Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22260 and RR42_RS22265 are separated by 51 nucleotides RR42_RS22265 and RR42_RS22270 are separated by 1 nucleotides
RR42_RS22260: RR42_RS22260 - hypothetical protein, at 332,121 to 333,455
_RS22260
RR42_RS22265: RR42_RS22265 - hypothetical protein, at 333,507 to 337,334
_RS22265
RR42_RS22270: RR42_RS22270 - hypothetical protein, at 337,336 to 339,390
_RS22270
Position (kb) 333
334
335
336
337
338 Strain fitness (log2 ratio) -1
0
1
2 at 332.932 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.016 kb on - strand, within RR42_RS22260 at 333.047 kb on - strand, within RR42_RS22260 at 333.418 kb on + strand at 333.489 kb on + strand at 333.489 kb on + strand at 333.489 kb on + strand at 333.490 kb on - strand at 333.528 kb on - strand at 333.540 kb on - strand at 333.965 kb on - strand, within RR42_RS22265 at 333.965 kb on - strand, within RR42_RS22265 at 333.979 kb on + strand, within RR42_RS22265 at 333.979 kb on + strand, within RR42_RS22265 at 334.177 kb on + strand, within RR42_RS22265 at 334.309 kb on - strand, within RR42_RS22265 at 334.539 kb on - strand, within RR42_RS22265 at 334.747 kb on + strand, within RR42_RS22265 at 334.954 kb on - strand, within RR42_RS22265 at 335.675 kb on - strand, within RR42_RS22265 at 335.675 kb on - strand, within RR42_RS22265 at 335.684 kb on + strand, within RR42_RS22265 at 335.684 kb on + strand, within RR42_RS22265 at 335.685 kb on - strand, within RR42_RS22265 at 335.929 kb on + strand, within RR42_RS22265 at 335.929 kb on + strand, within RR42_RS22265 at 336.247 kb on + strand, within RR42_RS22265 at 336.418 kb on + strand, within RR42_RS22265 at 336.559 kb on + strand, within RR42_RS22265 at 336.785 kb on - strand, within RR42_RS22265 at 336.785 kb on - strand, within RR42_RS22265 at 336.785 kb on - strand, within RR42_RS22265 at 336.785 kb on - strand, within RR42_RS22265 at 337.054 kb on + strand at 337.054 kb on + strand at 337.072 kb on + strand at 337.177 kb on + strand at 337.282 kb on + strand at 337.391 kb on + strand at 337.391 kb on + strand at 337.392 kb on - strand at 337.392 kb on - strand at 337.421 kb on + strand at 337.421 kb on + strand at 337.497 kb on - strand at 337.892 kb on + strand, within RR42_RS22270 at 338.177 kb on + strand, within RR42_RS22270 at 338.177 kb on + strand, within RR42_RS22270 at 338.178 kb on - strand, within RR42_RS22270
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 332,932 + RR42_RS22260 0.61 -0.0 333,015 + RR42_RS22260 0.67 +0.2 333,015 + RR42_RS22260 0.67 -1.0 333,016 - RR42_RS22260 0.67 +0.6 333,047 - RR42_RS22260 0.69 -1.5 333,418 + -0.4 333,489 + -0.4 333,489 + -0.3 333,489 + +0.3 333,490 - -0.1 333,528 - +2.2 333,540 - +0.7 333,965 - RR42_RS22265 0.12 -0.7 333,965 - RR42_RS22265 0.12 +0.2 333,979 + RR42_RS22265 0.12 -0.4 333,979 + RR42_RS22265 0.12 +0.4 334,177 + RR42_RS22265 0.18 -0.8 334,309 - RR42_RS22265 0.21 -0.3 334,539 - RR42_RS22265 0.27 +0.1 334,747 + RR42_RS22265 0.32 -1.2 334,954 - RR42_RS22265 0.38 +0.5 335,675 - RR42_RS22265 0.57 +0.2 335,675 - RR42_RS22265 0.57 -0.6 335,684 + RR42_RS22265 0.57 +0.3 335,684 + RR42_RS22265 0.57 -0.3 335,685 - RR42_RS22265 0.57 +1.4 335,929 + RR42_RS22265 0.63 +0.8 335,929 + RR42_RS22265 0.63 +0.3 336,247 + RR42_RS22265 0.72 +0.6 336,418 + RR42_RS22265 0.76 -0.4 336,559 + RR42_RS22265 0.80 -0.1 336,785 - RR42_RS22265 0.86 -1.6 336,785 - RR42_RS22265 0.86 -0.9 336,785 - RR42_RS22265 0.86 -0.0 336,785 - RR42_RS22265 0.86 -0.6 337,054 + -0.9 337,054 + +0.3 337,072 + -0.9 337,177 + +0.2 337,282 + -0.4 337,391 + +0.3 337,391 + +0.4 337,392 - +0.5 337,392 - +0.4 337,421 + -0.3 337,421 + +1.2 337,497 - -0.2 337,892 + RR42_RS22270 0.27 +1.0 338,177 + RR42_RS22270 0.41 +0.5 338,177 + RR42_RS22270 0.41 +0.2 338,178 - RR42_RS22270 0.41 -0.3
Or see this region's nucleotide sequence