Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23775 and EX31_RS25020 are separated by 364 nucleotides EX31_RS25020 and EX31_RS23785 are separated by 14 nucleotides
EX31_RS23775: EX31_RS23775 - ATP-dependent RNA helicase RhlE, at 519,293 to 520,705
_RS23775
EX31_RS25020: EX31_RS25020 - hypothetical protein, at 521,070 to 522,320
_RS25020
EX31_RS23785: EX31_RS23785 - DUF262 domain-containing protein, at 522,335 to 524,656
_RS23785
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.114 kb on + strand, within EX31_RS23775 at 520.144 kb on + strand, within EX31_RS23775 at 520.144 kb on + strand, within EX31_RS23775 at 520.228 kb on + strand, within EX31_RS23775 at 520.228 kb on + strand, within EX31_RS23775 at 520.228 kb on + strand, within EX31_RS23775 at 520.228 kb on + strand, within EX31_RS23775 at 520.250 kb on + strand, within EX31_RS23775 at 520.250 kb on + strand, within EX31_RS23775 at 520.250 kb on + strand, within EX31_RS23775 at 520.250 kb on + strand, within EX31_RS23775 at 520.251 kb on - strand, within EX31_RS23775 at 520.251 kb on - strand, within EX31_RS23775 at 520.419 kb on - strand, within EX31_RS23775 at 520.703 kb on + strand at 520.703 kb on + strand at 520.704 kb on - strand at 520.704 kb on - strand at 520.723 kb on - strand at 520.786 kb on - strand at 520.833 kb on - strand at 520.846 kb on + strand at 520.846 kb on + strand at 520.847 kb on - strand at 520.849 kb on - strand at 520.849 kb on - strand at 520.849 kb on - strand at 520.853 kb on + strand at 520.854 kb on - strand at 520.854 kb on - strand at 520.896 kb on - strand at 520.920 kb on - strand at 521.033 kb on - strand at 521.058 kb on + strand at 521.058 kb on + strand at 521.058 kb on + strand at 521.062 kb on + strand at 521.127 kb on - strand at 521.131 kb on + strand at 521.159 kb on + strand at 521.180 kb on + strand at 521.224 kb on + strand, within EX31_RS25020 at 521.224 kb on + strand, within EX31_RS25020 at 521.500 kb on + strand, within EX31_RS25020 at 521.502 kb on + strand, within EX31_RS25020 at 521.548 kb on + strand, within EX31_RS25020 at 521.644 kb on - strand, within EX31_RS25020 at 521.802 kb on + strand, within EX31_RS25020 at 521.993 kb on + strand, within EX31_RS25020 at 522.044 kb on + strand, within EX31_RS25020 at 522.178 kb on - strand, within EX31_RS25020 at 522.539 kb on - strand at 522.765 kb on + strand, within EX31_RS23785 at 523.041 kb on - strand, within EX31_RS23785 at 523.100 kb on - strand, within EX31_RS23785 at 523.221 kb on + strand, within EX31_RS23785
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 520,114 + EX31_RS23775 0.58 +0.6 520,144 + EX31_RS23775 0.60 -0.6 520,144 + EX31_RS23775 0.60 -0.5 520,228 + EX31_RS23775 0.66 +0.8 520,228 + EX31_RS23775 0.66 +0.1 520,228 + EX31_RS23775 0.66 -0.1 520,228 + EX31_RS23775 0.66 -0.8 520,250 + EX31_RS23775 0.68 +0.7 520,250 + EX31_RS23775 0.68 -1.0 520,250 + EX31_RS23775 0.68 +2.4 520,250 + EX31_RS23775 0.68 -0.8 520,251 - EX31_RS23775 0.68 +0.2 520,251 - EX31_RS23775 0.68 -0.8 520,419 - EX31_RS23775 0.80 -0.2 520,703 + -2.2 520,703 + +0.8 520,704 - +0.5 520,704 - +0.2 520,723 - -0.6 520,786 - +0.4 520,833 - +0.3 520,846 + +0.2 520,846 + +0.2 520,847 - -0.2 520,849 - -1.5 520,849 - +0.9 520,849 - +0.0 520,853 + +0.0 520,854 - +1.5 520,854 - +2.6 520,896 - +2.1 520,920 - -1.5 521,033 - +0.2 521,058 + +0.6 521,058 + -1.2 521,058 + +1.1 521,062 + -0.9 521,127 - -1.8 521,131 + +0.8 521,159 + +1.5 521,180 + +1.0 521,224 + EX31_RS25020 0.12 +0.3 521,224 + EX31_RS25020 0.12 +1.8 521,500 + EX31_RS25020 0.34 +1.8 521,502 + EX31_RS25020 0.35 +1.6 521,548 + EX31_RS25020 0.38 +1.8 521,644 - EX31_RS25020 0.46 +1.8 521,802 + EX31_RS25020 0.59 +1.4 521,993 + EX31_RS25020 0.74 +1.4 522,044 + EX31_RS25020 0.78 +0.5 522,178 - EX31_RS25020 0.89 -0.6 522,539 - +0.2 522,765 + EX31_RS23785 0.19 -0.8 523,041 - EX31_RS23785 0.30 +0.4 523,100 - EX31_RS23785 0.33 -0.8 523,221 + EX31_RS23785 0.38 -0.2
Or see this region's nucleotide sequence