Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16575 and EX31_RS25470 are separated by 39 nucleotides EX31_RS25470 and EX31_RS16580 are separated by 78 nucleotides EX31_RS16580 and EX31_RS16585 are separated by 64 nucleotides
EX31_RS16575: EX31_RS16575 - LysR family transcriptional regulator, at 29,864 to 30,760
_RS16575
EX31_RS25470: EX31_RS25470 - LysR family transcriptional regulator, at 30,800 to 30,970
_RS25470
EX31_RS16580: EX31_RS16580 - transposase, at 31,049 to 31,246
_RS16580
EX31_RS16585: EX31_RS16585 - IS3 family transposase, at 31,311 to 31,709
_RS16585
Position (kb) 30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 29.800 kb on + strand at 29.800 kb on + strand at 29.800 kb on + strand at 29.800 kb on + strand at 29.800 kb on + strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.803 kb on + strand at 29.803 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.821 kb on + strand at 29.821 kb on + strand at 29.845 kb on + strand at 29.845 kb on + strand at 29.845 kb on + strand at 29.846 kb on - strand at 29.846 kb on - strand at 29.869 kb on + strand at 29.869 kb on + strand at 29.870 kb on - strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.891 kb on + strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.892 kb on - strand at 29.966 kb on - strand, within EX31_RS16575 at 30.000 kb on + strand, within EX31_RS16575 at 30.000 kb on + strand, within EX31_RS16575 at 30.001 kb on - strand, within EX31_RS16575 at 30.001 kb on - strand, within EX31_RS16575 at 30.001 kb on - strand, within EX31_RS16575 at 30.006 kb on + strand, within EX31_RS16575 at 30.007 kb on - strand, within EX31_RS16575 at 30.007 kb on - strand, within EX31_RS16575 at 30.009 kb on + strand, within EX31_RS16575 at 30.009 kb on + strand, within EX31_RS16575 at 30.009 kb on + strand, within EX31_RS16575 at 30.009 kb on + strand, within EX31_RS16575 at 30.010 kb on - strand, within EX31_RS16575 at 30.010 kb on - strand, within EX31_RS16575 at 30.010 kb on - strand, within EX31_RS16575 at 30.010 kb on - strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.013 kb on + strand, within EX31_RS16575 at 30.031 kb on + strand, within EX31_RS16575 at 30.031 kb on + strand, within EX31_RS16575 at 30.032 kb on - strand, within EX31_RS16575 at 30.032 kb on - strand, within EX31_RS16575 at 30.032 kb on - strand, within EX31_RS16575 at 30.032 kb on - strand, within EX31_RS16575 at 30.059 kb on + strand, within EX31_RS16575 at 30.059 kb on + strand, within EX31_RS16575 at 30.077 kb on - strand, within EX31_RS16575 at 30.091 kb on - strand, within EX31_RS16575 at 30.145 kb on + strand, within EX31_RS16575 at 30.209 kb on - strand, within EX31_RS16575 at 30.243 kb on + strand, within EX31_RS16575 at 30.243 kb on + strand, within EX31_RS16575 at 30.243 kb on + strand, within EX31_RS16575 at 30.244 kb on - strand, within EX31_RS16575 at 30.244 kb on - strand, within EX31_RS16575 at 30.247 kb on + strand, within EX31_RS16575 at 30.247 kb on + strand, within EX31_RS16575 at 30.247 kb on + strand, within EX31_RS16575 at 30.253 kb on + strand, within EX31_RS16575 at 30.344 kb on + strand, within EX31_RS16575 at 30.374 kb on + strand, within EX31_RS16575 at 30.374 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.414 kb on + strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.415 kb on - strand, within EX31_RS16575 at 30.445 kb on + strand, within EX31_RS16575 at 30.445 kb on + strand, within EX31_RS16575 at 30.445 kb on + strand, within EX31_RS16575 at 30.445 kb on + strand, within EX31_RS16575 at 30.446 kb on - strand, within EX31_RS16575 at 30.446 kb on - strand, within EX31_RS16575 at 30.446 kb on - strand, within EX31_RS16575 at 30.489 kb on - strand, within EX31_RS16575 at 30.569 kb on - strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.624 kb on + strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.625 kb on - strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.630 kb on + strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.631 kb on - strand, within EX31_RS16575 at 30.649 kb on - strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.669 kb on + strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.670 kb on - strand, within EX31_RS16575 at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.674 kb on + strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.675 kb on - strand at 30.758 kb on + strand at 30.759 kb on - strand at 30.759 kb on - strand at 30.759 kb on - strand at 30.759 kb on - strand at 30.785 kb on + strand at 30.786 kb on - strand at 30.799 kb on + strand at 30.799 kb on + strand at 30.875 kb on - strand, within EX31_RS25470 at 30.919 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.925 kb on + strand, within EX31_RS25470 at 30.926 kb on - strand, within EX31_RS25470 at 30.926 kb on - strand, within EX31_RS25470
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 29,800 + -0.5 29,800 + -2.5 29,800 + -0.2 29,800 + -1.1 29,800 + +1.3 29,801 - +0.9 29,801 - -0.6 29,801 - -0.8 29,801 - +0.5 29,801 - +0.0 29,801 - +0.4 29,803 + +0.7 29,803 + -0.1 29,813 + +0.7 29,813 + +0.4 29,813 + -1.4 29,813 + -0.6 29,813 + +2.7 29,813 + +2.4 29,813 + +0.0 29,814 - -2.0 29,814 - +0.8 29,814 - +3.4 29,814 - -2.6 29,814 - -0.9 29,814 - +2.8 29,821 + +0.8 29,821 + +1.0 29,845 + +0.4 29,845 + +1.4 29,845 + +0.1 29,846 - +0.5 29,846 - -0.9 29,869 + -1.1 29,869 + -1.0 29,870 - +2.2 29,891 + -2.1 29,891 + +0.7 29,891 + +1.2 29,891 + +2.1 29,891 + +0.5 29,891 + -0.1 29,891 + +0.4 29,891 + +0.1 29,891 + +0.5 29,892 - +0.1 29,892 - +0.1 29,892 - +3.2 29,892 - +0.2 29,892 - +0.4 29,892 - +0.0 29,892 - +0.2 29,892 - +0.6 29,892 - -1.2 29,892 - -1.9 29,892 - -0.6 29,892 - +0.4 29,892 - +1.4 29,892 - +1.5 29,892 - +0.2 29,966 - EX31_RS16575 0.11 +0.8 30,000 + EX31_RS16575 0.15 +1.7 30,000 + EX31_RS16575 0.15 -0.2 30,001 - EX31_RS16575 0.15 -0.3 30,001 - EX31_RS16575 0.15 -0.1 30,001 - EX31_RS16575 0.15 -0.6 30,006 + EX31_RS16575 0.16 -0.6 30,007 - EX31_RS16575 0.16 -0.9 30,007 - EX31_RS16575 0.16 -0.2 30,009 + EX31_RS16575 0.16 -1.4 30,009 + EX31_RS16575 0.16 +0.4 30,009 + EX31_RS16575 0.16 -1.4 30,009 + EX31_RS16575 0.16 -0.5 30,010 - EX31_RS16575 0.16 -0.6 30,010 - EX31_RS16575 0.16 -0.2 30,010 - EX31_RS16575 0.16 +0.6 30,010 - EX31_RS16575 0.16 +1.9 30,013 + EX31_RS16575 0.17 -0.5 30,013 + EX31_RS16575 0.17 -1.2 30,013 + EX31_RS16575 0.17 +1.4 30,013 + EX31_RS16575 0.17 -1.4 30,013 + EX31_RS16575 0.17 +0.2 30,013 + EX31_RS16575 0.17 +0.1 30,031 + EX31_RS16575 0.19 +1.3 30,031 + EX31_RS16575 0.19 -3.1 30,032 - EX31_RS16575 0.19 +1.6 30,032 - EX31_RS16575 0.19 -0.6 30,032 - EX31_RS16575 0.19 +0.4 30,032 - EX31_RS16575 0.19 +1.4 30,059 + EX31_RS16575 0.22 -0.2 30,059 + EX31_RS16575 0.22 -0.4 30,077 - EX31_RS16575 0.24 -1.1 30,091 - EX31_RS16575 0.25 +1.2 30,145 + EX31_RS16575 0.31 +1.9 30,209 - EX31_RS16575 0.38 -0.1 30,243 + EX31_RS16575 0.42 -0.3 30,243 + EX31_RS16575 0.42 -0.3 30,243 + EX31_RS16575 0.42 -0.4 30,244 - EX31_RS16575 0.42 -1.4 30,244 - EX31_RS16575 0.42 +0.7 30,247 + EX31_RS16575 0.43 +0.4 30,247 + EX31_RS16575 0.43 +0.7 30,247 + EX31_RS16575 0.43 -0.2 30,253 + EX31_RS16575 0.43 -0.6 30,344 + EX31_RS16575 0.54 +1.5 30,374 + EX31_RS16575 0.57 +0.4 30,374 + EX31_RS16575 0.57 +0.4 30,414 + EX31_RS16575 0.61 +2.2 30,414 + EX31_RS16575 0.61 -0.5 30,414 + EX31_RS16575 0.61 +0.8 30,414 + EX31_RS16575 0.61 +0.4 30,414 + EX31_RS16575 0.61 +1.4 30,414 + EX31_RS16575 0.61 -0.3 30,414 + EX31_RS16575 0.61 +0.8 30,414 + EX31_RS16575 0.61 +0.4 30,414 + EX31_RS16575 0.61 -1.0 30,414 + EX31_RS16575 0.61 -0.6 30,414 + EX31_RS16575 0.61 +0.0 30,414 + EX31_RS16575 0.61 +0.4 30,414 + EX31_RS16575 0.61 +0.3 30,414 + EX31_RS16575 0.61 -0.6 30,414 + EX31_RS16575 0.61 -0.6 30,415 - EX31_RS16575 0.61 -0.5 30,415 - EX31_RS16575 0.61 -0.9 30,415 - EX31_RS16575 0.61 -0.0 30,415 - EX31_RS16575 0.61 -0.6 30,415 - EX31_RS16575 0.61 +0.8 30,415 - EX31_RS16575 0.61 +2.1 30,445 + EX31_RS16575 0.65 +0.6 30,445 + EX31_RS16575 0.65 +0.9 30,445 + EX31_RS16575 0.65 -1.0 30,445 + EX31_RS16575 0.65 +0.1 30,446 - EX31_RS16575 0.65 +2.0 30,446 - EX31_RS16575 0.65 -2.8 30,446 - EX31_RS16575 0.65 +0.2 30,489 - EX31_RS16575 0.70 +0.2 30,569 - EX31_RS16575 0.79 -0.6 30,624 + EX31_RS16575 0.85 -1.0 30,624 + EX31_RS16575 0.85 +0.9 30,624 + EX31_RS16575 0.85 +0.1 30,624 + EX31_RS16575 0.85 -1.6 30,624 + EX31_RS16575 0.85 -0.6 30,624 + EX31_RS16575 0.85 +0.8 30,624 + EX31_RS16575 0.85 -1.4 30,624 + EX31_RS16575 0.85 +0.7 30,624 + EX31_RS16575 0.85 +0.1 30,624 + EX31_RS16575 0.85 +1.0 30,624 + EX31_RS16575 0.85 +0.4 30,624 + EX31_RS16575 0.85 -1.0 30,624 + EX31_RS16575 0.85 -2.4 30,625 - EX31_RS16575 0.85 +0.8 30,625 - EX31_RS16575 0.85 +0.1 30,625 - EX31_RS16575 0.85 -0.8 30,625 - EX31_RS16575 0.85 -0.3 30,625 - EX31_RS16575 0.85 -0.1 30,625 - EX31_RS16575 0.85 +1.4 30,625 - EX31_RS16575 0.85 +0.2 30,630 + EX31_RS16575 0.85 +0.5 30,630 + EX31_RS16575 0.85 +0.4 30,630 + EX31_RS16575 0.85 -0.2 30,630 + EX31_RS16575 0.85 +0.6 30,630 + EX31_RS16575 0.85 -1.6 30,630 + EX31_RS16575 0.85 +0.8 30,630 + EX31_RS16575 0.85 +0.9 30,630 + EX31_RS16575 0.85 -0.9 30,630 + EX31_RS16575 0.85 +0.8 30,630 + EX31_RS16575 0.85 +0.7 30,630 + EX31_RS16575 0.85 +0.1 30,630 + EX31_RS16575 0.85 +0.1 30,630 + EX31_RS16575 0.85 -0.0 30,630 + EX31_RS16575 0.85 +0.6 30,630 + EX31_RS16575 0.85 -0.6 30,631 - EX31_RS16575 0.86 -0.4 30,631 - EX31_RS16575 0.86 +0.4 30,631 - EX31_RS16575 0.86 -0.6 30,631 - EX31_RS16575 0.86 +0.9 30,631 - EX31_RS16575 0.86 +0.6 30,631 - EX31_RS16575 0.86 +0.6 30,631 - EX31_RS16575 0.86 -0.4 30,631 - EX31_RS16575 0.86 -1.2 30,631 - EX31_RS16575 0.86 +0.6 30,631 - EX31_RS16575 0.86 +0.6 30,631 - EX31_RS16575 0.86 -0.9 30,631 - EX31_RS16575 0.86 -0.2 30,631 - EX31_RS16575 0.86 +0.1 30,649 - EX31_RS16575 0.88 +1.9 30,669 + EX31_RS16575 0.90 +0.4 30,669 + EX31_RS16575 0.90 -1.0 30,669 + EX31_RS16575 0.90 +1.9 30,669 + EX31_RS16575 0.90 -1.7 30,669 + EX31_RS16575 0.90 -1.6 30,669 + EX31_RS16575 0.90 -0.8 30,669 + EX31_RS16575 0.90 -0.4 30,669 + EX31_RS16575 0.90 -0.6 30,669 + EX31_RS16575 0.90 +0.4 30,669 + EX31_RS16575 0.90 +0.0 30,669 + EX31_RS16575 0.90 +0.3 30,669 + EX31_RS16575 0.90 -1.8 30,670 - EX31_RS16575 0.90 +2.7 30,670 - EX31_RS16575 0.90 +0.4 30,670 - EX31_RS16575 0.90 +0.7 30,670 - EX31_RS16575 0.90 -0.6 30,670 - EX31_RS16575 0.90 +0.1 30,670 - EX31_RS16575 0.90 +1.4 30,670 - EX31_RS16575 0.90 -0.7 30,670 - EX31_RS16575 0.90 -1.2 30,670 - EX31_RS16575 0.90 +0.4 30,670 - EX31_RS16575 0.90 -0.2 30,670 - EX31_RS16575 0.90 +1.3 30,670 - EX31_RS16575 0.90 +1.4 30,670 - EX31_RS16575 0.90 +1.4 30,670 - EX31_RS16575 0.90 +1.7 30,670 - EX31_RS16575 0.90 -1.6 30,670 - EX31_RS16575 0.90 -0.4 30,670 - EX31_RS16575 0.90 +1.7 30,670 - EX31_RS16575 0.90 +0.4 30,674 + +0.7 30,674 + +0.0 30,674 + +1.2 30,674 + +0.4 30,674 + +1.0 30,674 + -0.4 30,674 + +0.7 30,674 + -0.0 30,674 + -2.0 30,674 + +0.6 30,674 + -1.8 30,674 + -1.0 30,675 - -0.6 30,675 - -1.0 30,675 - +0.4 30,675 - +0.8 30,675 - -1.2 30,675 - +0.9 30,675 - -0.5 30,675 - +1.9 30,675 - -0.2 30,675 - +1.9 30,758 + -2.4 30,759 - +0.7 30,759 - -1.2 30,759 - -0.4 30,759 - -1.0 30,785 + +1.8 30,786 - +0.4 30,799 + +2.7 30,799 + +0.8 30,875 - EX31_RS25470 0.44 +0.2 30,919 + EX31_RS25470 0.70 -0.6 30,925 + EX31_RS25470 0.73 +0.1 30,925 + EX31_RS25470 0.73 +1.7 30,925 + EX31_RS25470 0.73 +1.5 30,925 + EX31_RS25470 0.73 -0.6 30,925 + EX31_RS25470 0.73 +0.9 30,925 + EX31_RS25470 0.73 +2.5 30,926 - EX31_RS25470 0.74 +0.9 30,926 - EX31_RS25470 0.74 +0.8
Or see this region's nucleotide sequence