Strain Fitness in Rahnella sp. WP5 around EX31_RS24690

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24680 and EX31_RS24685 are separated by 210 nucleotidesEX31_RS24685 and EX31_RS24690 are separated by 106 nucleotidesEX31_RS24690 and EX31_RS24695 are separated by 11 nucleotidesEX31_RS24695 and EX31_RS24700 are separated by 90 nucleotides EX31_RS24680: EX31_RS24680 - manganese efflux pump MntP, at 704,393 to 704,965 _RS24680 EX31_RS24685: EX31_RS24685 - DUF986 domain-containing protein, at 705,176 to 705,634 _RS24685 EX31_RS24690: EX31_RS24690 - PTS mannose transporter subunit IID, at 705,741 to 706,583 _RS24690 EX31_RS24695: EX31_RS24695 - PTS mannose/fructose/sorbose transporter subunit IIC, at 706,595 to 707,392 _RS24695 EX31_RS24700: EX31_RS24700 - PTS mannose transporter subunit IIAB, at 707,483 to 708,445 _RS24700 Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 704.775 kb on + strand, within EX31_RS24680at 704.776 kb on - strand, within EX31_RS24680at 704.776 kb on - strand, within EX31_RS24680at 704.790 kb on - strand, within EX31_RS24680at 704.790 kb on - strand, within EX31_RS24680at 704.797 kb on + strand, within EX31_RS24680at 704.797 kb on + strand, within EX31_RS24680at 704.797 kb on + strand, within EX31_RS24680at 704.798 kb on - strand, within EX31_RS24680at 704.798 kb on - strand, within EX31_RS24680at 704.798 kb on - strand, within EX31_RS24680at 704.799 kb on + strand, within EX31_RS24680at 704.799 kb on + strand, within EX31_RS24680at 704.799 kb on + strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.800 kb on - strand, within EX31_RS24680at 704.828 kb on + strand, within EX31_RS24680at 704.829 kb on - strand, within EX31_RS24680at 705.004 kb on + strandat 705.029 kb on + strandat 705.295 kb on + strand, within EX31_RS24685at 705.312 kb on + strand, within EX31_RS24685at 705.388 kb on - strand, within EX31_RS24685at 705.420 kb on + strand, within EX31_RS24685at 705.421 kb on - strand, within EX31_RS24685at 705.451 kb on + strand, within EX31_RS24685at 705.542 kb on - strand, within EX31_RS24685at 705.573 kb on + strand, within EX31_RS24685at 705.573 kb on + strand, within EX31_RS24685at 705.574 kb on - strand, within EX31_RS24685at 705.647 kb on + strandat 705.671 kb on + strandat 705.671 kb on + strandat 705.688 kb on + strandat 705.688 kb on + strandat 705.692 kb on + strandat 705.693 kb on - strandat 705.777 kb on - strandat 705.839 kb on + strand, within EX31_RS24690at 705.839 kb on + strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.840 kb on - strand, within EX31_RS24690at 705.859 kb on - strand, within EX31_RS24690at 705.963 kb on - strand, within EX31_RS24690at 706.090 kb on + strand, within EX31_RS24690at 706.091 kb on - strand, within EX31_RS24690at 706.103 kb on - strand, within EX31_RS24690at 706.131 kb on - strand, within EX31_RS24690at 706.181 kb on + strand, within EX31_RS24690at 706.182 kb on - strand, within EX31_RS24690at 706.218 kb on - strand, within EX31_RS24690at 706.218 kb on - strand, within EX31_RS24690at 706.299 kb on - strand, within EX31_RS24690at 706.364 kb on - strand, within EX31_RS24690at 706.364 kb on - strand, within EX31_RS24690at 706.364 kb on - strand, within EX31_RS24690at 706.374 kb on - strand, within EX31_RS24690at 706.432 kb on + strand, within EX31_RS24690at 706.457 kb on + strand, within EX31_RS24690at 706.458 kb on - strand, within EX31_RS24690at 706.458 kb on - strand, within EX31_RS24690at 706.484 kb on + strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.485 kb on - strand, within EX31_RS24690at 706.562 kb on + strandat 706.597 kb on - strandat 706.659 kb on + strandat 706.660 kb on - strandat 706.680 kb on + strand, within EX31_RS24695at 706.681 kb on - strand, within EX31_RS24695at 706.762 kb on - strand, within EX31_RS24695at 706.780 kb on - strand, within EX31_RS24695at 706.831 kb on + strand, within EX31_RS24695at 706.832 kb on - strand, within EX31_RS24695at 706.884 kb on - strand, within EX31_RS24695at 706.897 kb on + strand, within EX31_RS24695at 706.897 kb on + strand, within EX31_RS24695at 706.898 kb on - strand, within EX31_RS24695at 706.898 kb on - strand, within EX31_RS24695at 706.898 kb on - strand, within EX31_RS24695at 706.943 kb on - strand, within EX31_RS24695at 706.943 kb on - strand, within EX31_RS24695at 706.985 kb on - strand, within EX31_RS24695at 706.985 kb on - strand, within EX31_RS24695at 706.985 kb on - strand, within EX31_RS24695at 707.070 kb on - strand, within EX31_RS24695at 707.070 kb on - strand, within EX31_RS24695at 707.158 kb on + strand, within EX31_RS24695at 707.158 kb on + strand, within EX31_RS24695at 707.284 kb on + strand, within EX31_RS24695at 707.285 kb on - strand, within EX31_RS24695at 707.344 kb on + strandat 707.345 kb on - strandat 707.345 kb on - strandat 707.345 kb on - strandat 707.360 kb on + strandat 707.361 kb on - strandat 707.404 kb on + strandat 707.404 kb on + strandat 707.404 kb on + strandat 707.405 kb on - strandat 707.405 kb on - strandat 707.405 kb on - strandat 707.424 kb on + strandat 707.425 kb on - strandat 707.426 kb on + strandat 707.426 kb on + strandat 707.427 kb on - strandat 707.447 kb on + strandat 707.447 kb on + strandat 707.485 kb on - strandat 707.485 kb on - strandat 707.485 kb on - strandat 707.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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704,775 + EX31_RS24680 0.67 -0.3
704,776 - EX31_RS24680 0.67 -1.8
704,776 - EX31_RS24680 0.67 +1.4
704,790 - EX31_RS24680 0.69 +1.3
704,790 - EX31_RS24680 0.69 +0.5
704,797 + EX31_RS24680 0.71 +0.8
704,797 + EX31_RS24680 0.71 +2.4
704,797 + EX31_RS24680 0.71 -1.2
704,798 - EX31_RS24680 0.71 +0.8
704,798 - EX31_RS24680 0.71 +0.0
704,798 - EX31_RS24680 0.71 +0.8
704,799 + EX31_RS24680 0.71 +0.0
704,799 + EX31_RS24680 0.71 +1.8
704,799 + EX31_RS24680 0.71 -0.5
704,800 - EX31_RS24680 0.71 +0.4
704,800 - EX31_RS24680 0.71 +1.6
704,800 - EX31_RS24680 0.71 +1.3
704,800 - EX31_RS24680 0.71 -1.6
704,800 - EX31_RS24680 0.71 -0.9
704,800 - EX31_RS24680 0.71 +1.0
704,828 + EX31_RS24680 0.76 +0.4
704,829 - EX31_RS24680 0.76 +0.8
705,004 + -0.2
705,029 + +2.4
705,295 + EX31_RS24685 0.26 -0.4
705,312 + EX31_RS24685 0.30 +2.1
705,388 - EX31_RS24685 0.46 +0.6
705,420 + EX31_RS24685 0.53 -0.2
705,421 - EX31_RS24685 0.53 -0.9
705,451 + EX31_RS24685 0.60 -2.9
705,542 - EX31_RS24685 0.80 +0.8
705,573 + EX31_RS24685 0.86 +0.5
705,573 + EX31_RS24685 0.86 -0.0
705,574 - EX31_RS24685 0.87 +1.8
705,647 + +1.5
705,671 + -1.0
705,671 + -0.3
705,688 + +2.8
705,688 + +0.6
705,692 + +1.3
705,693 - +0.8
705,777 - +0.8
705,839 + EX31_RS24690 0.12 -0.2
705,839 + EX31_RS24690 0.12 +0.8
705,840 - EX31_RS24690 0.12 -0.2
705,840 - EX31_RS24690 0.12 +0.5
705,840 - EX31_RS24690 0.12 -0.5
705,840 - EX31_RS24690 0.12 -0.3
705,840 - EX31_RS24690 0.12 +1.0
705,840 - EX31_RS24690 0.12 -1.3
705,840 - EX31_RS24690 0.12 +0.4
705,840 - EX31_RS24690 0.12 +0.8
705,840 - EX31_RS24690 0.12 +1.5
705,859 - EX31_RS24690 0.14 -0.2
705,963 - EX31_RS24690 0.26 -1.5
706,090 + EX31_RS24690 0.41 +1.4
706,091 - EX31_RS24690 0.42 +0.2
706,103 - EX31_RS24690 0.43 +2.8
706,131 - EX31_RS24690 0.46 +3.6
706,181 + EX31_RS24690 0.52 +0.8
706,182 - EX31_RS24690 0.52 -1.0
706,218 - EX31_RS24690 0.57 -0.6
706,218 - EX31_RS24690 0.57 -0.0
706,299 - EX31_RS24690 0.66 -1.4
706,364 - EX31_RS24690 0.74 +0.1
706,364 - EX31_RS24690 0.74 +0.8
706,364 - EX31_RS24690 0.74 +0.8
706,374 - EX31_RS24690 0.75 +0.4
706,432 + EX31_RS24690 0.82 +1.8
706,457 + EX31_RS24690 0.85 -0.2
706,458 - EX31_RS24690 0.85 +0.9
706,458 - EX31_RS24690 0.85 -0.0
706,484 + EX31_RS24690 0.88 -1.0
706,485 - EX31_RS24690 0.88 -0.8
706,485 - EX31_RS24690 0.88 -0.8
706,485 - EX31_RS24690 0.88 -0.8
706,485 - EX31_RS24690 0.88 +0.8
706,485 - EX31_RS24690 0.88 -0.4
706,485 - EX31_RS24690 0.88 +1.4
706,485 - EX31_RS24690 0.88 -0.9
706,562 + -0.8
706,597 - -0.2
706,659 + -2.8
706,660 - -1.0
706,680 + EX31_RS24695 0.11 +0.1
706,681 - EX31_RS24695 0.11 -0.5
706,762 - EX31_RS24695 0.21 +2.5
706,780 - EX31_RS24695 0.23 +1.5
706,831 + EX31_RS24695 0.30 +1.1
706,832 - EX31_RS24695 0.30 -1.5
706,884 - EX31_RS24695 0.36 +1.1
706,897 + EX31_RS24695 0.38 -1.1
706,897 + EX31_RS24695 0.38 +2.4
706,898 - EX31_RS24695 0.38 +1.2
706,898 - EX31_RS24695 0.38 -1.2
706,898 - EX31_RS24695 0.38 -0.1
706,943 - EX31_RS24695 0.44 +2.4
706,943 - EX31_RS24695 0.44 +2.0
706,985 - EX31_RS24695 0.49 +0.2
706,985 - EX31_RS24695 0.49 -0.1
706,985 - EX31_RS24695 0.49 -0.1
707,070 - EX31_RS24695 0.60 -1.7
707,070 - EX31_RS24695 0.60 +0.4
707,158 + EX31_RS24695 0.71 +1.3
707,158 + EX31_RS24695 0.71 +1.4
707,284 + EX31_RS24695 0.86 -1.0
707,285 - EX31_RS24695 0.86 -0.2
707,344 + +0.0
707,345 - +3.6
707,345 - +1.8
707,345 - +0.6
707,360 + +0.4
707,361 - +2.0
707,404 + +0.4
707,404 + -2.8
707,404 + +1.0
707,405 - +0.8
707,405 - +0.6
707,405 - -0.4
707,424 + -1.0
707,425 - +0.8
707,426 + -0.5
707,426 + +0.0
707,427 - -0.2
707,447 + -0.1
707,447 + -2.9
707,485 - +0.2
707,485 - +0.9
707,485 - -0.5
707,485 - -1.1

Or see this region's nucleotide sequence