Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2446 and Ga0059261_2447 are separated by 79 nucleotides Ga0059261_2447 and Ga0059261_2448 overlap by 8 nucleotides Ga0059261_2448 and Ga0059261_2449 are separated by 10 nucleotides Ga0059261_2449 and Ga0059261_2450 are separated by 136 nucleotides
Ga0059261_2446: Ga0059261_2446 - glutamate racemase (EC 5.1.1.3), at 2,530,430 to 2,531,227
_2446
Ga0059261_2447: Ga0059261_2447 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 2,531,307 to 2,531,912
_2447
Ga0059261_2448: Ga0059261_2448 - DNA protecting protein DprA, at 2,531,905 to 2,532,990
_2448
Ga0059261_2449: Ga0059261_2449 - Hemerythrin HHE cation binding domain, at 2,533,001 to 2,533,429
_2449
Ga0059261_2450: Ga0059261_2450 - DNA topoisomerase I, bacterial, at 2,533,566 to 2,536,115
_2450
Position (kb)
2531
2532
2533 Strain fitness (log2 ratio)
-2
-1
0
1 at 2531.228 kb on - strand at 2531.228 kb on - strand at 2531.279 kb on - strand at 2531.279 kb on - strand at 2531.974 kb on + strand at 2531.975 kb on - strand at 2532.151 kb on + strand, within Ga0059261_2448 at 2532.733 kb on - strand, within Ga0059261_2448 at 2532.733 kb on - strand, within Ga0059261_2448 at 2532.926 kb on + strand at 2532.926 kb on + strand at 2532.927 kb on - strand at 2532.927 kb on - strand at 2533.047 kb on + strand, within Ga0059261_2449 at 2533.047 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.194 kb on + strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.195 kb on - strand, within Ga0059261_2449 at 2533.260 kb on + strand, within Ga0059261_2449 at 2533.260 kb on + strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.261 kb on - strand, within Ga0059261_2449 at 2533.479 kb on + strand at 2533.480 kb on - strand at 2533.480 kb on - strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.538 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand at 2533.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 2,531,228 - +0.5 2,531,228 - +0.1 2,531,279 - -1.9 2,531,279 - -1.4 2,531,974 + +0.3 2,531,975 - +0.0 2,532,151 + Ga0059261_2448 0.23 -1.4 2,532,733 - Ga0059261_2448 0.76 +1.0 2,532,733 - Ga0059261_2448 0.76 -0.2 2,532,926 + -0.5 2,532,926 + +0.3 2,532,927 - +0.5 2,532,927 - -0.4 2,533,047 + Ga0059261_2449 0.11 +0.0 2,533,047 + Ga0059261_2449 0.11 -0.3 2,533,194 + Ga0059261_2449 0.45 +0.3 2,533,194 + Ga0059261_2449 0.45 +1.1 2,533,194 + Ga0059261_2449 0.45 +1.0 2,533,194 + Ga0059261_2449 0.45 +0.0 2,533,195 - Ga0059261_2449 0.45 -0.1 2,533,195 - Ga0059261_2449 0.45 -0.3 2,533,195 - Ga0059261_2449 0.45 +0.1 2,533,195 - Ga0059261_2449 0.45 +1.3 2,533,195 - Ga0059261_2449 0.45 -0.2 2,533,195 - Ga0059261_2449 0.45 +0.3 2,533,195 - Ga0059261_2449 0.45 +0.0 2,533,195 - Ga0059261_2449 0.45 +0.4 2,533,260 + Ga0059261_2449 0.60 -0.0 2,533,260 + Ga0059261_2449 0.60 -0.4 2,533,261 - Ga0059261_2449 0.61 -0.9 2,533,261 - Ga0059261_2449 0.61 +0.3 2,533,261 - Ga0059261_2449 0.61 -0.1 2,533,261 - Ga0059261_2449 0.61 -0.8 2,533,261 - Ga0059261_2449 0.61 +0.0 2,533,261 - Ga0059261_2449 0.61 +1.2 2,533,479 + -0.9 2,533,480 - -0.2 2,533,480 - +0.4 2,533,538 + -1.6 2,533,538 + +1.0 2,533,538 + +0.4 2,533,538 + -0.2 2,533,540 + +1.3 2,533,540 + -0.7 2,533,540 + -0.3 2,533,540 + -0.3
Or see this region's nucleotide sequence