Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24315 and EX31_RS24320 are separated by 265 nucleotides EX31_RS24320 and EX31_RS24325 are separated by 211 nucleotides EX31_RS24325 and EX31_RS24330 are separated by 376 nucleotides
EX31_RS24315: EX31_RS24315 - multidrug efflux MFS transporter MdtG, at 627,947 to 629,185
_RS24315
EX31_RS24320: EX31_RS24320 - DoxX family protein, at 629,451 to 629,885
_RS24320
EX31_RS24325: EX31_RS24325 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 630,097 to 631,032
_RS24325
EX31_RS24330: EX31_RS24330 - NADH:flavin oxidoreductase/NADH oxidase, at 631,409 to 632,506
_RS24330
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 629.131 kb on + strand at 629.131 kb on + strand at 629.131 kb on + strand at 629.247 kb on + strand at 629.247 kb on + strand at 629.247 kb on + strand at 629.248 kb on - strand at 629.251 kb on + strand at 629.251 kb on + strand at 629.252 kb on - strand at 629.252 kb on - strand at 629.282 kb on + strand at 629.286 kb on + strand at 629.287 kb on - strand at 629.317 kb on + strand at 629.433 kb on + strand at 629.437 kb on - strand at 629.437 kb on - strand at 629.440 kb on - strand at 629.440 kb on - strand at 629.452 kb on + strand at 629.453 kb on - strand at 629.483 kb on - strand at 629.483 kb on - strand at 629.528 kb on - strand, within EX31_RS24320 at 629.568 kb on - strand, within EX31_RS24320 at 629.695 kb on + strand, within EX31_RS24320 at 629.696 kb on - strand, within EX31_RS24320 at 629.705 kb on - strand, within EX31_RS24320 at 629.796 kb on + strand, within EX31_RS24320 at 629.829 kb on - strand, within EX31_RS24320 at 629.885 kb on + strand at 629.885 kb on + strand at 629.886 kb on - strand at 629.886 kb on - strand at 629.886 kb on - strand at 629.954 kb on + strand at 629.982 kb on + strand at 629.982 kb on + strand at 629.983 kb on - strand at 630.014 kb on + strand at 630.015 kb on - strand at 630.015 kb on - strand at 630.015 kb on - strand at 630.115 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.169 kb on - strand at 630.170 kb on + strand at 630.170 kb on + strand at 630.171 kb on - strand at 630.171 kb on - strand at 630.219 kb on - strand, within EX31_RS24325 at 630.219 kb on - strand, within EX31_RS24325 at 630.273 kb on + strand, within EX31_RS24325 at 630.274 kb on - strand, within EX31_RS24325 at 630.274 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.357 kb on - strand, within EX31_RS24325 at 630.400 kb on + strand, within EX31_RS24325 at 630.426 kb on - strand, within EX31_RS24325 at 630.601 kb on - strand, within EX31_RS24325 at 630.641 kb on - strand, within EX31_RS24325 at 630.801 kb on + strand, within EX31_RS24325 at 630.802 kb on - strand, within EX31_RS24325 at 630.802 kb on - strand, within EX31_RS24325 at 630.940 kb on + strand at 630.941 kb on - strand at 631.011 kb on + strand at 631.033 kb on - strand at 631.069 kb on - strand at 631.069 kb on - strand at 631.070 kb on + strand at 631.070 kb on + strand at 631.071 kb on - strand at 631.071 kb on - strand at 631.071 kb on - strand at 631.071 kb on - strand at 631.082 kb on - strand at 631.115 kb on + strand at 631.115 kb on + strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.116 kb on - strand at 631.128 kb on + strand at 631.128 kb on + strand at 631.128 kb on + strand at 631.128 kb on + strand at 631.129 kb on - strand at 631.129 kb on - strand at 631.129 kb on - strand at 631.129 kb on - strand at 631.129 kb on - strand at 631.164 kb on + strand at 631.164 kb on + strand at 631.164 kb on + strand at 631.164 kb on + strand at 631.164 kb on + strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.165 kb on - strand at 631.206 kb on + strand at 631.207 kb on - strand at 631.207 kb on - strand at 631.207 kb on - strand at 631.209 kb on + strand at 631.210 kb on - strand at 631.210 kb on - strand at 631.218 kb on + strand at 631.218 kb on + strand at 631.219 kb on - strand at 631.222 kb on + strand at 631.224 kb on + strand at 631.224 kb on + strand at 631.224 kb on + strand at 631.225 kb on - strand at 631.273 kb on + strand at 631.274 kb on - strand at 631.274 kb on - strand at 631.274 kb on - strand at 631.274 kb on - strand at 631.274 kb on - strand at 631.297 kb on - strand at 631.398 kb on - strand at 631.411 kb on - strand at 631.635 kb on + strand, within EX31_RS24330 at 631.635 kb on + strand, within EX31_RS24330 at 631.635 kb on + strand, within EX31_RS24330 at 631.635 kb on + strand, within EX31_RS24330 at 631.635 kb on + strand, within EX31_RS24330 at 631.636 kb on - strand, within EX31_RS24330 at 631.636 kb on - strand, within EX31_RS24330 at 631.636 kb on - strand, within EX31_RS24330 at 631.668 kb on + strand, within EX31_RS24330 at 631.668 kb on + strand, within EX31_RS24330 at 631.668 kb on + strand, within EX31_RS24330 at 631.668 kb on + strand, within EX31_RS24330 at 631.668 kb on + strand, within EX31_RS24330 at 631.669 kb on - strand, within EX31_RS24330 at 631.669 kb on - strand, within EX31_RS24330 at 631.728 kb on + strand, within EX31_RS24330 at 631.728 kb on + strand, within EX31_RS24330 at 631.729 kb on - strand, within EX31_RS24330 at 631.817 kb on - strand, within EX31_RS24330 at 631.889 kb on - strand, within EX31_RS24330 at 631.889 kb on - strand, within EX31_RS24330 at 631.912 kb on - strand, within EX31_RS24330 at 632.023 kb on + strand, within EX31_RS24330 at 632.031 kb on + strand, within EX31_RS24330 at 632.032 kb on - strand, within EX31_RS24330
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 629,131 + -0.2 629,131 + -1.2 629,131 + +0.8 629,247 + -0.4 629,247 + +1.7 629,247 + -0.9 629,248 - +0.0 629,251 + +0.2 629,251 + +0.6 629,252 - +1.2 629,252 - -0.0 629,282 + -0.8 629,286 + +0.0 629,287 - -0.2 629,317 + -0.3 629,433 + +0.8 629,437 - -0.8 629,437 - +0.8 629,440 - +0.1 629,440 - -1.4 629,452 + -1.3 629,453 - -1.4 629,483 - +2.4 629,483 - -0.8 629,528 - EX31_RS24320 0.18 +0.5 629,568 - EX31_RS24320 0.27 -0.6 629,695 + EX31_RS24320 0.56 -0.4 629,696 - EX31_RS24320 0.56 +0.9 629,705 - EX31_RS24320 0.58 +0.5 629,796 + EX31_RS24320 0.79 +0.3 629,829 - EX31_RS24320 0.87 -3.4 629,885 + -0.1 629,885 + -1.8 629,886 - +1.4 629,886 - +0.0 629,886 - -0.5 629,954 + +0.2 629,982 + +0.2 629,982 + +0.8 629,983 - -0.2 630,014 + +0.5 630,015 - -0.2 630,015 - +1.8 630,015 - +0.8 630,115 - +1.4 630,169 - -0.8 630,169 - -2.2 630,169 - +0.8 630,169 - +0.8 630,169 - +0.8 630,170 + +0.8 630,170 + -0.5 630,171 - -0.8 630,171 - -1.5 630,219 - EX31_RS24325 0.13 -1.5 630,219 - EX31_RS24325 0.13 -0.8 630,273 + EX31_RS24325 0.19 -0.2 630,274 - EX31_RS24325 0.19 -1.4 630,274 - EX31_RS24325 0.19 +0.8 630,357 - EX31_RS24325 0.28 +0.8 630,357 - EX31_RS24325 0.28 -0.6 630,357 - EX31_RS24325 0.28 -0.8 630,400 + EX31_RS24325 0.32 -2.2 630,426 - EX31_RS24325 0.35 -0.8 630,601 - EX31_RS24325 0.54 -0.2 630,641 - EX31_RS24325 0.58 -0.8 630,801 + EX31_RS24325 0.75 +0.5 630,802 - EX31_RS24325 0.75 -1.4 630,802 - EX31_RS24325 0.75 +0.8 630,940 + -0.8 630,941 - -0.2 631,011 + +0.8 631,033 - -0.8 631,069 - +0.1 631,069 - -0.8 631,070 + +0.8 631,070 + -0.2 631,071 - -0.5 631,071 - -0.8 631,071 - +1.2 631,071 - +0.9 631,082 - +0.8 631,115 + -0.8 631,115 + +0.2 631,116 - +0.6 631,116 - -0.8 631,116 - +1.2 631,116 - +1.2 631,116 - -1.5 631,116 - +1.8 631,116 - +2.4 631,128 + +1.5 631,128 + -1.2 631,128 + +0.8 631,128 + -0.8 631,129 - -0.5 631,129 - +0.2 631,129 - -0.4 631,129 - +0.5 631,129 - +0.8 631,164 + +0.2 631,164 + -0.8 631,164 + -0.8 631,164 + +0.4 631,164 + +2.8 631,165 - -0.2 631,165 - -0.4 631,165 - +2.0 631,165 - +2.0 631,165 - -0.4 631,165 - -0.0 631,165 - +1.8 631,165 - +1.8 631,206 + -0.3 631,207 - -0.8 631,207 - -1.0 631,207 - +1.8 631,209 + -0.8 631,210 - +1.2 631,210 - +0.5 631,218 + +0.0 631,218 + +0.8 631,219 - +1.2 631,222 + -0.8 631,224 + +0.8 631,224 + -1.8 631,224 + +1.5 631,225 - +0.9 631,273 + -0.5 631,274 - -0.5 631,274 - -0.7 631,274 - -2.2 631,274 - -1.2 631,274 - +0.5 631,297 - +0.1 631,398 - -0.1 631,411 - +1.4 631,635 + EX31_RS24330 0.21 -0.3 631,635 + EX31_RS24330 0.21 +1.2 631,635 + EX31_RS24330 0.21 -0.2 631,635 + EX31_RS24330 0.21 -1.5 631,635 + EX31_RS24330 0.21 -0.2 631,636 - EX31_RS24330 0.21 +0.4 631,636 - EX31_RS24330 0.21 +0.6 631,636 - EX31_RS24330 0.21 +1.8 631,668 + EX31_RS24330 0.24 +0.3 631,668 + EX31_RS24330 0.24 +0.6 631,668 + EX31_RS24330 0.24 -0.8 631,668 + EX31_RS24330 0.24 -1.2 631,668 + EX31_RS24330 0.24 +0.9 631,669 - EX31_RS24330 0.24 -0.8 631,669 - EX31_RS24330 0.24 -0.8 631,728 + EX31_RS24330 0.29 -0.9 631,728 + EX31_RS24330 0.29 -2.4 631,729 - EX31_RS24330 0.29 +1.3 631,817 - EX31_RS24330 0.37 +0.0 631,889 - EX31_RS24330 0.44 +2.1 631,889 - EX31_RS24330 0.44 -1.2 631,912 - EX31_RS24330 0.46 -0.7 632,023 + EX31_RS24330 0.56 +0.8 632,031 + EX31_RS24330 0.57 -2.2 632,032 - EX31_RS24330 0.57 -0.2
Or see this region's nucleotide sequence