 1147.610 kb on + strandat 1147.611 kb on - strandat 1147.620 kb on + strandat 1147.638 kb on + strandat 1147.638 kb on + strandat 1147.639 kb on - strandat 1147.655 kb on + strandat 1147.655 kb on + strandat 1147.656 kb on - strandat 1147.656 kb on - strandat 1147.706 kb on + strandat 1147.706 kb on + strandat 1147.707 kb on - strandat 1147.733 kb on + strandat 1147.734 kb on - strandat 1147.843 kb on - strandat 1147.843 kb on - strandat 1147.888 kb on + strandat 1147.889 kb on - strandat 1147.967 kb on + strandat 1147.967 kb on + strandat 1147.967 kb on + strandat 1148.032 kb on + strandat 1148.033 kb on - strandat 1148.039 kb on + strandat 1148.039 kb on + strandat 1148.040 kb on - strandat 1148.040 kb on - strandat 1148.040 kb on - strandat 1148.158 kb on + strandat 1148.159 kb on - strandat 1148.173 kb on - strand, within RR42_RS25885at 1148.219 kb on + strand, within RR42_RS25885at 1148.219 kb on + strand, within RR42_RS25885at 1148.220 kb on - strand, within RR42_RS25885at 1148.300 kb on + strand, within RR42_RS25885at 1148.301 kb on - strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.445 kb on + strand, within RR42_RS25885at 1148.446 kb on - strand, within RR42_RS25885at 1148.446 kb on - strand, within RR42_RS25885at 1148.454 kb on + strand, within RR42_RS25885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
1,145,799 + RR42_RS25870 0.53 +0.8
1,145,799 + RR42_RS25870 0.53 -0.4
1,145,814 + RR42_RS25870 0.54 -0.3
1,145,814 + RR42_RS25870 0.54 +0.4
1,145,814 + RR42_RS25870 0.54 -0.4
1,145,883 + RR42_RS25870 0.60 -0.4
1,145,883 + RR42_RS25870 0.60 +1.3
1,145,883 + RR42_RS25870 0.60 +0.5
1,145,883 + RR42_RS25870 0.60 +0.6
1,145,883 + RR42_RS25870 0.60 +0.1
1,145,883 + RR42_RS25870 0.60 +0.9
1,145,888 + RR42_RS25870 0.61 +0.4
1,145,940 + RR42_RS25870 0.65 -0.4
1,145,941 - RR42_RS25870 0.65 +0.3
1,146,044 + RR42_RS25870 0.75 -0.1
1,146,044 + RR42_RS25870 0.75 -0.4
1,146,159 + RR42_RS25870 0.85 +0.4
1,146,430 + +0.3
1,146,430 + +0.9
1,146,431 - -0.2
1,146,432 + -1.1
1,146,432 + +0.6
1,146,432 + +0.4
1,146,432 + -0.1
1,146,432 + +0.7
1,146,433 - +0.4
1,146,433 - -1.2
1,146,433 - -0.3
1,146,433 - -1.1
1,146,433 - -1.8
1,146,433 - -0.9
1,146,433 - +0.2
1,146,433 - +0.1
1,146,526 + RR42_RS25875 0.35 -0.1
1,146,526 + RR42_RS25875 0.35 +1.4
1,146,526 + RR42_RS25875 0.35 -1.3
1,146,526 + RR42_RS25875 0.35 -0.7
1,146,526 + RR42_RS25875 0.35 -0.8
1,146,526 + RR42_RS25875 0.35 -0.1
1,146,526 + RR42_RS25875 0.35 -0.0
1,146,526 + RR42_RS25875 0.35 -0.4
1,146,527 - RR42_RS25875 0.36 -1.9
1,146,527 - RR42_RS25875 0.36 -0.2
1,146,527 - RR42_RS25875 0.36 -1.2
1,146,527 - RR42_RS25875 0.36 +0.6
1,146,527 - RR42_RS25875 0.36 +0.1
1,146,527 - RR42_RS25875 0.36 -0.2
1,146,527 - RR42_RS25875 0.36 -1.1
1,146,527 - RR42_RS25875 0.36 -0.1
1,146,527 - RR42_RS25875 0.36 +0.3
1,146,527 - RR42_RS25875 0.36 -0.4
1,146,640 - +0.4
1,146,708 - +0.4
1,146,708 - -0.8
1,146,746 - -1.3
1,146,998 + RR42_RS25880 0.29 +1.1
1,147,266 - RR42_RS25880 0.62 -0.3
1,147,292 + RR42_RS25880 0.65 +0.3
1,147,293 - RR42_RS25880 0.65 +0.2
1,147,313 + RR42_RS25880 0.68 -0.3
1,147,393 + RR42_RS25880 0.77 -0.1
1,147,393 + RR42_RS25880 0.77 -1.2
1,147,393 + RR42_RS25880 0.77 -1.7
1,147,394 - RR42_RS25880 0.77 -1.2
1,147,394 - RR42_RS25880 0.77 -0.2
1,147,428 + RR42_RS25880 0.82 +0.1
1,147,429 - RR42_RS25880 0.82 +0.4
1,147,429 - RR42_RS25880 0.82 +0.3
1,147,508 + +1.8
1,147,509 - -0.2
1,147,509 - +0.6
1,147,545 + -0.4
1,147,545 + -0.7
1,147,546 - -0.3
1,147,546 - -1.6
1,147,567 + -0.3
1,147,568 - +0.1
1,147,597 + +0.5
1,147,606 - -0.3
1,147,610 + -0.8
1,147,610 + -0.3
1,147,610 + +0.4
1,147,611 - +0.1
1,147,620 + -1.0
1,147,638 + +0.3
1,147,638 + -0.1
1,147,639 - +0.5
1,147,655 + +0.0
1,147,655 + -0.1
1,147,656 - +0.3
1,147,656 - -0.7
1,147,706 + -0.2
1,147,706 + +0.3
1,147,707 - +1.0
1,147,733 + -0.1
1,147,734 - -0.4
1,147,843 - +0.5
1,147,843 - -0.7
1,147,888 + -0.0
1,147,889 - -0.7
1,147,967 + +0.1
1,147,967 + +0.5
1,147,967 + -0.8
1,148,032 + -1.1
1,148,033 - -0.9
1,148,039 + -0.3
1,148,039 + -0.3
1,148,040 - -0.9
1,148,040 - -0.4
1,148,040 - +0.6
1,148,158 + +3.1
1,148,159 - -0.1
1,148,173 - RR42_RS25885 0.10 -0.7
1,148,219 + RR42_RS25885 0.14 -0.4
1,148,219 + RR42_RS25885 0.14 -0.4
1,148,220 - RR42_RS25885 0.14 +0.2
1,148,300 + RR42_RS25885 0.21 +0.3
1,148,301 - RR42_RS25885 0.21 -0.3
1,148,445 + RR42_RS25885 0.34 +0.0
1,148,445 + RR42_RS25885 0.34 +0.7
1,148,445 + RR42_RS25885 0.34 -0.4
1,148,446 - RR42_RS25885 0.34 +0.4
1,148,446 - RR42_RS25885 0.34 +0.5
1,148,454 + RR42_RS25885 0.35 -0.1

Or see this region's nucleotide sequence