Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25680 and EX31_RS24640 are separated by 144 nucleotides EX31_RS24640 and EX31_RS24645 are separated by 149 nucleotides EX31_RS24645 and EX31_RS24650 are separated by 135 nucleotides EX31_RS24650 and EX31_RS24655 are separated by 60 nucleotides EX31_RS24655 and EX31_RS24660 are separated by 187 nucleotides
EX31_RS25680: EX31_RS25680 - PhoP/PhoQ regulator MgrB, at 698,169 to 698,411
_RS25680
EX31_RS24640: EX31_RS24640 - hypothetical protein, at 698,556 to 698,828
_RS24640
EX31_RS24645: EX31_RS24645 - DUF2591 domain-containing protein, at 698,978 to 699,280
_RS24645
EX31_RS24650: EX31_RS24650 - DUF4060 family protein, at 699,416 to 699,652
_RS24650
EX31_RS24655: EX31_RS24655 - hypothetical protein, at 699,713 to 700,003
_RS24655
EX31_RS24660: EX31_RS24660 - MBL fold metallo-hydrolase, at 700,191 to 701,180
_RS24660
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 697.978 kb on + strand at 698.043 kb on + strand at 698.044 kb on - strand at 698.100 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.168 kb on + strand at 698.169 kb on - strand at 698.169 kb on - strand at 698.217 kb on - strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.288 kb on + strand, within EX31_RS25680 at 698.289 kb on - strand, within EX31_RS25680 at 698.325 kb on + strand, within EX31_RS25680 at 698.325 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.346 kb on + strand, within EX31_RS25680 at 698.347 kb on - strand, within EX31_RS25680 at 698.347 kb on - strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.380 kb on + strand, within EX31_RS25680 at 698.492 kb on - strand at 698.517 kb on + strand at 698.550 kb on + strand at 698.623 kb on + strand, within EX31_RS24640 at 698.689 kb on + strand, within EX31_RS24640 at 698.728 kb on + strand, within EX31_RS24640 at 698.729 kb on - strand, within EX31_RS24640 at 698.732 kb on + strand, within EX31_RS24640 at 698.813 kb on + strand at 698.814 kb on - strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.826 kb on + strand at 698.827 kb on - strand at 698.884 kb on - strand at 698.972 kb on + strand at 699.024 kb on + strand, within EX31_RS24645 at 699.025 kb on - strand, within EX31_RS24645 at 699.025 kb on - strand, within EX31_RS24645 at 699.060 kb on - strand, within EX31_RS24645 at 699.249 kb on + strand, within EX31_RS24645 at 699.250 kb on - strand at 699.262 kb on + strand at 699.276 kb on + strand at 699.297 kb on - strand at 699.297 kb on - strand at 699.371 kb on + strand at 699.431 kb on - strand at 699.440 kb on - strand, within EX31_RS24650 at 699.475 kb on + strand, within EX31_RS24650 at 699.497 kb on + strand, within EX31_RS24650 at 699.498 kb on - strand, within EX31_RS24650 at 699.530 kb on + strand, within EX31_RS24650 at 699.530 kb on + strand, within EX31_RS24650 at 699.531 kb on - strand, within EX31_RS24650 at 699.531 kb on - strand, within EX31_RS24650 at 699.542 kb on + strand, within EX31_RS24650 at 699.590 kb on + strand, within EX31_RS24650 at 699.590 kb on + strand, within EX31_RS24650 at 699.590 kb on + strand, within EX31_RS24650 at 699.590 kb on + strand, within EX31_RS24650 at 699.591 kb on - strand, within EX31_RS24650 at 699.591 kb on - strand, within EX31_RS24650 at 699.591 kb on - strand, within EX31_RS24650 at 699.672 kb on + strand at 699.717 kb on - strand at 699.717 kb on - strand at 699.717 kb on - strand at 699.736 kb on - strand at 699.782 kb on + strand, within EX31_RS24655 at 699.782 kb on + strand, within EX31_RS24655 at 699.917 kb on + strand, within EX31_RS24655 at 699.918 kb on - strand, within EX31_RS24655 at 699.927 kb on + strand, within EX31_RS24655 at 699.928 kb on - strand, within EX31_RS24655 at 699.928 kb on - strand, within EX31_RS24655 at 699.947 kb on - strand, within EX31_RS24655 at 699.949 kb on + strand, within EX31_RS24655 at 700.007 kb on + strand at 700.007 kb on + strand at 700.008 kb on - strand at 700.008 kb on - strand at 700.033 kb on + strand at 700.045 kb on + strand at 700.069 kb on + strand at 700.070 kb on - strand at 700.089 kb on - strand at 700.110 kb on - strand at 700.110 kb on - strand at 700.122 kb on - strand at 700.122 kb on - strand at 700.122 kb on - strand at 700.122 kb on - strand at 700.125 kb on + strand at 700.126 kb on - strand at 700.126 kb on - strand at 700.126 kb on - strand at 700.126 kb on - strand at 700.130 kb on + strand at 700.130 kb on + strand at 700.131 kb on - strand at 700.134 kb on + strand at 700.152 kb on + strand at 700.171 kb on + strand at 700.172 kb on - strand at 700.190 kb on + strand at 700.190 kb on + strand at 700.190 kb on + strand at 700.190 kb on + strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.191 kb on - strand at 700.213 kb on - strand at 700.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 697,978 + +0.8 698,043 + -0.2 698,044 - +0.1 698,100 + +0.2 698,168 + +0.8 698,168 + +1.4 698,168 + +1.2 698,168 + +0.8 698,168 + -0.0 698,168 + -0.1 698,169 - +0.8 698,169 - +3.4 698,217 - EX31_RS25680 0.20 -1.5 698,288 + EX31_RS25680 0.49 +1.3 698,288 + EX31_RS25680 0.49 -0.5 698,288 + EX31_RS25680 0.49 -0.2 698,289 - EX31_RS25680 0.49 -1.5 698,325 + EX31_RS25680 0.64 +1.0 698,325 + EX31_RS25680 0.64 +0.9 698,346 + EX31_RS25680 0.73 +1.3 698,346 + EX31_RS25680 0.73 +1.8 698,346 + EX31_RS25680 0.73 +0.1 698,346 + EX31_RS25680 0.73 +0.4 698,346 + EX31_RS25680 0.73 -0.0 698,346 + EX31_RS25680 0.73 +0.1 698,347 - EX31_RS25680 0.73 -0.2 698,347 - EX31_RS25680 0.73 -1.0 698,380 + EX31_RS25680 0.87 +0.6 698,380 + EX31_RS25680 0.87 +0.8 698,380 + EX31_RS25680 0.87 +2.5 698,380 + EX31_RS25680 0.87 +0.5 698,380 + EX31_RS25680 0.87 -0.2 698,380 + EX31_RS25680 0.87 +0.3 698,380 + EX31_RS25680 0.87 +0.2 698,380 + EX31_RS25680 0.87 +1.9 698,380 + EX31_RS25680 0.87 +1.0 698,492 - +0.1 698,517 + +0.5 698,550 + +2.4 698,623 + EX31_RS24640 0.25 +0.5 698,689 + EX31_RS24640 0.49 +1.2 698,728 + EX31_RS24640 0.63 +0.7 698,729 - EX31_RS24640 0.63 +0.2 698,732 + EX31_RS24640 0.64 -0.2 698,813 + +0.4 698,814 - +2.6 698,826 + +0.2 698,826 + +1.2 698,826 + +0.8 698,826 + +0.8 698,826 + -0.4 698,827 - +0.5 698,884 - +0.6 698,972 + +0.8 699,024 + EX31_RS24645 0.15 -0.5 699,025 - EX31_RS24645 0.16 -1.2 699,025 - EX31_RS24645 0.16 -0.2 699,060 - EX31_RS24645 0.27 -1.0 699,249 + EX31_RS24645 0.89 -0.2 699,250 - +0.8 699,262 + +1.4 699,276 + +0.4 699,297 - -1.0 699,297 - +0.8 699,371 + -0.4 699,431 - +0.8 699,440 - EX31_RS24650 0.10 +1.5 699,475 + EX31_RS24650 0.25 +0.3 699,497 + EX31_RS24650 0.34 +0.4 699,498 - EX31_RS24650 0.35 +0.6 699,530 + EX31_RS24650 0.48 -1.8 699,530 + EX31_RS24650 0.48 -1.4 699,531 - EX31_RS24650 0.49 -0.4 699,531 - EX31_RS24650 0.49 +0.0 699,542 + EX31_RS24650 0.53 +0.6 699,590 + EX31_RS24650 0.73 -1.5 699,590 + EX31_RS24650 0.73 +0.8 699,590 + EX31_RS24650 0.73 +1.8 699,590 + EX31_RS24650 0.73 +0.0 699,591 - EX31_RS24650 0.74 -0.8 699,591 - EX31_RS24650 0.74 +0.8 699,591 - EX31_RS24650 0.74 +1.0 699,672 + -0.2 699,717 - -1.9 699,717 - +0.8 699,717 - +1.1 699,736 - -0.0 699,782 + EX31_RS24655 0.24 +0.3 699,782 + EX31_RS24655 0.24 +0.4 699,917 + EX31_RS24655 0.70 +0.6 699,918 - EX31_RS24655 0.70 -1.5 699,927 + EX31_RS24655 0.74 -0.2 699,928 - EX31_RS24655 0.74 -0.8 699,928 - EX31_RS24655 0.74 -0.2 699,947 - EX31_RS24655 0.80 -0.8 699,949 + EX31_RS24655 0.81 -1.2 700,007 + +0.5 700,007 + +1.5 700,008 - +1.5 700,008 - -0.2 700,033 + +0.5 700,045 + +0.3 700,069 + -0.4 700,070 - +1.2 700,089 - -0.4 700,110 - -0.6 700,110 - +0.8 700,122 - -0.2 700,122 - +0.0 700,122 - +0.8 700,122 - -0.7 700,125 + +0.8 700,126 - -0.8 700,126 - +1.2 700,126 - -0.1 700,126 - +0.9 700,130 + -0.6 700,130 + +0.5 700,131 - -1.0 700,134 + +2.1 700,152 + +0.3 700,171 + -0.2 700,172 - +0.8 700,190 + +1.2 700,190 + +0.5 700,190 + -0.5 700,190 + +2.0 700,191 - +0.6 700,191 - +0.8 700,191 - -0.2 700,191 - -0.5 700,191 - +0.1 700,191 - +0.0 700,191 - -1.0 700,191 - +0.3 700,191 - -1.4 700,213 - +1.4 700,250 + +0.4
Or see this region's nucleotide sequence