Strain Fitness in Rahnella sp. WP5 around EX31_RS24140

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24135 and EX31_RS24140 are separated by 286 nucleotidesEX31_RS24140 and EX31_RS24145 are separated by 739 nucleotides EX31_RS24135: EX31_RS24135 - AraC family transcriptional regulator, at 599,420 to 600,178 _RS24135 EX31_RS24140: EX31_RS24140 - DUF2594 family protein, at 600,465 to 600,689 _RS24140 EX31_RS24145: EX31_RS24145 - UvrY/SirA/GacA family response regulator transcription factor, at 601,429 to 602,085 _RS24145 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 599.525 kb on - strand, within EX31_RS24135at 599.598 kb on - strand, within EX31_RS24135at 599.827 kb on - strand, within EX31_RS24135at 599.888 kb on + strand, within EX31_RS24135at 599.889 kb on - strand, within EX31_RS24135at 599.906 kb on + strand, within EX31_RS24135at 599.907 kb on - strand, within EX31_RS24135at 599.907 kb on - strand, within EX31_RS24135at 599.952 kb on - strand, within EX31_RS24135at 600.040 kb on + strand, within EX31_RS24135at 600.040 kb on + strand, within EX31_RS24135at 600.040 kb on + strand, within EX31_RS24135at 600.041 kb on - strand, within EX31_RS24135at 600.041 kb on - strand, within EX31_RS24135at 600.041 kb on - strand, within EX31_RS24135at 600.050 kb on + strand, within EX31_RS24135at 600.050 kb on + strand, within EX31_RS24135at 600.050 kb on + strand, within EX31_RS24135at 600.050 kb on + strand, within EX31_RS24135at 600.051 kb on - strand, within EX31_RS24135at 600.051 kb on - strand, within EX31_RS24135at 600.051 kb on - strand, within EX31_RS24135at 600.051 kb on - strand, within EX31_RS24135at 600.067 kb on + strand, within EX31_RS24135at 600.068 kb on - strand, within EX31_RS24135at 600.068 kb on - strand, within EX31_RS24135at 600.068 kb on - strand, within EX31_RS24135at 600.123 kb on + strandat 600.124 kb on - strandat 600.359 kb on + strandat 600.359 kb on + strandat 600.359 kb on + strandat 600.359 kb on + strandat 600.360 kb on - strandat 600.360 kb on - strandat 600.360 kb on - strandat 600.360 kb on - strandat 600.360 kb on - strandat 600.360 kb on - strandat 600.392 kb on - strandat 600.392 kb on - strandat 600.392 kb on - strandat 600.392 kb on - strandat 600.392 kb on - strandat 600.393 kb on + strandat 600.460 kb on + strandat 600.461 kb on - strandat 600.573 kb on - strand, within EX31_RS24140at 600.683 kb on + strandat 600.683 kb on + strandat 600.684 kb on - strandat 600.690 kb on + strandat 600.690 kb on + strandat 600.691 kb on - strandat 600.691 kb on - strandat 600.691 kb on - strandat 600.761 kb on + strandat 600.762 kb on - strandat 600.762 kb on - strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.766 kb on + strandat 600.767 kb on - strandat 600.767 kb on - strandat 600.767 kb on - strandat 600.767 kb on - strandat 600.767 kb on - strandat 600.767 kb on - strandat 600.781 kb on - strandat 600.805 kb on - strandat 600.829 kb on + strandat 600.829 kb on + strandat 600.829 kb on + strandat 600.830 kb on - strandat 600.830 kb on - strandat 600.830 kb on - strandat 600.831 kb on + strandat 600.867 kb on + strandat 600.895 kb on + strandat 600.896 kb on - strandat 600.896 kb on - strandat 600.896 kb on - strandat 600.896 kb on - strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.907 kb on + strandat 600.908 kb on - strandat 600.908 kb on - strandat 600.913 kb on + strandat 600.913 kb on + strandat 600.914 kb on - strandat 600.915 kb on + strandat 600.915 kb on + strandat 600.915 kb on + strandat 600.916 kb on - strandat 600.916 kb on - strandat 600.916 kb on - strandat 600.916 kb on - strandat 600.916 kb on - strandat 600.946 kb on - strandat 600.956 kb on + strandat 600.957 kb on - strandat 600.957 kb on - strandat 600.958 kb on + strandat 600.958 kb on + strandat 600.959 kb on - strandat 600.959 kb on - strandat 600.959 kb on - strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.963 kb on + strandat 600.964 kb on - strandat 600.964 kb on - strandat 600.964 kb on - strandat 600.964 kb on - strandat 600.964 kb on - strandat 600.967 kb on + strandat 600.967 kb on + strandat 600.967 kb on + strandat 600.967 kb on + strandat 600.967 kb on + strandat 600.967 kb on + strandat 600.968 kb on - strandat 600.968 kb on - strandat 600.968 kb on - strandat 600.968 kb on - strandat 600.968 kb on - strandat 600.968 kb on - strandat 600.969 kb on + strandat 600.969 kb on + strandat 600.969 kb on + strandat 600.969 kb on + strandat 600.969 kb on + strandat 600.970 kb on - strandat 600.970 kb on - strandat 600.970 kb on - strandat 600.992 kb on + strandat 600.993 kb on - strandat 601.047 kb on - strandat 601.051 kb on - strandat 601.098 kb on + strandat 601.112 kb on + strandat 601.124 kb on - strandat 601.126 kb on + strandat 601.138 kb on + strandat 601.163 kb on + strandat 601.164 kb on - strandat 601.206 kb on + strandat 601.206 kb on + strandat 601.207 kb on - strandat 601.220 kb on + strandat 601.225 kb on + strandat 601.225 kb on + strandat 601.229 kb on + strandat 601.283 kb on + strandat 601.283 kb on + strandat 601.283 kb on + strandat 601.290 kb on + strandat 601.301 kb on + strandat 601.301 kb on + strandat 601.301 kb on + strandat 601.302 kb on - strandat 601.323 kb on + strandat 601.323 kb on + strandat 601.323 kb on + strandat 601.323 kb on + strandat 601.323 kb on + strandat 601.323 kb on + strandat 601.324 kb on - strandat 601.324 kb on - strandat 601.325 kb on + strandat 601.325 kb on + strandat 601.325 kb on + strandat 601.326 kb on - strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.362 kb on + strandat 601.368 kb on + strandat 601.368 kb on + strandat 601.372 kb on + strandat 601.678 kb on + strand, within EX31_RS24145at 601.678 kb on + strand, within EX31_RS24145at 601.678 kb on + strand, within EX31_RS24145

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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599,525 - EX31_RS24135 0.14 -0.4
599,598 - EX31_RS24135 0.23 +0.8
599,827 - EX31_RS24135 0.54 -1.9
599,888 + EX31_RS24135 0.62 +0.8
599,889 - EX31_RS24135 0.62 +0.4
599,906 + EX31_RS24135 0.64 +0.2
599,907 - EX31_RS24135 0.64 -1.5
599,907 - EX31_RS24135 0.64 +1.1
599,952 - EX31_RS24135 0.70 +0.8
600,040 + EX31_RS24135 0.82 +1.8
600,040 + EX31_RS24135 0.82 -0.9
600,040 + EX31_RS24135 0.82 +1.8
600,041 - EX31_RS24135 0.82 -0.6
600,041 - EX31_RS24135 0.82 -0.3
600,041 - EX31_RS24135 0.82 +0.9
600,050 + EX31_RS24135 0.83 +1.5
600,050 + EX31_RS24135 0.83 +1.2
600,050 + EX31_RS24135 0.83 -0.6
600,050 + EX31_RS24135 0.83 -1.5
600,051 - EX31_RS24135 0.83 +0.4
600,051 - EX31_RS24135 0.83 -0.7
600,051 - EX31_RS24135 0.83 +0.6
600,051 - EX31_RS24135 0.83 +0.5
600,067 + EX31_RS24135 0.85 -0.2
600,068 - EX31_RS24135 0.85 +0.7
600,068 - EX31_RS24135 0.85 -0.9
600,068 - EX31_RS24135 0.85 -0.7
600,123 + +1.0
600,124 - +0.4
600,359 + -0.2
600,359 + +1.3
600,359 + +0.8
600,359 + +0.8
600,360 - -0.3
600,360 - +0.6
600,360 - +0.8
600,360 - -0.2
600,360 - +1.0
600,360 - +0.2
600,392 - -0.8
600,392 - +0.8
600,392 - -0.5
600,392 - -0.2
600,392 - +0.8
600,393 + +0.2
600,460 + -0.6
600,461 - -1.5
600,573 - EX31_RS24140 0.48 +0.7
600,683 + +0.4
600,683 + +0.1
600,684 - +0.8
600,690 + +2.6
600,690 + +0.8
600,691 - -1.4
600,691 - -0.5
600,691 - +0.0
600,761 + +0.4
600,762 - +1.4
600,762 - -1.6
600,766 + +0.8
600,766 + -1.7
600,766 + +0.5
600,766 + +1.8
600,766 + +2.4
600,766 + +1.0
600,766 + +0.1
600,766 + -0.2
600,767 - +2.6
600,767 - +0.6
600,767 - +0.8
600,767 - -1.7
600,767 - +0.8
600,767 - -0.2
600,781 - +0.6
600,805 - +2.0
600,829 + -0.2
600,829 + +0.5
600,829 + +0.8
600,830 - -0.4
600,830 - +0.8
600,830 - -0.2
600,831 + +0.5
600,867 + -0.1
600,895 + +1.5
600,896 - +3.1
600,896 - +0.8
600,896 - +1.2
600,896 - +0.8
600,907 + -0.2
600,907 + -0.3
600,907 + +0.4
600,907 + +1.4
600,907 + -0.5
600,907 + +0.4
600,907 + +0.8
600,907 + +0.4
600,908 - +0.6
600,908 - +0.5
600,913 + +0.2
600,913 + -1.3
600,914 - -0.2
600,915 + -2.5
600,915 + -2.5
600,915 + -1.2
600,916 - -2.2
600,916 - -0.8
600,916 - +0.5
600,916 - +1.8
600,916 - +0.4
600,946 - +0.1
600,956 + +0.8
600,957 - +1.8
600,957 - +0.5
600,958 + -0.2
600,958 + -0.6
600,959 - -0.2
600,959 - -0.8
600,959 - -0.2
600,963 + -1.8
600,963 + +0.5
600,963 + -0.4
600,963 + +0.4
600,963 + +1.0
600,963 + -0.5
600,963 + +0.4
600,964 - +0.2
600,964 - -0.0
600,964 - +0.0
600,964 - +0.5
600,964 - +0.7
600,967 + +1.3
600,967 + +0.0
600,967 + +0.8
600,967 + +0.1
600,967 + +0.4
600,967 + +0.2
600,968 - +0.8
600,968 - +1.1
600,968 - -1.4
600,968 - +1.3
600,968 - -1.5
600,968 - -0.6
600,969 + +3.8
600,969 + -0.2
600,969 + -0.0
600,969 + +1.2
600,969 + +0.1
600,970 - +0.1
600,970 - +0.1
600,970 - +1.0
600,992 + +0.4
600,993 - -0.2
601,047 - +0.2
601,051 - -0.5
601,098 + -2.0
601,112 + -0.2
601,124 - +1.5
601,126 + -0.5
601,138 + -0.3
601,163 + +2.0
601,164 - -0.4
601,206 + +2.8
601,206 + -1.2
601,207 - -0.8
601,220 + -0.5
601,225 + +0.4
601,225 + +0.4
601,229 + +1.8
601,283 + +0.1
601,283 + +0.2
601,283 + -0.1
601,290 + +1.4
601,301 + +0.8
601,301 + +1.2
601,301 + -0.1
601,302 - -0.4
601,323 + -0.4
601,323 + +2.0
601,323 + -1.0
601,323 + -1.2
601,323 + +0.4
601,323 + +0.8
601,324 - +0.2
601,324 - -0.2
601,325 + -0.2
601,325 + +0.6
601,325 + -0.1
601,326 - -0.2
601,362 + -0.3
601,362 + -0.5
601,362 + +0.8
601,362 + +0.9
601,362 + -0.2
601,362 + +0.8
601,362 + +0.2
601,362 + +0.1
601,362 + +0.3
601,368 + -2.0
601,368 + +2.1
601,372 + -0.8
601,678 + EX31_RS24145 0.38 -0.2
601,678 + EX31_RS24145 0.38 -0.6
601,678 + EX31_RS24145 0.38 -2.0

Or see this region's nucleotide sequence