Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08210

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08195 and RR42_RS08200 overlap by 4 nucleotidesRR42_RS08200 and RR42_RS08205 overlap by 4 nucleotidesRR42_RS08205 and RR42_RS08210 are separated by 347 nucleotidesRR42_RS08210 and RR42_RS08215 are separated by 101 nucleotides RR42_RS08195: RR42_RS08195 - hypothetical protein, at 1,742,013 to 1,742,531 _RS08195 RR42_RS08200: RR42_RS08200 - hypothetical protein, at 1,742,528 to 1,742,743 _RS08200 RR42_RS08205: RR42_RS08205 - hypothetical protein, at 1,742,740 to 1,743,105 _RS08205 RR42_RS08210: RR42_RS08210 - hypothetical protein, at 1,743,453 to 1,743,794 _RS08210 RR42_RS08215: RR42_RS08215 - DNA-binding protein, at 1,743,896 to 1,744,501 _RS08215 Position (kb) 1743 1744Strain fitness (log2 ratio) -1 0 1at 1743.187 kb on - strandat 1743.412 kb on - strandat 1743.754 kb on - strand, within RR42_RS08210at 1743.812 kb on - strandat 1743.917 kb on + strandat 1744.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,743,187 - +0.0
1,743,412 - +0.2
1,743,754 - RR42_RS08210 0.88 +0.5
1,743,812 - -0.1
1,743,917 + -0.4
1,744,708 - +0.8

Or see this region's nucleotide sequence