Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02615 and EX31_RS25725 are separated by 319 nucleotides EX31_RS25725 and EX31_RS02625 are separated by 69 nucleotides
EX31_RS02615: EX31_RS02615 - lipase family protein, at 557,270 to 559,369
_RS02615
EX31_RS25725: EX31_RS25725 - hypothetical protein, at 559,689 to 560,123
_RS25725
EX31_RS02625: EX31_RS02625 - hypothetical protein, at 560,193 to 560,933
_RS02625
Position (kb) 559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 558.774 kb on - strand, within EX31_RS02615 at 558.822 kb on + strand, within EX31_RS02615 at 558.855 kb on + strand, within EX31_RS02615 at 558.856 kb on - strand, within EX31_RS02615 at 558.904 kb on + strand, within EX31_RS02615 at 558.904 kb on + strand, within EX31_RS02615 at 558.905 kb on - strand, within EX31_RS02615 at 558.907 kb on + strand, within EX31_RS02615 at 558.907 kb on + strand, within EX31_RS02615 at 558.908 kb on - strand, within EX31_RS02615 at 558.908 kb on - strand, within EX31_RS02615 at 559.039 kb on + strand, within EX31_RS02615 at 559.040 kb on - strand, within EX31_RS02615 at 559.040 kb on - strand, within EX31_RS02615 at 559.084 kb on + strand, within EX31_RS02615 at 559.084 kb on + strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.108 kb on + strand, within EX31_RS02615 at 559.108 kb on + strand, within EX31_RS02615 at 559.109 kb on - strand, within EX31_RS02615 at 559.114 kb on + strand, within EX31_RS02615 at 559.115 kb on - strand, within EX31_RS02615 at 559.217 kb on - strand at 559.217 kb on - strand at 559.231 kb on - strand at 559.281 kb on + strand at 559.323 kb on + strand at 559.493 kb on + strand at 559.493 kb on + strand at 559.493 kb on + strand at 559.499 kb on - strand at 559.499 kb on - strand at 559.548 kb on + strand at 559.549 kb on - strand at 559.551 kb on - strand at 559.559 kb on + strand at 559.560 kb on - strand at 559.587 kb on - strand at 559.587 kb on - strand at 559.595 kb on + strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.650 kb on - strand at 559.683 kb on - strand at 559.683 kb on - strand at 559.987 kb on + strand, within EX31_RS25725 at 560.006 kb on - strand, within EX31_RS25725 at 560.009 kb on - strand, within EX31_RS25725 at 560.077 kb on + strand, within EX31_RS25725 at 560.077 kb on + strand, within EX31_RS25725 at 560.345 kb on + strand, within EX31_RS02625 at 560.361 kb on - strand, within EX31_RS02625 at 560.394 kb on + strand, within EX31_RS02625 at 560.777 kb on + strand, within EX31_RS02625
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 558,774 - EX31_RS02615 0.72 +0.1 558,822 + EX31_RS02615 0.74 +0.8 558,855 + EX31_RS02615 0.75 +0.8 558,856 - EX31_RS02615 0.76 -0.8 558,904 + EX31_RS02615 0.78 +1.8 558,904 + EX31_RS02615 0.78 -1.8 558,905 - EX31_RS02615 0.78 +1.8 558,907 + EX31_RS02615 0.78 -1.2 558,907 + EX31_RS02615 0.78 -0.3 558,908 - EX31_RS02615 0.78 -0.8 558,908 - EX31_RS02615 0.78 -0.8 559,039 + EX31_RS02615 0.84 +1.2 559,040 - EX31_RS02615 0.84 +0.2 559,040 - EX31_RS02615 0.84 -0.4 559,084 + EX31_RS02615 0.86 -1.2 559,084 + EX31_RS02615 0.86 -0.5 559,085 - EX31_RS02615 0.86 -0.6 559,085 - EX31_RS02615 0.86 +0.1 559,085 - EX31_RS02615 0.86 -0.5 559,106 + EX31_RS02615 0.87 -0.5 559,106 + EX31_RS02615 0.87 -0.3 559,106 + EX31_RS02615 0.87 -0.8 559,106 + EX31_RS02615 0.87 -0.8 559,106 + EX31_RS02615 0.87 +0.0 559,106 + EX31_RS02615 0.87 +1.8 559,106 + EX31_RS02615 0.87 +2.2 559,106 + EX31_RS02615 0.87 +2.4 559,106 + EX31_RS02615 0.87 +0.1 559,106 + EX31_RS02615 0.87 +1.0 559,107 - EX31_RS02615 0.87 -0.5 559,107 - EX31_RS02615 0.87 -0.6 559,107 - EX31_RS02615 0.87 +1.2 559,107 - EX31_RS02615 0.87 +0.8 559,107 - EX31_RS02615 0.87 +1.6 559,107 - EX31_RS02615 0.87 +0.8 559,107 - EX31_RS02615 0.87 +1.0 559,107 - EX31_RS02615 0.87 +0.5 559,107 - EX31_RS02615 0.87 +0.2 559,107 - EX31_RS02615 0.87 -2.3 559,108 + EX31_RS02615 0.88 +0.2 559,108 + EX31_RS02615 0.88 -3.2 559,109 - EX31_RS02615 0.88 -0.3 559,114 + EX31_RS02615 0.88 +0.7 559,115 - EX31_RS02615 0.88 -0.2 559,217 - +0.2 559,217 - -1.5 559,231 - +0.2 559,281 + +0.8 559,323 + +1.6 559,493 + +0.2 559,493 + -0.3 559,493 + +2.0 559,499 - -0.2 559,499 - -1.5 559,548 + +1.2 559,549 - +0.6 559,551 - -0.2 559,559 + +0.3 559,560 - -0.4 559,587 - -1.2 559,587 - -0.2 559,595 + +0.8 559,596 - +1.2 559,596 - +0.8 559,596 - -0.8 559,596 - +1.1 559,650 - +0.0 559,683 - -1.5 559,683 - +0.6 559,987 + EX31_RS25725 0.69 +1.7 560,006 - EX31_RS25725 0.73 -1.4 560,009 - EX31_RS25725 0.74 +1.4 560,077 + EX31_RS25725 0.89 -2.5 560,077 + EX31_RS25725 0.89 -2.2 560,345 + EX31_RS02625 0.21 +0.7 560,361 - EX31_RS02625 0.23 +0.8 560,394 + EX31_RS02625 0.27 +0.2 560,777 + EX31_RS02625 0.79 -1.8
Or see this region's nucleotide sequence