Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08215

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08205 and RR42_RS08210 are separated by 347 nucleotidesRR42_RS08210 and RR42_RS08215 are separated by 101 nucleotidesRR42_RS08215 and RR42_RS08220 are separated by 418 nucleotides RR42_RS08205: RR42_RS08205 - hypothetical protein, at 1,742,740 to 1,743,105 _RS08205 RR42_RS08210: RR42_RS08210 - hypothetical protein, at 1,743,453 to 1,743,794 _RS08210 RR42_RS08215: RR42_RS08215 - DNA-binding protein, at 1,743,896 to 1,744,501 _RS08215 RR42_RS08220: RR42_RS08220 - hypothetical protein, at 1,744,920 to 1,745,153 _RS08220 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -1 0 1 2at 1743.187 kb on - strandat 1743.412 kb on - strandat 1743.754 kb on - strand, within RR42_RS08210at 1743.812 kb on - strandat 1743.917 kb on + strandat 1744.708 kb on - strandat 1744.895 kb on + strandat 1744.965 kb on - strand, within RR42_RS08220at 1745.011 kb on + strand, within RR42_RS08220at 1745.043 kb on - strand, within RR42_RS08220at 1745.156 kb on + strandat 1745.157 kb on - strandat 1745.185 kb on + strandat 1745.302 kb on + strandat 1745.371 kb on - strandat 1745.399 kb on + strandat 1745.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,743,187 - +0.0
1,743,412 - +0.2
1,743,754 - RR42_RS08210 0.88 +0.5
1,743,812 - -0.1
1,743,917 + -0.4
1,744,708 - +0.8
1,744,895 + -0.4
1,744,965 - RR42_RS08220 0.19 +0.6
1,745,011 + RR42_RS08220 0.39 +1.8
1,745,043 - RR42_RS08220 0.53 +1.7
1,745,156 + +0.3
1,745,157 - +0.5
1,745,185 + -0.2
1,745,302 + +0.0
1,745,371 - -1.5
1,745,399 + +1.8
1,745,399 + -0.8

Or see this region's nucleotide sequence