Strain Fitness in Pantoea sp. MT58 around IAI47_04880

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04875 and IAI47_04880 are separated by 131 nucleotidesIAI47_04880 and IAI47_04885 are separated by 145 nucleotides IAI47_04875: IAI47_04875 - signal peptidase I, at 1,022,917 to 1,023,891 _04875 IAI47_04880: IAI47_04880 - ribonuclease III, at 1,024,023 to 1,024,703 _04880 IAI47_04885: IAI47_04885 - GTPase Era, at 1,024,849 to 1,025,754 _04885 Position (kb) 1024 1025Strain fitness (log2 ratio) -1 0 1 2 3 4at 1023.852 kb on + strandat 1023.906 kb on + strandat 1023.906 kb on + strandat 1023.906 kb on + strandat 1023.985 kb on + strandat 1023.985 kb on + strandat 1024.690 kb on + strandat 1024.690 kb on + strandat 1024.701 kb on + strandat 1024.701 kb on + strandat 1024.801 kb on + strandat 1024.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,023,852 + -1.4
1,023,906 + +1.8
1,023,906 + -1.4
1,023,906 + +4.2
1,023,985 + -0.7
1,023,985 + +0.4
1,024,690 + +1.4
1,024,690 + +0.4
1,024,701 + -1.0
1,024,701 + -0.6
1,024,801 + +0.2
1,024,801 + +1.0

Or see this region's nucleotide sequence