Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24815 and EX31_RS24820 overlap by 4 nucleotides EX31_RS24820 and EX31_RS25695 are separated by 364 nucleotides
EX31_RS24815: EX31_RS24815 - extensin family protein, at 735,330 to 736,028
_RS24815
EX31_RS24820: EX31_RS24820 - amidohydrolase, at 736,025 to 737,203
_RS24820
EX31_RS25695: EX31_RS25695 - DUF1883 domain-containing protein, at 737,568 to 737,825
_RS25695
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.045 kb on + strand at 735.046 kb on - strand at 735.046 kb on - strand at 735.063 kb on + strand at 735.112 kb on + strand at 735.112 kb on + strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.113 kb on - strand at 735.119 kb on + strand at 735.120 kb on - strand at 735.178 kb on - strand at 735.193 kb on + strand at 735.197 kb on + strand at 735.198 kb on - strand at 735.198 kb on - strand at 735.208 kb on + strand at 735.208 kb on + strand at 735.209 kb on - strand at 735.209 kb on - strand at 735.212 kb on + strand at 735.212 kb on + strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.213 kb on - strand at 735.219 kb on - strand at 735.233 kb on - strand at 735.253 kb on + strand at 735.253 kb on + strand at 735.253 kb on + strand at 735.265 kb on - strand at 735.265 kb on - strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.296 kb on + strand at 735.297 kb on - strand at 735.297 kb on - strand at 735.297 kb on - strand at 735.309 kb on - strand at 735.309 kb on - strand at 735.318 kb on + strand at 735.329 kb on + strand at 735.414 kb on + strand, within EX31_RS24815 at 735.415 kb on - strand, within EX31_RS24815 at 735.416 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.437 kb on + strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.438 kb on - strand, within EX31_RS24815 at 735.441 kb on - strand, within EX31_RS24815 at 735.567 kb on - strand, within EX31_RS24815 at 735.639 kb on + strand, within EX31_RS24815 at 735.640 kb on - strand, within EX31_RS24815 at 735.737 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.756 kb on + strand, within EX31_RS24815 at 735.757 kb on - strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.774 kb on + strand, within EX31_RS24815 at 735.775 kb on - strand, within EX31_RS24815 at 735.775 kb on - strand, within EX31_RS24815 at 735.776 kb on + strand, within EX31_RS24815 at 735.776 kb on + strand, within EX31_RS24815 at 735.906 kb on + strand, within EX31_RS24815 at 735.906 kb on + strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.907 kb on - strand, within EX31_RS24815 at 735.920 kb on - strand, within EX31_RS24815 at 735.940 kb on - strand, within EX31_RS24815 at 735.967 kb on - strand at 736.085 kb on - strand at 736.094 kb on - strand at 736.176 kb on + strand, within EX31_RS24820 at 736.311 kb on + strand, within EX31_RS24820 at 736.311 kb on + strand, within EX31_RS24820 at 736.312 kb on - strand, within EX31_RS24820 at 736.312 kb on - strand, within EX31_RS24820 at 736.369 kb on + strand, within EX31_RS24820 at 736.369 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.469 kb on + strand, within EX31_RS24820 at 736.470 kb on - strand, within EX31_RS24820 at 736.502 kb on - strand, within EX31_RS24820 at 736.523 kb on - strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.564 kb on + strand, within EX31_RS24820 at 736.565 kb on - strand, within EX31_RS24820 at 736.571 kb on + strand, within EX31_RS24820 at 736.572 kb on - strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.615 kb on + strand, within EX31_RS24820 at 736.696 kb on + strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.771 kb on + strand, within EX31_RS24820 at 736.772 kb on - strand, within EX31_RS24820 at 736.801 kb on + strand, within EX31_RS24820 at 736.802 kb on - strand, within EX31_RS24820 at 736.870 kb on + strand, within EX31_RS24820 at 736.921 kb on - strand, within EX31_RS24820 at 736.960 kb on + strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820 at 737.050 kb on - strand, within EX31_RS24820 at 737.054 kb on + strand, within EX31_RS24820 at 737.054 kb on + strand, within EX31_RS24820 at 737.055 kb on - strand, within EX31_RS24820 at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.195 kb on - strand at 737.195 kb on - strand at 737.204 kb on + strand at 737.206 kb on + strand at 737.206 kb on + strand at 737.207 kb on - strand at 737.244 kb on - strand at 737.263 kb on + strand at 737.306 kb on + strand at 737.366 kb on + strand at 737.367 kb on - strand at 737.491 kb on + strand at 737.556 kb on + strand at 737.557 kb on - strand at 737.557 kb on - strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.580 kb on - strand at 737.580 kb on - strand at 737.580 kb on - strand at 737.581 kb on + strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.586 kb on + strand at 737.586 kb on + strand at 737.586 kb on + strand at 737.587 kb on - strand at 737.642 kb on + strand, within EX31_RS25695 at 737.643 kb on - strand, within EX31_RS25695 at 737.644 kb on + strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.659 kb on + strand, within EX31_RS25695 at 737.659 kb on + strand, within EX31_RS25695 at 737.660 kb on - strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.773 kb on - strand, within EX31_RS25695 at 737.773 kb on - strand, within EX31_RS25695 at 737.838 kb on + strand at 737.839 kb on - strand at 737.844 kb on - strand at 737.844 kb on - strand at 737.844 kb on - strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.864 kb on + strand at 737.934 kb on + strand at 737.936 kb on + strand at 737.962 kb on - strand at 737.983 kb on + strand at 737.983 kb on + strand at 737.983 kb on + strand at 737.984 kb on - strand at 737.987 kb on - strand at 738.001 kb on + strand at 738.002 kb on - strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.027 kb on - strand at 738.027 kb on - strand at 738.041 kb on + strand at 738.041 kb on + strand at 738.042 kb on - strand at 738.042 kb on - strand at 738.049 kb on - strand at 738.051 kb on + strand at 738.093 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.145 kb on - strand at 738.145 kb on - strand at 738.145 kb on - strand at 738.148 kb on + strand at 738.149 kb on - strand at 738.149 kb on - strand at 738.149 kb on - strand at 738.166 kb on + strand at 738.169 kb on + strand at 738.169 kb on + strand at 738.174 kb on + strand at 738.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 735,045 + +0.8 735,045 + +1.0 735,045 + +0.3 735,045 + +1.7 735,045 + -0.4 735,046 - +1.5 735,046 - -0.2 735,063 + -1.5 735,112 + +0.9 735,112 + +1.8 735,113 - +1.0 735,113 - +1.6 735,113 - -0.6 735,113 - +0.5 735,113 - +1.0 735,113 - -1.5 735,119 + -0.2 735,120 - +0.0 735,178 - -1.5 735,193 + +1.1 735,197 + +0.4 735,198 - +4.0 735,198 - -0.2 735,208 + +0.8 735,208 + +0.8 735,209 - +1.8 735,209 - +2.8 735,212 + -0.8 735,212 + +0.4 735,213 - -0.2 735,213 - +0.1 735,213 - +0.9 735,213 - -0.4 735,219 - -0.8 735,233 - +0.6 735,253 + -0.6 735,253 + -0.2 735,253 + -0.2 735,265 - -0.5 735,265 - +0.9 735,296 + +1.8 735,296 + +0.2 735,296 + -1.8 735,296 + +0.4 735,297 - +2.1 735,297 - -0.6 735,297 - +0.2 735,309 - +0.8 735,309 - -1.4 735,318 + +1.3 735,329 + +0.5 735,414 + EX31_RS24815 0.12 -1.5 735,415 - EX31_RS24815 0.12 -0.2 735,416 + EX31_RS24815 0.12 +0.8 735,437 + EX31_RS24815 0.15 +0.1 735,437 + EX31_RS24815 0.15 +3.1 735,437 + EX31_RS24815 0.15 -1.5 735,438 - EX31_RS24815 0.15 -1.0 735,438 - EX31_RS24815 0.15 -0.1 735,438 - EX31_RS24815 0.15 -0.2 735,441 - EX31_RS24815 0.16 -0.8 735,567 - EX31_RS24815 0.34 -2.0 735,639 + EX31_RS24815 0.44 -2.5 735,640 - EX31_RS24815 0.44 +0.2 735,737 + EX31_RS24815 0.58 +0.1 735,756 + EX31_RS24815 0.61 +0.4 735,756 + EX31_RS24815 0.61 +2.4 735,756 + EX31_RS24815 0.61 -0.1 735,757 - EX31_RS24815 0.61 +0.2 735,774 + EX31_RS24815 0.64 +0.4 735,774 + EX31_RS24815 0.64 -0.2 735,774 + EX31_RS24815 0.64 +0.4 735,775 - EX31_RS24815 0.64 +1.0 735,775 - EX31_RS24815 0.64 +2.0 735,776 + EX31_RS24815 0.64 +0.1 735,776 + EX31_RS24815 0.64 +0.8 735,906 + EX31_RS24815 0.82 +0.3 735,906 + EX31_RS24815 0.82 +1.4 735,907 - EX31_RS24815 0.83 +0.5 735,907 - EX31_RS24815 0.83 +1.8 735,907 - EX31_RS24815 0.83 +1.8 735,907 - EX31_RS24815 0.83 +0.4 735,920 - EX31_RS24815 0.84 +2.0 735,940 - EX31_RS24815 0.87 +3.4 735,967 - -0.4 736,085 - +1.2 736,094 - +2.4 736,176 + EX31_RS24820 0.13 +0.6 736,311 + EX31_RS24820 0.24 +2.4 736,311 + EX31_RS24820 0.24 +1.8 736,312 - EX31_RS24820 0.24 +0.6 736,312 - EX31_RS24820 0.24 +1.9 736,369 + EX31_RS24820 0.29 -0.2 736,369 + EX31_RS24820 0.29 +0.6 736,469 + EX31_RS24820 0.38 +0.8 736,469 + EX31_RS24820 0.38 +2.5 736,469 + EX31_RS24820 0.38 +0.8 736,470 - EX31_RS24820 0.38 +0.5 736,502 - EX31_RS24820 0.40 +0.4 736,523 - EX31_RS24820 0.42 +0.0 736,564 + EX31_RS24820 0.46 +0.6 736,564 + EX31_RS24820 0.46 +0.8 736,564 + EX31_RS24820 0.46 +1.4 736,565 - EX31_RS24820 0.46 +0.6 736,571 + EX31_RS24820 0.46 +1.6 736,572 - EX31_RS24820 0.46 +1.1 736,579 + EX31_RS24820 0.47 -2.4 736,579 + EX31_RS24820 0.47 +0.5 736,615 + EX31_RS24820 0.50 -0.2 736,696 + EX31_RS24820 0.57 -1.0 736,697 - EX31_RS24820 0.57 +0.8 736,697 - EX31_RS24820 0.57 +1.8 736,771 + EX31_RS24820 0.63 +0.8 736,772 - EX31_RS24820 0.63 -0.4 736,801 + EX31_RS24820 0.66 -0.2 736,802 - EX31_RS24820 0.66 -0.5 736,870 + EX31_RS24820 0.72 -1.5 736,921 - EX31_RS24820 0.76 +1.4 736,960 + EX31_RS24820 0.79 +0.8 736,961 - EX31_RS24820 0.79 +2.1 736,961 - EX31_RS24820 0.79 +1.8 737,050 - EX31_RS24820 0.87 +1.1 737,054 + EX31_RS24820 0.87 +1.2 737,054 + EX31_RS24820 0.87 +0.0 737,055 - EX31_RS24820 0.87 +0.2 737,194 + +0.5 737,194 + +0.8 737,194 + +1.5 737,194 + +0.9 737,194 + +1.4 737,194 + +1.9 737,195 - -1.8 737,195 - +0.4 737,204 + -0.7 737,206 + -0.2 737,206 + -1.2 737,207 - -0.0 737,244 - +0.2 737,263 + -0.4 737,306 + -1.4 737,366 + +1.0 737,367 - +0.8 737,491 + +0.8 737,556 + -0.2 737,557 - +1.5 737,557 - +0.8 737,579 + -0.8 737,579 + +0.3 737,579 + -1.2 737,579 + +1.4 737,580 - +1.5 737,580 - +1.5 737,580 - -0.8 737,581 + +0.8 737,582 - +0.1 737,582 - -0.4 737,582 - +1.0 737,582 - +0.5 737,582 - +0.8 737,582 - +0.8 737,586 + +2.4 737,586 + -1.5 737,586 + -0.4 737,587 - -0.2 737,642 + EX31_RS25695 0.29 -0.2 737,643 - EX31_RS25695 0.29 +0.8 737,644 + EX31_RS25695 0.29 +0.8 737,645 - EX31_RS25695 0.30 +0.1 737,645 - EX31_RS25695 0.30 +0.1 737,645 - EX31_RS25695 0.30 -0.2 737,645 - EX31_RS25695 0.30 -0.6 737,645 - EX31_RS25695 0.30 -0.4 737,659 + EX31_RS25695 0.35 +1.1 737,659 + EX31_RS25695 0.35 -1.0 737,660 - EX31_RS25695 0.36 +0.8 737,772 + EX31_RS25695 0.79 +0.6 737,772 + EX31_RS25695 0.79 +0.0 737,772 + EX31_RS25695 0.79 +1.2 737,772 + EX31_RS25695 0.79 -0.8 737,772 + EX31_RS25695 0.79 +2.4 737,772 + EX31_RS25695 0.79 +0.8 737,772 + EX31_RS25695 0.79 +2.4 737,772 + EX31_RS25695 0.79 -0.2 737,773 - EX31_RS25695 0.79 +1.8 737,773 - EX31_RS25695 0.79 -0.2 737,838 + -2.0 737,839 - -1.2 737,844 - -0.2 737,844 - +1.8 737,844 - +0.3 737,857 + -0.4 737,857 + +1.5 737,857 + +0.5 737,857 + -0.7 737,858 - -2.2 737,858 - +2.4 737,858 - -1.2 737,858 - +0.6 737,858 - -0.8 737,864 + +0.6 737,934 + -1.5 737,936 + -0.2 737,962 - +0.2 737,983 + -2.4 737,983 + +1.5 737,983 + +1.8 737,984 - -0.1 737,987 - -0.2 738,001 + -1.0 738,002 - -0.2 738,026 + +0.5 738,026 + -2.4 738,026 + +0.9 738,026 + +0.8 738,026 + +0.8 738,026 + +0.4 738,027 - +2.1 738,027 - +0.8 738,041 + +0.8 738,041 + +1.2 738,042 - +0.3 738,042 - -0.7 738,049 - +1.5 738,051 + +1.0 738,093 + +0.2 738,144 + +2.8 738,144 + -0.2 738,144 + +2.2 738,144 + +1.4 738,144 + +2.6 738,145 - +0.3 738,145 - -2.4 738,145 - -2.4 738,148 + +0.8 738,149 - +1.8 738,149 - -0.6 738,149 - +1.4 738,166 + -1.3 738,169 + -1.8 738,169 + +0.8 738,174 + -2.5 738,175 - -1.2
Or see this region's nucleotide sequence