Strain Fitness in Rahnella sp. WP5 around EX31_RS24590

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24580 and EX31_RS24585 overlap by 8 nucleotidesEX31_RS24585 and EX31_RS24590 are separated by 132 nucleotidesEX31_RS24590 and EX31_RS24595 are separated by 340 nucleotidesEX31_RS24595 and EX31_RS24600 are separated by 152 nucleotides EX31_RS24580: EX31_RS24580 - NUDIX hydrolase, at 687,236 to 687,682 _RS24580 EX31_RS24585: EX31_RS24585 - 23S rRNA pseudouridine(2457) synthase RluE, at 687,675 to 688,301 _RS24585 EX31_RS24590: EX31_RS24590 - NADP-dependent isocitrate dehydrogenase, at 688,434 to 689,687 _RS24590 EX31_RS24595: EX31_RS24595 - membrane protein, at 690,028 to 690,519 _RS24595 EX31_RS24600: EX31_RS24600 - hypothetical protein, at 690,672 to 690,905 _RS24600 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2 3at 687.479 kb on + strand, within EX31_RS24580at 687.479 kb on + strand, within EX31_RS24580at 687.480 kb on - strand, within EX31_RS24580at 687.480 kb on - strand, within EX31_RS24580at 687.480 kb on - strand, within EX31_RS24580at 687.480 kb on - strand, within EX31_RS24580at 687.480 kb on - strand, within EX31_RS24580at 687.525 kb on + strand, within EX31_RS24580at 687.525 kb on + strand, within EX31_RS24580at 687.525 kb on + strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.526 kb on - strand, within EX31_RS24580at 687.551 kb on + strand, within EX31_RS24580at 687.552 kb on - strand, within EX31_RS24580at 687.552 kb on - strand, within EX31_RS24580at 687.665 kb on - strandat 687.712 kb on - strandat 687.815 kb on - strand, within EX31_RS24585at 687.815 kb on - strand, within EX31_RS24585at 687.815 kb on - strand, within EX31_RS24585at 687.816 kb on + strand, within EX31_RS24585at 687.817 kb on - strand, within EX31_RS24585at 688.003 kb on + strand, within EX31_RS24585at 688.003 kb on + strand, within EX31_RS24585at 688.003 kb on + strand, within EX31_RS24585at 688.003 kb on + strand, within EX31_RS24585at 688.003 kb on + strand, within EX31_RS24585at 688.004 kb on - strand, within EX31_RS24585at 688.004 kb on - strand, within EX31_RS24585at 688.004 kb on - strand, within EX31_RS24585at 688.004 kb on - strand, within EX31_RS24585at 688.004 kb on - strand, within EX31_RS24585at 688.006 kb on + strand, within EX31_RS24585at 688.007 kb on - strand, within EX31_RS24585at 688.007 kb on - strand, within EX31_RS24585at 688.007 kb on - strand, within EX31_RS24585at 688.007 kb on - strand, within EX31_RS24585at 688.077 kb on + strand, within EX31_RS24585at 688.114 kb on + strand, within EX31_RS24585at 688.115 kb on - strand, within EX31_RS24585at 688.126 kb on - strand, within EX31_RS24585at 688.136 kb on - strand, within EX31_RS24585at 688.142 kb on + strand, within EX31_RS24585at 688.244 kb on + strandat 688.268 kb on + strandat 688.291 kb on - strandat 688.301 kb on + strandat 688.333 kb on - strandat 688.334 kb on + strandat 688.334 kb on + strandat 688.334 kb on + strandat 688.334 kb on + strandat 688.380 kb on + strandat 688.380 kb on + strandat 689.685 kb on + strandat 689.685 kb on + strandat 689.810 kb on - strandat 689.921 kb on - strandat 689.928 kb on - strandat 689.989 kb on - strandat 689.994 kb on + strandat 690.034 kb on - strandat 690.124 kb on - strand, within EX31_RS24595at 690.153 kb on + strand, within EX31_RS24595at 690.154 kb on - strand, within EX31_RS24595at 690.195 kb on + strand, within EX31_RS24595at 690.234 kb on + strand, within EX31_RS24595at 690.259 kb on - strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.260 kb on + strand, within EX31_RS24595at 690.261 kb on - strand, within EX31_RS24595at 690.261 kb on - strand, within EX31_RS24595at 690.291 kb on + strand, within EX31_RS24595at 690.292 kb on - strand, within EX31_RS24595at 690.295 kb on + strand, within EX31_RS24595at 690.431 kb on - strand, within EX31_RS24595at 690.458 kb on + strand, within EX31_RS24595at 690.459 kb on - strand, within EX31_RS24595at 690.510 kb on - strandat 690.518 kb on - strandat 690.528 kb on + strandat 690.539 kb on + strandat 690.552 kb on - strandat 690.577 kb on - strandat 690.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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687,479 + EX31_RS24580 0.54 +0.3
687,479 + EX31_RS24580 0.54 -1.8
687,480 - EX31_RS24580 0.55 +1.0
687,480 - EX31_RS24580 0.55 -1.2
687,480 - EX31_RS24580 0.55 +0.6
687,480 - EX31_RS24580 0.55 -1.0
687,480 - EX31_RS24580 0.55 +0.8
687,525 + EX31_RS24580 0.65 -0.4
687,525 + EX31_RS24580 0.65 -1.4
687,525 + EX31_RS24580 0.65 +0.1
687,526 - EX31_RS24580 0.65 -0.2
687,526 - EX31_RS24580 0.65 -1.5
687,526 - EX31_RS24580 0.65 +0.4
687,526 - EX31_RS24580 0.65 +0.2
687,526 - EX31_RS24580 0.65 +0.8
687,526 - EX31_RS24580 0.65 -0.4
687,551 + EX31_RS24580 0.70 +0.0
687,552 - EX31_RS24580 0.71 -0.4
687,552 - EX31_RS24580 0.71 +1.4
687,665 - +2.4
687,712 - +1.4
687,815 - EX31_RS24585 0.22 -0.2
687,815 - EX31_RS24585 0.22 -1.5
687,815 - EX31_RS24585 0.22 -0.3
687,816 + EX31_RS24585 0.22 +2.4
687,817 - EX31_RS24585 0.23 -0.5
688,003 + EX31_RS24585 0.52 -1.5
688,003 + EX31_RS24585 0.52 -0.1
688,003 + EX31_RS24585 0.52 +0.8
688,003 + EX31_RS24585 0.52 +0.8
688,003 + EX31_RS24585 0.52 +0.2
688,004 - EX31_RS24585 0.52 +0.8
688,004 - EX31_RS24585 0.52 -0.8
688,004 - EX31_RS24585 0.52 -0.5
688,004 - EX31_RS24585 0.52 -1.2
688,004 - EX31_RS24585 0.52 -1.0
688,006 + EX31_RS24585 0.53 +1.2
688,007 - EX31_RS24585 0.53 -1.0
688,007 - EX31_RS24585 0.53 -0.6
688,007 - EX31_RS24585 0.53 +0.4
688,007 - EX31_RS24585 0.53 -0.8
688,077 + EX31_RS24585 0.64 -0.2
688,114 + EX31_RS24585 0.70 -1.2
688,115 - EX31_RS24585 0.70 +0.1
688,126 - EX31_RS24585 0.72 -0.5
688,136 - EX31_RS24585 0.74 -0.0
688,142 + EX31_RS24585 0.74 +0.6
688,244 + +0.8
688,268 + +1.1
688,291 - -0.1
688,301 + -0.7
688,333 - +1.2
688,334 + -2.2
688,334 + -1.1
688,334 + +0.8
688,334 + +0.8
688,380 + +0.8
688,380 + +0.2
689,685 + +0.2
689,685 + +0.1
689,810 - -0.4
689,921 - +0.8
689,928 - +0.5
689,989 - +1.5
689,994 + +2.2
690,034 - +1.3
690,124 - EX31_RS24595 0.20 +2.0
690,153 + EX31_RS24595 0.25 +1.0
690,154 - EX31_RS24595 0.26 +1.4
690,195 + EX31_RS24595 0.34 +0.5
690,234 + EX31_RS24595 0.42 +1.0
690,259 - EX31_RS24595 0.47 +0.2
690,260 + EX31_RS24595 0.47 -1.4
690,260 + EX31_RS24595 0.47 -0.2
690,260 + EX31_RS24595 0.47 +0.8
690,260 + EX31_RS24595 0.47 +0.5
690,260 + EX31_RS24595 0.47 +0.8
690,260 + EX31_RS24595 0.47 +0.4
690,261 - EX31_RS24595 0.47 +0.8
690,261 - EX31_RS24595 0.47 +1.8
690,291 + EX31_RS24595 0.53 -0.0
690,292 - EX31_RS24595 0.54 +0.3
690,295 + EX31_RS24595 0.54 -1.0
690,431 - EX31_RS24595 0.82 -0.1
690,458 + EX31_RS24595 0.87 -1.5
690,459 - EX31_RS24595 0.88 -0.5
690,510 - +2.8
690,518 - -0.2
690,528 + +1.2
690,539 + -0.2
690,552 - +0.8
690,577 - +0.8
690,637 + +0.6

Or see this region's nucleotide sequence