Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24690 and EX31_RS24695 are separated by 11 nucleotides EX31_RS24695 and EX31_RS24700 are separated by 90 nucleotides EX31_RS24700 and EX31_RS24705 are separated by 591 nucleotides
EX31_RS24690: EX31_RS24690 - PTS mannose transporter subunit IID, at 705,741 to 706,583
_RS24690
EX31_RS24695: EX31_RS24695 - PTS mannose/fructose/sorbose transporter subunit IIC, at 706,595 to 707,392
_RS24695
EX31_RS24700: EX31_RS24700 - PTS mannose transporter subunit IIAB, at 707,483 to 708,445
_RS24700
EX31_RS24705: EX31_RS24705 - TerC family protein, at 709,037 to 710,596
_RS24705
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 706.484 kb on + strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.485 kb on - strand, within EX31_RS24690 at 706.562 kb on + strand at 706.597 kb on - strand at 706.659 kb on + strand at 706.660 kb on - strand at 706.680 kb on + strand, within EX31_RS24695 at 706.681 kb on - strand, within EX31_RS24695 at 706.762 kb on - strand, within EX31_RS24695 at 706.780 kb on - strand, within EX31_RS24695 at 706.831 kb on + strand, within EX31_RS24695 at 706.832 kb on - strand, within EX31_RS24695 at 706.884 kb on - strand, within EX31_RS24695 at 706.897 kb on + strand, within EX31_RS24695 at 706.897 kb on + strand, within EX31_RS24695 at 706.898 kb on - strand, within EX31_RS24695 at 706.898 kb on - strand, within EX31_RS24695 at 706.898 kb on - strand, within EX31_RS24695 at 706.943 kb on - strand, within EX31_RS24695 at 706.943 kb on - strand, within EX31_RS24695 at 706.985 kb on - strand, within EX31_RS24695 at 706.985 kb on - strand, within EX31_RS24695 at 706.985 kb on - strand, within EX31_RS24695 at 707.070 kb on - strand, within EX31_RS24695 at 707.070 kb on - strand, within EX31_RS24695 at 707.158 kb on + strand, within EX31_RS24695 at 707.158 kb on + strand, within EX31_RS24695 at 707.284 kb on + strand, within EX31_RS24695 at 707.285 kb on - strand, within EX31_RS24695 at 707.344 kb on + strand at 707.345 kb on - strand at 707.345 kb on - strand at 707.345 kb on - strand at 707.360 kb on + strand at 707.361 kb on - strand at 707.404 kb on + strand at 707.404 kb on + strand at 707.404 kb on + strand at 707.405 kb on - strand at 707.405 kb on - strand at 707.405 kb on - strand at 707.424 kb on + strand at 707.425 kb on - strand at 707.426 kb on + strand at 707.426 kb on + strand at 707.427 kb on - strand at 707.447 kb on + strand at 707.447 kb on + strand at 707.485 kb on - strand at 707.485 kb on - strand at 707.485 kb on - strand at 707.485 kb on - strand at 707.591 kb on - strand, within EX31_RS24700 at 707.651 kb on - strand, within EX31_RS24700 at 707.660 kb on - strand, within EX31_RS24700 at 707.662 kb on + strand, within EX31_RS24700 at 707.663 kb on - strand, within EX31_RS24700 at 707.671 kb on + strand, within EX31_RS24700 at 707.671 kb on + strand, within EX31_RS24700 at 707.671 kb on + strand, within EX31_RS24700 at 707.672 kb on - strand, within EX31_RS24700 at 707.672 kb on - strand, within EX31_RS24700 at 707.839 kb on + strand, within EX31_RS24700 at 707.879 kb on - strand, within EX31_RS24700 at 707.919 kb on - strand, within EX31_RS24700 at 707.919 kb on - strand, within EX31_RS24700 at 707.969 kb on - strand, within EX31_RS24700 at 707.969 kb on - strand, within EX31_RS24700 at 707.969 kb on - strand, within EX31_RS24700 at 708.167 kb on - strand, within EX31_RS24700 at 708.167 kb on - strand, within EX31_RS24700 at 708.346 kb on + strand, within EX31_RS24700 at 708.431 kb on - strand at 708.433 kb on + strand at 708.433 kb on + strand at 708.434 kb on - strand at 708.434 kb on - strand at 708.440 kb on - strand at 708.440 kb on - strand at 708.450 kb on + strand at 708.463 kb on - strand at 708.463 kb on - strand at 708.463 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.491 kb on + strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.494 kb on - strand at 708.589 kb on - strand at 708.633 kb on - strand at 708.682 kb on + strand at 708.683 kb on - strand at 708.712 kb on - strand at 708.721 kb on + strand at 708.721 kb on + strand at 708.721 kb on + strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.728 kb on + strand at 708.729 kb on - strand at 708.770 kb on + strand at 708.770 kb on + strand at 708.771 kb on - strand at 708.771 kb on - strand at 708.771 kb on - strand at 708.783 kb on + strand at 708.784 kb on - strand at 708.784 kb on - strand at 708.800 kb on + strand at 708.800 kb on + strand at 708.814 kb on + strand at 708.814 kb on + strand at 708.834 kb on + strand at 708.958 kb on - strand at 709.016 kb on + strand at 709.127 kb on - strand at 709.127 kb on - strand at 709.168 kb on + strand at 709.169 kb on - strand at 709.178 kb on - strand at 709.212 kb on + strand, within EX31_RS24705 at 709.212 kb on + strand, within EX31_RS24705 at 709.212 kb on + strand, within EX31_RS24705 at 709.213 kb on - strand, within EX31_RS24705 at 709.329 kb on + strand, within EX31_RS24705
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 706,484 + EX31_RS24690 0.88 -1.0 706,485 - EX31_RS24690 0.88 -0.8 706,485 - EX31_RS24690 0.88 -0.8 706,485 - EX31_RS24690 0.88 -0.8 706,485 - EX31_RS24690 0.88 +0.8 706,485 - EX31_RS24690 0.88 -0.4 706,485 - EX31_RS24690 0.88 +1.4 706,485 - EX31_RS24690 0.88 -0.9 706,562 + -0.8 706,597 - -0.2 706,659 + -2.8 706,660 - -1.0 706,680 + EX31_RS24695 0.11 +0.1 706,681 - EX31_RS24695 0.11 -0.5 706,762 - EX31_RS24695 0.21 +2.5 706,780 - EX31_RS24695 0.23 +1.5 706,831 + EX31_RS24695 0.30 +1.1 706,832 - EX31_RS24695 0.30 -1.5 706,884 - EX31_RS24695 0.36 +1.1 706,897 + EX31_RS24695 0.38 -1.1 706,897 + EX31_RS24695 0.38 +2.4 706,898 - EX31_RS24695 0.38 +1.2 706,898 - EX31_RS24695 0.38 -1.2 706,898 - EX31_RS24695 0.38 -0.1 706,943 - EX31_RS24695 0.44 +2.4 706,943 - EX31_RS24695 0.44 +2.0 706,985 - EX31_RS24695 0.49 +0.2 706,985 - EX31_RS24695 0.49 -0.1 706,985 - EX31_RS24695 0.49 -0.1 707,070 - EX31_RS24695 0.60 -1.7 707,070 - EX31_RS24695 0.60 +0.4 707,158 + EX31_RS24695 0.71 +1.3 707,158 + EX31_RS24695 0.71 +1.4 707,284 + EX31_RS24695 0.86 -1.0 707,285 - EX31_RS24695 0.86 -0.2 707,344 + +0.0 707,345 - +3.6 707,345 - +1.8 707,345 - +0.6 707,360 + +0.4 707,361 - +2.0 707,404 + +0.4 707,404 + -2.8 707,404 + +1.0 707,405 - +0.8 707,405 - +0.6 707,405 - -0.4 707,424 + -1.0 707,425 - +0.8 707,426 + -0.5 707,426 + +0.0 707,427 - -0.2 707,447 + -0.1 707,447 + -2.9 707,485 - +0.2 707,485 - +0.9 707,485 - -0.5 707,485 - -1.1 707,591 - EX31_RS24700 0.11 +0.2 707,651 - EX31_RS24700 0.17 +2.4 707,660 - EX31_RS24700 0.18 -0.8 707,662 + EX31_RS24700 0.19 +1.0 707,663 - EX31_RS24700 0.19 +1.4 707,671 + EX31_RS24700 0.20 -0.8 707,671 + EX31_RS24700 0.20 +0.9 707,671 + EX31_RS24700 0.20 +1.2 707,672 - EX31_RS24700 0.20 +0.5 707,672 - EX31_RS24700 0.20 +0.3 707,839 + EX31_RS24700 0.37 +1.4 707,879 - EX31_RS24700 0.41 +0.8 707,919 - EX31_RS24700 0.45 +1.2 707,919 - EX31_RS24700 0.45 +0.6 707,969 - EX31_RS24700 0.50 +0.5 707,969 - EX31_RS24700 0.50 +0.5 707,969 - EX31_RS24700 0.50 -1.2 708,167 - EX31_RS24700 0.71 +0.8 708,167 - EX31_RS24700 0.71 -0.3 708,346 + EX31_RS24700 0.90 -1.2 708,431 - +1.0 708,433 + -1.5 708,433 + +0.8 708,434 - +0.2 708,434 - -1.4 708,440 - -0.8 708,440 - +1.4 708,450 + -0.8 708,463 - -0.6 708,463 - +0.8 708,463 - +0.6 708,480 - +0.0 708,480 - +2.4 708,480 - +0.0 708,480 - -0.5 708,487 + -0.2 708,487 + +1.6 708,487 + -0.4 708,487 + -0.1 708,487 + +1.6 708,488 - -0.2 708,488 - -0.6 708,488 - +1.1 708,488 - -0.8 708,488 - +2.8 708,488 - -2.5 708,488 - +1.4 708,488 - +0.3 708,488 - +1.4 708,488 - +1.4 708,488 - +0.2 708,488 - -0.9 708,488 - +1.5 708,488 - -0.6 708,491 + -0.9 708,492 - +1.2 708,492 - -0.3 708,492 - -0.8 708,492 - -1.8 708,494 - +0.5 708,589 - -0.8 708,633 - -0.4 708,682 + -1.5 708,683 - -0.2 708,712 - -0.3 708,721 + +1.8 708,721 + +2.1 708,721 + -0.4 708,722 - -1.2 708,722 - -0.8 708,722 - -0.2 708,722 - -0.2 708,722 - +0.8 708,722 - +1.7 708,722 - -0.5 708,722 - +0.6 708,728 + -1.5 708,729 - -0.4 708,770 + +1.1 708,770 + +1.1 708,771 - +1.1 708,771 - -0.8 708,771 - +1.1 708,783 + +0.8 708,784 - -0.8 708,784 - -0.2 708,800 + +1.8 708,800 + -0.1 708,814 + +2.1 708,814 + -0.6 708,834 + -1.1 708,958 - +0.0 709,016 + +1.0 709,127 - +2.0 709,127 - +0.4 709,168 + -0.1 709,169 - +1.4 709,178 - -0.8 709,212 + EX31_RS24705 0.11 -0.6 709,212 + EX31_RS24705 0.11 -0.1 709,212 + EX31_RS24705 0.11 -0.6 709,213 - EX31_RS24705 0.11 +1.8 709,329 + EX31_RS24705 0.19 -0.2
Or see this region's nucleotide sequence