Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15505 and EX31_RS15510 are separated by 105 nucleotides EX31_RS15510 and EX31_RS25415 are separated by 209 nucleotides
EX31_RS15505: EX31_RS15505 - MFS transporter, at 53,138 to 54,508
_RS15505
EX31_RS15510: EX31_RS15510 - cupin, at 54,614 to 55,017
_RS15510
EX31_RS25415: EX31_RS25415 - helix-turn-helix domain-containing protein, at 55,227 to 55,322
_RS25415
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.259 kb on + strand, within EX31_RS15505 at 54.259 kb on + strand, within EX31_RS15505 at 54.260 kb on - strand, within EX31_RS15505 at 54.262 kb on + strand, within EX31_RS15505 at 54.263 kb on - strand, within EX31_RS15505 at 54.263 kb on - strand, within EX31_RS15505 at 54.268 kb on + strand, within EX31_RS15505 at 54.268 kb on + strand, within EX31_RS15505 at 54.268 kb on + strand, within EX31_RS15505 at 54.268 kb on + strand, within EX31_RS15505 at 54.269 kb on - strand, within EX31_RS15505 at 54.269 kb on - strand, within EX31_RS15505 at 54.410 kb on - strand at 54.410 kb on - strand at 54.457 kb on - strand at 54.474 kb on + strand at 54.528 kb on - strand at 54.553 kb on + strand at 54.553 kb on + strand at 54.554 kb on - strand at 54.560 kb on + strand at 54.561 kb on - strand at 54.567 kb on + strand at 54.578 kb on + strand at 54.579 kb on - strand at 54.579 kb on - strand at 54.602 kb on - strand at 54.613 kb on + strand at 54.614 kb on - strand at 54.623 kb on + strand at 54.624 kb on - strand at 54.690 kb on + strand, within EX31_RS15510 at 54.691 kb on - strand, within EX31_RS15510 at 54.753 kb on - strand, within EX31_RS15510 at 54.784 kb on - strand, within EX31_RS15510 at 54.826 kb on + strand, within EX31_RS15510 at 54.826 kb on + strand, within EX31_RS15510 at 54.827 kb on - strand, within EX31_RS15510 at 54.831 kb on + strand, within EX31_RS15510 at 54.831 kb on + strand, within EX31_RS15510 at 54.870 kb on + strand, within EX31_RS15510 at 54.871 kb on - strand, within EX31_RS15510 at 54.879 kb on + strand, within EX31_RS15510 at 54.880 kb on - strand, within EX31_RS15510 at 54.886 kb on - strand, within EX31_RS15510 at 54.914 kb on + strand, within EX31_RS15510 at 54.915 kb on - strand, within EX31_RS15510 at 54.923 kb on + strand, within EX31_RS15510 at 54.923 kb on + strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.924 kb on - strand, within EX31_RS15510 at 54.970 kb on + strand, within EX31_RS15510 at 54.971 kb on - strand, within EX31_RS15510 at 54.971 kb on - strand, within EX31_RS15510 at 55.025 kb on + strand at 55.025 kb on + strand at 55.032 kb on + strand at 55.032 kb on + strand at 55.043 kb on + strand at 55.058 kb on + strand at 55.071 kb on + strand at 55.079 kb on + strand at 55.080 kb on - strand at 55.080 kb on - strand at 55.080 kb on - strand at 55.084 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.123 kb on + strand at 55.146 kb on + strand at 55.146 kb on + strand at 55.146 kb on + strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.148 kb on + strand at 55.236 kb on + strand at 55.265 kb on + strand, within EX31_RS25415 at 55.318 kb on - strand at 55.374 kb on - strand at 55.409 kb on - strand at 55.436 kb on + strand at 55.437 kb on - strand at 55.467 kb on - strand at 55.467 kb on - strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.470 kb on + strand at 55.471 kb on - strand at 55.471 kb on - strand at 55.471 kb on - strand at 55.471 kb on - strand at 55.471 kb on - strand at 55.496 kb on + strand at 55.557 kb on - strand at 55.568 kb on + strand at 55.568 kb on + strand at 55.581 kb on + strand at 55.582 kb on - strand at 55.582 kb on - strand at 55.582 kb on - strand at 55.607 kb on + strand at 55.607 kb on + strand at 55.607 kb on + strand at 55.620 kb on - strand at 55.637 kb on + strand at 55.637 kb on + strand at 55.637 kb on + strand at 55.637 kb on + strand at 55.637 kb on + strand at 55.638 kb on - strand at 55.638 kb on - strand at 55.640 kb on + strand at 55.640 kb on + strand at 55.640 kb on + strand at 55.640 kb on + strand at 55.640 kb on + strand at 55.640 kb on + strand at 55.641 kb on - strand at 55.641 kb on - strand at 55.641 kb on - strand at 55.641 kb on - strand at 55.641 kb on - strand at 55.641 kb on - strand at 55.684 kb on + strand at 55.685 kb on - strand at 55.685 kb on - strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.689 kb on + strand at 55.690 kb on - strand at 55.725 kb on + strand at 55.726 kb on - strand at 55.726 kb on - strand at 55.728 kb on + strand at 55.728 kb on + strand at 55.729 kb on - strand at 55.729 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.751 kb on - strand at 55.753 kb on - strand at 55.753 kb on - strand at 55.753 kb on - strand at 55.753 kb on - strand at 55.753 kb on - strand at 55.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 54,259 + EX31_RS15505 0.82 +1.4 54,259 + EX31_RS15505 0.82 -1.5 54,260 - EX31_RS15505 0.82 -0.5 54,262 + EX31_RS15505 0.82 +0.9 54,263 - EX31_RS15505 0.82 +1.3 54,263 - EX31_RS15505 0.82 -0.0 54,268 + EX31_RS15505 0.82 +0.2 54,268 + EX31_RS15505 0.82 -0.1 54,268 + EX31_RS15505 0.82 +0.9 54,268 + EX31_RS15505 0.82 -0.4 54,269 - EX31_RS15505 0.82 +1.7 54,269 - EX31_RS15505 0.82 +0.2 54,410 - -1.6 54,410 - +0.8 54,457 - +1.4 54,474 + +1.4 54,528 - -0.4 54,553 + +1.7 54,553 + +0.4 54,554 - +0.4 54,560 + +0.3 54,561 - +0.4 54,567 + +0.2 54,578 + -0.6 54,579 - +0.6 54,579 - -0.6 54,602 - -0.1 54,613 + -1.0 54,614 - -0.6 54,623 + +0.4 54,624 - +0.4 54,690 + EX31_RS15510 0.19 -1.1 54,691 - EX31_RS15510 0.19 -0.6 54,753 - EX31_RS15510 0.34 +0.4 54,784 - EX31_RS15510 0.42 -0.1 54,826 + EX31_RS15510 0.52 +0.6 54,826 + EX31_RS15510 0.52 +0.2 54,827 - EX31_RS15510 0.53 -2.1 54,831 + EX31_RS15510 0.54 +0.4 54,831 + EX31_RS15510 0.54 +1.9 54,870 + EX31_RS15510 0.63 -0.6 54,871 - EX31_RS15510 0.64 -0.6 54,879 + EX31_RS15510 0.66 -0.1 54,880 - EX31_RS15510 0.66 +1.1 54,886 - EX31_RS15510 0.67 -0.7 54,914 + EX31_RS15510 0.74 +1.9 54,915 - EX31_RS15510 0.75 -0.4 54,923 + EX31_RS15510 0.76 +1.8 54,923 + EX31_RS15510 0.76 -1.6 54,924 - EX31_RS15510 0.77 +0.4 54,924 - EX31_RS15510 0.77 -1.9 54,924 - EX31_RS15510 0.77 +1.1 54,924 - EX31_RS15510 0.77 +0.1 54,924 - EX31_RS15510 0.77 -2.4 54,924 - EX31_RS15510 0.77 +1.8 54,970 + EX31_RS15510 0.88 +1.9 54,971 - EX31_RS15510 0.88 +0.4 54,971 - EX31_RS15510 0.88 +3.0 55,025 + +0.3 55,025 + +2.0 55,032 + +0.4 55,032 + -1.9 55,043 + -0.4 55,058 + +0.8 55,071 + +0.4 55,079 + +0.8 55,080 - +1.0 55,080 - +0.0 55,080 - +0.4 55,084 - +1.4 55,103 - +0.6 55,103 - +1.4 55,103 - +1.9 55,123 + +1.1 55,146 + -1.1 55,146 + -1.1 55,146 + +1.4 55,147 - +0.4 55,147 - -0.9 55,147 - +0.3 55,147 - +2.0 55,147 - -0.3 55,147 - -0.8 55,148 + +0.4 55,236 + +2.8 55,265 + EX31_RS25415 0.40 -1.0 55,318 - +0.2 55,374 - +1.4 55,409 - +0.1 55,436 + -0.6 55,437 - -1.1 55,467 - +0.2 55,467 - -1.9 55,470 + +0.1 55,470 + -0.3 55,470 + -0.6 55,470 + -0.1 55,470 + -0.3 55,470 + -1.6 55,470 + +1.4 55,470 + +1.7 55,470 + -2.6 55,471 - +1.6 55,471 - +0.3 55,471 - +0.0 55,471 - +1.0 55,471 - -0.9 55,496 + -1.9 55,557 - +0.6 55,568 + +0.1 55,568 + +0.2 55,581 + +0.1 55,582 - +1.1 55,582 - +0.2 55,582 - -0.4 55,607 + -0.9 55,607 + +1.7 55,607 + +1.4 55,620 - +0.8 55,637 + +0.4 55,637 + -0.8 55,637 + +1.4 55,637 + +3.3 55,637 + -0.8 55,638 - +0.0 55,638 - +0.9 55,640 + -0.6 55,640 + -0.6 55,640 + +1.3 55,640 + -0.3 55,640 + -0.6 55,640 + +1.4 55,641 - -0.1 55,641 - +1.9 55,641 - +1.8 55,641 - +0.8 55,641 - +0.3 55,641 - +0.4 55,684 + +1.9 55,685 - -1.7 55,685 - +0.3 55,689 + -0.3 55,689 + -0.6 55,689 + +0.4 55,689 + -0.4 55,689 + -0.9 55,689 + +1.0 55,689 + +0.8 55,690 - -2.6 55,725 + -1.0 55,726 - -0.6 55,726 - +1.4 55,728 + +0.4 55,728 + +0.4 55,729 - +1.4 55,729 - -0.6 55,751 - -1.1 55,751 - +2.0 55,751 - +0.4 55,751 - +2.0 55,751 - -0.7 55,751 - -1.6 55,751 - +0.3 55,751 - -0.9 55,751 - -1.0 55,751 - +1.2 55,753 - -0.6 55,753 - -3.6 55,753 - +1.1 55,753 - +0.4 55,753 - -1.1 55,775 - +1.4
Or see this region's nucleotide sequence