Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02805

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02795 and RR42_RS02800 are separated by 1 nucleotidesRR42_RS02800 and RR42_RS02805 are separated by 116 nucleotidesRR42_RS02805 and RR42_RS02810 overlap by 4 nucleotidesRR42_RS02810 and RR42_RS02815 are separated by 17 nucleotides RR42_RS02795: RR42_RS02795 - multidrug DMT transporter permease, at 623,262 to 624,170 _RS02795 RR42_RS02800: RR42_RS02800 - glyoxalase I, at 624,172 to 624,579 _RS02800 RR42_RS02805: RR42_RS02805 - metal-dependent hydrolase, at 624,696 to 625,580 _RS02805 RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329 _RS02810 RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925 _RS02815 Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1at 623.828 kb on + strand, within RR42_RS02795at 624.224 kb on + strand, within RR42_RS02800at 624.366 kb on - strand, within RR42_RS02800at 624.383 kb on + strand, within RR42_RS02800at 624.398 kb on + strand, within RR42_RS02800at 624.398 kb on + strand, within RR42_RS02800at 624.399 kb on - strand, within RR42_RS02800at 624.402 kb on + strand, within RR42_RS02800at 624.402 kb on + strand, within RR42_RS02800at 624.403 kb on - strand, within RR42_RS02800at 624.404 kb on + strand, within RR42_RS02800at 624.404 kb on + strand, within RR42_RS02800at 624.405 kb on - strand, within RR42_RS02800at 624.405 kb on - strand, within RR42_RS02800at 624.405 kb on - strand, within RR42_RS02800at 624.464 kb on + strand, within RR42_RS02800at 624.464 kb on + strand, within RR42_RS02800at 624.464 kb on + strand, within RR42_RS02800at 624.465 kb on - strand, within RR42_RS02800at 624.465 kb on - strand, within RR42_RS02800at 624.465 kb on - strand, within RR42_RS02800at 624.521 kb on + strand, within RR42_RS02800at 624.522 kb on - strand, within RR42_RS02800at 624.522 kb on - strand, within RR42_RS02800at 624.597 kb on - strandat 624.619 kb on - strandat 624.641 kb on + strandat 624.641 kb on + strandat 624.642 kb on - strandat 624.698 kb on - strandat 624.951 kb on - strand, within RR42_RS02805at 624.976 kb on + strand, within RR42_RS02805at 624.976 kb on + strand, within RR42_RS02805at 624.977 kb on - strand, within RR42_RS02805at 624.980 kb on + strand, within RR42_RS02805at 624.981 kb on - strand, within RR42_RS02805at 624.981 kb on - strand, within RR42_RS02805at 625.375 kb on + strand, within RR42_RS02805at 625.781 kb on + strand, within RR42_RS02810at 625.782 kb on - strand, within RR42_RS02810at 625.828 kb on - strand, within RR42_RS02810at 626.061 kb on + strand, within RR42_RS02810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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623,828 + RR42_RS02795 0.62 +0.9
624,224 + RR42_RS02800 0.13 +0.0
624,366 - RR42_RS02800 0.48 +0.4
624,383 + RR42_RS02800 0.52 +1.4
624,398 + RR42_RS02800 0.55 -1.1
624,398 + RR42_RS02800 0.55 -0.4
624,399 - RR42_RS02800 0.56 +1.1
624,402 + RR42_RS02800 0.56 -1.2
624,402 + RR42_RS02800 0.56 +0.1
624,403 - RR42_RS02800 0.57 +0.2
624,404 + RR42_RS02800 0.57 -1.3
624,404 + RR42_RS02800 0.57 +0.6
624,405 - RR42_RS02800 0.57 -0.1
624,405 - RR42_RS02800 0.57 -3.6
624,405 - RR42_RS02800 0.57 +0.1
624,464 + RR42_RS02800 0.72 +0.6
624,464 + RR42_RS02800 0.72 +0.7
624,464 + RR42_RS02800 0.72 -0.5
624,465 - RR42_RS02800 0.72 -0.0
624,465 - RR42_RS02800 0.72 +1.1
624,465 - RR42_RS02800 0.72 +0.8
624,521 + RR42_RS02800 0.86 +0.4
624,522 - RR42_RS02800 0.86 -0.7
624,522 - RR42_RS02800 0.86 -1.5
624,597 - -0.2
624,619 - +0.7
624,641 + +0.2
624,641 + +0.2
624,642 - -1.4
624,698 - +0.3
624,951 - RR42_RS02805 0.29 +0.2
624,976 + RR42_RS02805 0.32 +0.1
624,976 + RR42_RS02805 0.32 +0.2
624,977 - RR42_RS02805 0.32 +1.0
624,980 + RR42_RS02805 0.32 +1.1
624,981 - RR42_RS02805 0.32 +0.4
624,981 - RR42_RS02805 0.32 +0.7
625,375 + RR42_RS02805 0.77 +0.0
625,781 + RR42_RS02810 0.27 -1.7
625,782 - RR42_RS02810 0.27 -0.8
625,828 - RR42_RS02810 0.33 +0.6
626,061 + RR42_RS02810 0.64 +0.5

Or see this region's nucleotide sequence