Strain Fitness in Rahnella sp. WP5 around EX31_RS24450

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS24445 and EX31_RS24450 are separated by 226 nucleotidesEX31_RS24450 and EX31_RS24455 are separated by 17 nucleotides EX31_RS24445: EX31_RS24445 - beta-ketoacyl-ACP synthase II, at 656,491 to 657,732 _RS24445 EX31_RS24450: EX31_RS24450 - aminodeoxychorismate lyase, at 657,959 to 658,756 _RS24450 EX31_RS24455: EX31_RS24455 - endolytic transglycosylase MltG, at 658,774 to 659,799 _RS24455 Position (kb) 657 658 659Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 656.968 kb on - strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.997 kb on + strand, within EX31_RS24445at 656.998 kb on - strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.000 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.018 kb on + strand, within EX31_RS24445at 657.019 kb on - strand, within EX31_RS24445at 657.028 kb on + strand, within EX31_RS24445at 657.030 kb on + strand, within EX31_RS24445at 657.031 kb on - strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.201 kb on + strand, within EX31_RS24445at 657.202 kb on - strand, within EX31_RS24445at 657.204 kb on + strand, within EX31_RS24445at 657.204 kb on + strand, within EX31_RS24445at 657.204 kb on + strand, within EX31_RS24445at 657.204 kb on + strand, within EX31_RS24445at 657.205 kb on - strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.292 kb on + strand, within EX31_RS24445at 657.293 kb on - strand, within EX31_RS24445at 657.297 kb on + strand, within EX31_RS24445at 657.297 kb on + strand, within EX31_RS24445at 657.297 kb on + strand, within EX31_RS24445at 657.297 kb on + strand, within EX31_RS24445at 657.298 kb on - strand, within EX31_RS24445at 657.388 kb on + strand, within EX31_RS24445at 657.389 kb on - strand, within EX31_RS24445at 657.448 kb on - strand, within EX31_RS24445at 657.480 kb on + strand, within EX31_RS24445at 657.660 kb on + strandat 657.660 kb on + strandat 657.660 kb on + strandat 657.660 kb on + strandat 657.660 kb on + strandat 657.660 kb on + strandat 657.660 kb on + strandat 657.661 kb on - strandat 657.790 kb on + strandat 657.806 kb on + strandat 657.806 kb on + strandat 657.856 kb on + strandat 657.857 kb on - strandat 657.857 kb on - strandat 657.866 kb on + strandat 657.866 kb on + strandat 657.866 kb on + strandat 657.866 kb on + strandat 657.867 kb on - strandat 657.910 kb on + strandat 657.910 kb on + strandat 657.910 kb on + strandat 657.911 kb on - strandat 657.932 kb on + strandat 657.932 kb on + strandat 657.932 kb on + strandat 657.932 kb on + strandat 657.932 kb on + strandat 657.933 kb on - strandat 657.954 kb on + strandat 657.954 kb on + strandat 657.954 kb on + strandat 657.954 kb on + strandat 657.954 kb on + strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.955 kb on - strandat 657.967 kb on + strandat 657.968 kb on - strandat 658.033 kb on + strandat 658.081 kb on + strand, within EX31_RS24450at 658.348 kb on + strand, within EX31_RS24450at 658.348 kb on + strand, within EX31_RS24450at 658.372 kb on - strand, within EX31_RS24450at 658.381 kb on + strand, within EX31_RS24450at 658.555 kb on + strand, within EX31_RS24450at 658.709 kb on + strandat 658.709 kb on + strandat 658.768 kb on + strandat 658.902 kb on + strand, within EX31_RS24455at 658.946 kb on + strand, within EX31_RS24455at 658.946 kb on + strand, within EX31_RS24455at 658.946 kb on + strand, within EX31_RS24455at 658.946 kb on + strand, within EX31_RS24455at 658.991 kb on + strand, within EX31_RS24455at 658.991 kb on + strand, within EX31_RS24455at 658.994 kb on + strand, within EX31_RS24455at 658.994 kb on + strand, within EX31_RS24455at 658.994 kb on + strand, within EX31_RS24455at 658.994 kb on + strand, within EX31_RS24455at 658.994 kb on + strand, within EX31_RS24455at 659.000 kb on + strand, within EX31_RS24455at 659.000 kb on + strand, within EX31_RS24455at 659.000 kb on + strand, within EX31_RS24455at 659.031 kb on + strand, within EX31_RS24455at 659.060 kb on + strand, within EX31_RS24455at 659.060 kb on + strand, within EX31_RS24455at 659.060 kb on + strand, within EX31_RS24455at 659.060 kb on + strand, within EX31_RS24455at 659.060 kb on + strand, within EX31_RS24455at 659.130 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.272 kb on + strand, within EX31_RS24455at 659.278 kb on + strand, within EX31_RS24455at 659.300 kb on + strand, within EX31_RS24455at 659.300 kb on + strand, within EX31_RS24455at 659.324 kb on + strand, within EX31_RS24455at 659.324 kb on + strand, within EX31_RS24455at 659.380 kb on + strand, within EX31_RS24455at 659.382 kb on + strand, within EX31_RS24455at 659.397 kb on + strand, within EX31_RS24455at 659.472 kb on + strand, within EX31_RS24455at 659.472 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.542 kb on + strand, within EX31_RS24455at 659.587 kb on + strand, within EX31_RS24455at 659.587 kb on + strand, within EX31_RS24455at 659.587 kb on + strand, within EX31_RS24455at 659.592 kb on + strand, within EX31_RS24455at 659.592 kb on + strand, within EX31_RS24455at 659.592 kb on + strand, within EX31_RS24455at 659.592 kb on + strand, within EX31_RS24455at 659.596 kb on + strand, within EX31_RS24455at 659.596 kb on + strand, within EX31_RS24455at 659.596 kb on + strand, within EX31_RS24455at 659.596 kb on + strand, within EX31_RS24455at 659.596 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.687 kb on + strand, within EX31_RS24455at 659.689 kb on + strand, within EX31_RS24455at 659.689 kb on + strand, within EX31_RS24455at 659.718 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
656,968 - EX31_RS24445 0.38 +0.1
656,997 + EX31_RS24445 0.41 +0.8
656,997 + EX31_RS24445 0.41 -0.4
656,997 + EX31_RS24445 0.41 +1.8
656,997 + EX31_RS24445 0.41 +0.3
656,997 + EX31_RS24445 0.41 -3.1
656,997 + EX31_RS24445 0.41 +0.3
656,998 - EX31_RS24445 0.41 +1.0
657,000 + EX31_RS24445 0.41 -0.1
657,000 + EX31_RS24445 0.41 -0.2
657,000 + EX31_RS24445 0.41 +0.8
657,000 + EX31_RS24445 0.41 +0.4
657,000 + EX31_RS24445 0.41 +0.8
657,000 + EX31_RS24445 0.41 +0.2
657,018 + EX31_RS24445 0.42 -0.2
657,018 + EX31_RS24445 0.42 -0.1
657,018 + EX31_RS24445 0.42 -1.0
657,018 + EX31_RS24445 0.42 -0.6
657,018 + EX31_RS24445 0.42 +0.4
657,018 + EX31_RS24445 0.42 -1.0
657,018 + EX31_RS24445 0.42 +0.7
657,019 - EX31_RS24445 0.43 +0.8
657,028 + EX31_RS24445 0.43 +1.2
657,030 + EX31_RS24445 0.43 +1.0
657,031 - EX31_RS24445 0.43 +0.8
657,201 + EX31_RS24445 0.57 +1.8
657,201 + EX31_RS24445 0.57 -0.1
657,201 + EX31_RS24445 0.57 +1.2
657,201 + EX31_RS24445 0.57 +1.6
657,201 + EX31_RS24445 0.57 +0.3
657,201 + EX31_RS24445 0.57 +0.8
657,202 - EX31_RS24445 0.57 +0.8
657,204 + EX31_RS24445 0.57 +0.5
657,204 + EX31_RS24445 0.57 +0.4
657,204 + EX31_RS24445 0.57 +1.6
657,204 + EX31_RS24445 0.57 +1.2
657,205 - EX31_RS24445 0.57 -0.8
657,292 + EX31_RS24445 0.64 +0.4
657,292 + EX31_RS24445 0.64 +0.0
657,292 + EX31_RS24445 0.64 -0.5
657,292 + EX31_RS24445 0.64 +1.8
657,292 + EX31_RS24445 0.64 -0.2
657,292 + EX31_RS24445 0.64 -0.2
657,292 + EX31_RS24445 0.64 +0.2
657,292 + EX31_RS24445 0.64 +0.5
657,292 + EX31_RS24445 0.64 -0.7
657,293 - EX31_RS24445 0.65 -0.2
657,297 + EX31_RS24445 0.65 +0.1
657,297 + EX31_RS24445 0.65 +0.5
657,297 + EX31_RS24445 0.65 -0.9
657,297 + EX31_RS24445 0.65 -1.9
657,298 - EX31_RS24445 0.65 -0.2
657,388 + EX31_RS24445 0.72 -2.0
657,389 - EX31_RS24445 0.72 +0.8
657,448 - EX31_RS24445 0.77 +0.4
657,480 + EX31_RS24445 0.80 +0.8
657,660 + +0.1
657,660 + +0.9
657,660 + -0.2
657,660 + -0.2
657,660 + -0.4
657,660 + -1.5
657,660 + +0.8
657,661 - -0.1
657,790 + -0.1
657,806 + -0.8
657,806 + +0.8
657,856 + -0.8
657,857 - -1.5
657,857 - +0.6
657,866 + +0.2
657,866 + +1.0
657,866 + +0.8
657,866 + +2.0
657,867 - +1.1
657,910 + +1.0
657,910 + +1.2
657,910 + +0.8
657,911 - -1.5
657,932 + -0.2
657,932 + -0.4
657,932 + +0.4
657,932 + +1.4
657,932 + -1.0
657,933 - +0.3
657,954 + -2.7
657,954 + +0.8
657,954 + -1.2
657,954 + -0.2
657,954 + +2.5
657,955 - +1.4
657,955 - +0.5
657,955 - +0.8
657,955 - -1.5
657,955 - -0.1
657,955 - +0.0
657,955 - -1.2
657,967 + +0.2
657,968 - -0.8
658,033 + +1.8
658,081 + EX31_RS24450 0.15 -0.5
658,348 + EX31_RS24450 0.49 -1.2
658,348 + EX31_RS24450 0.49 -0.8
658,372 - EX31_RS24450 0.52 +0.8
658,381 + EX31_RS24450 0.53 +0.8
658,555 + EX31_RS24450 0.75 -0.2
658,709 + -2.3
658,709 + -0.7
658,768 + +1.0
658,902 + EX31_RS24455 0.12 +0.3
658,946 + EX31_RS24455 0.17 -0.1
658,946 + EX31_RS24455 0.17 -1.8
658,946 + EX31_RS24455 0.17 -1.2
658,946 + EX31_RS24455 0.17 -2.2
658,991 + EX31_RS24455 0.21 +0.0
658,991 + EX31_RS24455 0.21 +2.8
658,994 + EX31_RS24455 0.21 -2.5
658,994 + EX31_RS24455 0.21 -0.5
658,994 + EX31_RS24455 0.21 -0.2
658,994 + EX31_RS24455 0.21 -0.2
658,994 + EX31_RS24455 0.21 +1.1
659,000 + EX31_RS24455 0.22 +2.1
659,000 + EX31_RS24455 0.22 -0.2
659,000 + EX31_RS24455 0.22 +1.0
659,031 + EX31_RS24455 0.25 +0.8
659,060 + EX31_RS24455 0.28 -1.2
659,060 + EX31_RS24455 0.28 -1.5
659,060 + EX31_RS24455 0.28 +1.4
659,060 + EX31_RS24455 0.28 +0.8
659,060 + EX31_RS24455 0.28 +0.8
659,130 + EX31_RS24455 0.35 +0.1
659,272 + EX31_RS24455 0.49 +1.1
659,272 + EX31_RS24455 0.49 +0.8
659,272 + EX31_RS24455 0.49 +0.0
659,272 + EX31_RS24455 0.49 +1.0
659,272 + EX31_RS24455 0.49 -0.8
659,272 + EX31_RS24455 0.49 +0.8
659,278 + EX31_RS24455 0.49 +0.5
659,300 + EX31_RS24455 0.51 -1.0
659,300 + EX31_RS24455 0.51 +1.1
659,324 + EX31_RS24455 0.54 +1.1
659,324 + EX31_RS24455 0.54 -1.0
659,380 + EX31_RS24455 0.59 +1.6
659,382 + EX31_RS24455 0.59 -0.4
659,397 + EX31_RS24455 0.61 +0.2
659,472 + EX31_RS24455 0.68 +0.0
659,472 + EX31_RS24455 0.68 +0.3
659,542 + EX31_RS24455 0.75 -1.8
659,542 + EX31_RS24455 0.75 +0.4
659,542 + EX31_RS24455 0.75 -0.4
659,542 + EX31_RS24455 0.75 -0.2
659,542 + EX31_RS24455 0.75 -0.6
659,542 + EX31_RS24455 0.75 -1.8
659,542 + EX31_RS24455 0.75 +1.0
659,587 + EX31_RS24455 0.79 +1.1
659,587 + EX31_RS24455 0.79 -1.2
659,587 + EX31_RS24455 0.79 -0.2
659,592 + EX31_RS24455 0.80 -0.8
659,592 + EX31_RS24455 0.80 -0.1
659,592 + EX31_RS24455 0.80 +0.1
659,592 + EX31_RS24455 0.80 -0.9
659,596 + EX31_RS24455 0.80 -0.2
659,596 + EX31_RS24455 0.80 +1.4
659,596 + EX31_RS24455 0.80 +0.9
659,596 + EX31_RS24455 0.80 +1.3
659,596 + EX31_RS24455 0.80 -0.8
659,687 + EX31_RS24455 0.89 +0.2
659,687 + EX31_RS24455 0.89 +2.4
659,687 + EX31_RS24455 0.89 -0.5
659,687 + EX31_RS24455 0.89 +0.8
659,687 + EX31_RS24455 0.89 +1.0
659,687 + EX31_RS24455 0.89 +0.6
659,689 + EX31_RS24455 0.89 -0.2
659,689 + EX31_RS24455 0.89 -0.5
659,718 + -1.0

Or see this region's nucleotide sequence