Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24765 and EX31_RS24770 are separated by 141 nucleotides EX31_RS24770 and EX31_RS24775 are separated by 3 nucleotides EX31_RS24775 and EX31_RS24780 are separated by 51 nucleotides
EX31_RS24765: EX31_RS24765 - non-heme ferritin, at 724,309 to 724,815
_RS24765
EX31_RS24770: EX31_RS24770 - copper homeostasis periplasmic binding protein CopC, at 724,957 to 725,340
_RS24770
EX31_RS24775: EX31_RS24775 - copper homeostasis membrane protein CopD, at 725,344 to 726,228
_RS24775
EX31_RS24780: EX31_RS24780 - YebY family protein, at 726,280 to 726,615
_RS24780
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.012 kb on + strand at 724.013 kb on - strand at 724.053 kb on - strand at 724.076 kb on + strand at 724.119 kb on + strand at 724.229 kb on - strand at 724.229 kb on - strand at 724.285 kb on + strand at 724.338 kb on + strand at 724.376 kb on + strand, within EX31_RS24765 at 724.486 kb on + strand, within EX31_RS24765 at 724.579 kb on + strand, within EX31_RS24765 at 724.580 kb on - strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.814 kb on - strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.924 kb on + strand at 725.023 kb on - strand, within EX31_RS24770 at 725.088 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.267 kb on - strand, within EX31_RS24770 at 725.267 kb on - strand, within EX31_RS24770 at 725.328 kb on + strand at 725.329 kb on - strand at 725.527 kb on - strand, within EX31_RS24775 at 725.604 kb on - strand, within EX31_RS24775 at 725.639 kb on + strand, within EX31_RS24775 at 725.640 kb on - strand, within EX31_RS24775 at 725.862 kb on + strand, within EX31_RS24775 at 725.862 kb on + strand, within EX31_RS24775 at 725.896 kb on + strand, within EX31_RS24775 at 725.896 kb on + strand, within EX31_RS24775 at 725.896 kb on + strand, within EX31_RS24775 at 725.896 kb on + strand, within EX31_RS24775 at 725.897 kb on - strand, within EX31_RS24775 at 725.897 kb on - strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.901 kb on + strand, within EX31_RS24775 at 725.902 kb on - strand, within EX31_RS24775 at 725.967 kb on + strand, within EX31_RS24775 at 725.985 kb on + strand, within EX31_RS24775 at 725.985 kb on + strand, within EX31_RS24775 at 726.022 kb on + strand, within EX31_RS24775 at 726.023 kb on - strand, within EX31_RS24775 at 726.056 kb on + strand, within EX31_RS24775 at 726.107 kb on + strand, within EX31_RS24775 at 726.140 kb on - strand at 726.140 kb on - strand at 726.140 kb on - strand at 726.140 kb on - strand at 726.144 kb on + strand at 726.243 kb on + strand at 726.243 kb on + strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.244 kb on - strand at 726.247 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.296 kb on + strand at 726.297 kb on - strand at 726.317 kb on + strand, within EX31_RS24780
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 723,978 + +0.3 723,979 - -0.1 723,979 - -0.5 723,979 - -0.1 723,979 - +2.1 724,012 + +0.6 724,013 - +0.0 724,053 - +0.9 724,076 + +0.2 724,119 + +0.8 724,229 - -1.2 724,229 - +0.2 724,285 + -2.7 724,338 + +1.4 724,376 + EX31_RS24765 0.13 -0.1 724,486 + EX31_RS24765 0.35 +0.3 724,579 + EX31_RS24765 0.53 +0.0 724,580 - EX31_RS24765 0.53 -1.2 724,675 + EX31_RS24765 0.72 -0.8 724,675 + EX31_RS24765 0.72 +1.0 724,814 - +1.4 724,922 + -1.5 724,922 + -0.2 724,924 + +0.3 725,023 - EX31_RS24770 0.17 +0.8 725,088 - EX31_RS24770 0.34 +1.8 725,221 - EX31_RS24770 0.69 -1.2 725,221 - EX31_RS24770 0.69 +1.0 725,221 - EX31_RS24770 0.69 +1.2 725,266 + EX31_RS24770 0.80 +1.8 725,266 + EX31_RS24770 0.80 -1.7 725,266 + EX31_RS24770 0.80 +0.8 725,267 - EX31_RS24770 0.81 +0.2 725,267 - EX31_RS24770 0.81 -0.0 725,328 + +0.2 725,329 - -0.5 725,527 - EX31_RS24775 0.21 +2.7 725,604 - EX31_RS24775 0.29 -0.2 725,639 + EX31_RS24775 0.33 +0.8 725,640 - EX31_RS24775 0.33 -0.2 725,862 + EX31_RS24775 0.59 -0.2 725,862 + EX31_RS24775 0.59 -1.5 725,896 + EX31_RS24775 0.62 -0.8 725,896 + EX31_RS24775 0.62 -1.5 725,896 + EX31_RS24775 0.62 -1.1 725,896 + EX31_RS24775 0.62 +2.1 725,897 - EX31_RS24775 0.62 +0.6 725,897 - EX31_RS24775 0.62 -0.4 725,901 + EX31_RS24775 0.63 +3.1 725,901 + EX31_RS24775 0.63 -0.4 725,901 + EX31_RS24775 0.63 -2.0 725,901 + EX31_RS24775 0.63 +2.8 725,901 + EX31_RS24775 0.63 -1.0 725,901 + EX31_RS24775 0.63 +2.4 725,902 - EX31_RS24775 0.63 +0.8 725,967 + EX31_RS24775 0.70 +0.4 725,985 + EX31_RS24775 0.72 -1.6 725,985 + EX31_RS24775 0.72 +0.7 726,022 + EX31_RS24775 0.77 -0.6 726,023 - EX31_RS24775 0.77 -1.4 726,056 + EX31_RS24775 0.80 -0.7 726,107 + EX31_RS24775 0.86 +1.1 726,140 - +0.4 726,140 - -0.1 726,140 - -0.5 726,140 - -0.9 726,144 + -2.7 726,243 + +1.2 726,243 + +0.7 726,244 - -0.0 726,244 - -0.2 726,244 - +1.4 726,244 - -0.8 726,247 + -0.1 726,296 + +1.8 726,296 + +0.6 726,296 + +0.0 726,296 + -0.7 726,296 + -1.8 726,297 - -0.8 726,317 + EX31_RS24780 0.11 -0.0
Or see this region's nucleotide sequence