Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23705 and EX31_RS23710 are separated by 147 nucleotides EX31_RS23710 and EX31_RS23715 are separated by 4 nucleotides
EX31_RS23705: EX31_RS23705 - malonyl-ACP O-methyltransferase BioC, at 506,073 to 506,864
_RS23705
EX31_RS23710: EX31_RS23710 - ATP-dependent dethiobiotin synthetase BioD, at 507,012 to 507,692
_RS23710
EX31_RS23715: EX31_RS23715 - ATP-binding cassette domain-containing protein, at 507,697 to 508,407
_RS23715
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.781 kb on + strand, within EX31_RS23705 at 506.782 kb on - strand, within EX31_RS23705 at 506.826 kb on + strand at 506.827 kb on - strand at 506.863 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.867 kb on - strand at 506.938 kb on - strand at 506.938 kb on - strand at 506.941 kb on - strand at 506.998 kb on + strand at 507.006 kb on + strand at 507.007 kb on - strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.025 kb on - strand at 507.025 kb on - strand at 507.030 kb on - strand at 507.030 kb on - strand at 507.056 kb on + strand at 507.057 kb on - strand at 507.057 kb on - strand at 507.057 kb on - strand at 507.120 kb on + strand, within EX31_RS23710 at 507.187 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.195 kb on + strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.196 kb on - strand, within EX31_RS23710 at 507.263 kb on + strand, within EX31_RS23710 at 507.263 kb on + strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.264 kb on - strand, within EX31_RS23710 at 507.308 kb on - strand, within EX31_RS23710 at 507.319 kb on + strand, within EX31_RS23710 at 507.320 kb on - strand, within EX31_RS23710 at 507.320 kb on - strand, within EX31_RS23710 at 507.375 kb on + strand, within EX31_RS23710 at 507.375 kb on + strand, within EX31_RS23710 at 507.376 kb on - strand, within EX31_RS23710 at 507.376 kb on - strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.396 kb on + strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.397 kb on - strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.398 kb on + strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.399 kb on - strand, within EX31_RS23710 at 507.532 kb on + strand, within EX31_RS23710 at 507.537 kb on - strand, within EX31_RS23710 at 507.537 kb on - strand, within EX31_RS23710 at 507.544 kb on + strand, within EX31_RS23710 at 507.545 kb on - strand, within EX31_RS23710 at 507.545 kb on - strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.573 kb on + strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.574 kb on - strand, within EX31_RS23710 at 507.582 kb on - strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.593 kb on + strand, within EX31_RS23710 at 507.594 kb on - strand, within EX31_RS23710 at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.663 kb on + strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.664 kb on - strand at 507.674 kb on + strand at 507.675 kb on - strand at 507.710 kb on + strand at 507.711 kb on - strand at 507.721 kb on + strand at 507.721 kb on + strand at 507.722 kb on - strand at 507.727 kb on - strand at 507.819 kb on + strand, within EX31_RS23715 at 507.820 kb on - strand, within EX31_RS23715 at 507.820 kb on - strand, within EX31_RS23715 at 507.873 kb on + strand, within EX31_RS23715 at 507.873 kb on + strand, within EX31_RS23715 at 507.935 kb on - strand, within EX31_RS23715 at 507.935 kb on - strand, within EX31_RS23715 at 507.935 kb on - strand, within EX31_RS23715 at 508.046 kb on + strand, within EX31_RS23715 at 508.046 kb on + strand, within EX31_RS23715 at 508.046 kb on + strand, within EX31_RS23715 at 508.046 kb on + strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.047 kb on - strand, within EX31_RS23715 at 508.074 kb on + strand, within EX31_RS23715 at 508.075 kb on - strand, within EX31_RS23715 at 508.075 kb on - strand, within EX31_RS23715 at 508.155 kb on - strand, within EX31_RS23715 at 508.155 kb on - strand, within EX31_RS23715 at 508.320 kb on + strand, within EX31_RS23715 at 508.320 kb on + strand, within EX31_RS23715 at 508.320 kb on + strand, within EX31_RS23715 at 508.321 kb on - strand, within EX31_RS23715 at 508.321 kb on - strand, within EX31_RS23715 at 508.321 kb on - strand, within EX31_RS23715 at 508.321 kb on - strand, within EX31_RS23715 at 508.321 kb on - strand, within EX31_RS23715 at 508.362 kb on + strand at 508.377 kb on - strand at 508.380 kb on - strand at 508.380 kb on - strand at 508.380 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.403 kb on - strand at 508.466 kb on - strand at 508.478 kb on + strand at 508.478 kb on + strand at 508.478 kb on + strand at 508.478 kb on + strand at 508.478 kb on + strand at 508.478 kb on + strand at 508.479 kb on - strand at 508.479 kb on - strand at 508.479 kb on - strand at 508.479 kb on - strand at 508.479 kb on - strand at 508.479 kb on - strand at 508.491 kb on + strand at 508.492 kb on - strand at 508.511 kb on + strand at 508.512 kb on - strand at 508.550 kb on - strand at 508.555 kb on + strand at 508.555 kb on + strand at 508.556 kb on - strand at 508.556 kb on - strand at 508.556 kb on - strand at 508.556 kb on - strand at 508.556 kb on - strand at 508.576 kb on + strand at 508.576 kb on + strand at 508.577 kb on - strand at 508.577 kb on - strand at 508.794 kb on + strand at 508.795 kb on - strand at 508.825 kb on + strand at 508.839 kb on + strand at 508.980 kb on - strand at 508.985 kb on + strand at 508.985 kb on + strand at 508.985 kb on + strand at 508.985 kb on + strand at 508.986 kb on - strand at 508.986 kb on - strand at 508.986 kb on - strand at 508.989 kb on + strand at 508.990 kb on - strand at 509.174 kb on + strand at 509.247 kb on + strand at 509.247 kb on + strand at 509.262 kb on - strand at 509.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 506,781 + EX31_RS23705 0.89 -0.3 506,781 + EX31_RS23705 0.89 +0.8 506,781 + EX31_RS23705 0.89 -0.4 506,781 + EX31_RS23705 0.89 -1.4 506,782 - EX31_RS23705 0.90 +0.6 506,826 + +0.1 506,827 - +1.6 506,863 - -0.8 506,867 - -1.5 506,867 - -0.8 506,867 - +0.2 506,867 - -0.8 506,867 - +1.7 506,867 - +0.8 506,938 - +0.4 506,938 - -0.9 506,941 - +0.6 506,998 + +1.8 507,006 + -0.2 507,007 - +0.2 507,024 + -2.0 507,024 + +0.6 507,024 + +0.6 507,024 + +1.5 507,025 - -0.3 507,025 - -0.9 507,030 - -0.1 507,030 - -0.3 507,056 + +0.5 507,057 - -0.2 507,057 - +0.3 507,057 - -0.2 507,120 + EX31_RS23710 0.16 +0.5 507,187 + EX31_RS23710 0.26 -1.0 507,195 + EX31_RS23710 0.27 +0.1 507,195 + EX31_RS23710 0.27 +0.2 507,195 + EX31_RS23710 0.27 +0.8 507,196 - EX31_RS23710 0.27 +0.5 507,196 - EX31_RS23710 0.27 +0.8 507,196 - EX31_RS23710 0.27 +1.0 507,263 + EX31_RS23710 0.37 -0.8 507,263 + EX31_RS23710 0.37 +1.7 507,264 - EX31_RS23710 0.37 +0.5 507,264 - EX31_RS23710 0.37 -0.4 507,264 - EX31_RS23710 0.37 +0.5 507,264 - EX31_RS23710 0.37 -2.0 507,264 - EX31_RS23710 0.37 +0.5 507,308 - EX31_RS23710 0.43 -2.2 507,319 + EX31_RS23710 0.45 +2.4 507,320 - EX31_RS23710 0.45 +0.8 507,320 - EX31_RS23710 0.45 +0.8 507,375 + EX31_RS23710 0.53 -0.8 507,375 + EX31_RS23710 0.53 +1.0 507,376 - EX31_RS23710 0.53 +0.1 507,376 - EX31_RS23710 0.53 +1.8 507,396 + EX31_RS23710 0.56 -1.3 507,396 + EX31_RS23710 0.56 +1.1 507,396 + EX31_RS23710 0.56 +1.3 507,396 + EX31_RS23710 0.56 -0.3 507,396 + EX31_RS23710 0.56 +0.2 507,396 + EX31_RS23710 0.56 +0.0 507,396 + EX31_RS23710 0.56 +0.8 507,396 + EX31_RS23710 0.56 -0.3 507,396 + EX31_RS23710 0.56 -0.6 507,397 - EX31_RS23710 0.57 +1.8 507,397 - EX31_RS23710 0.57 +1.4 507,397 - EX31_RS23710 0.57 -0.5 507,398 + EX31_RS23710 0.57 +2.1 507,398 + EX31_RS23710 0.57 +1.3 507,398 + EX31_RS23710 0.57 +0.5 507,398 + EX31_RS23710 0.57 -0.8 507,398 + EX31_RS23710 0.57 +0.6 507,398 + EX31_RS23710 0.57 -0.7 507,398 + EX31_RS23710 0.57 +0.1 507,398 + EX31_RS23710 0.57 -0.2 507,399 - EX31_RS23710 0.57 -0.3 507,399 - EX31_RS23710 0.57 -0.1 507,399 - EX31_RS23710 0.57 +2.3 507,532 + EX31_RS23710 0.76 +0.2 507,537 - EX31_RS23710 0.77 +1.4 507,537 - EX31_RS23710 0.77 +2.8 507,544 + EX31_RS23710 0.78 +0.7 507,545 - EX31_RS23710 0.78 -2.6 507,545 - EX31_RS23710 0.78 -0.6 507,573 + EX31_RS23710 0.82 -0.8 507,573 + EX31_RS23710 0.82 -0.9 507,573 + EX31_RS23710 0.82 -0.4 507,573 + EX31_RS23710 0.82 +1.0 507,573 + EX31_RS23710 0.82 -0.2 507,573 + EX31_RS23710 0.82 +0.0 507,573 + EX31_RS23710 0.82 +0.6 507,573 + EX31_RS23710 0.82 -0.2 507,573 + EX31_RS23710 0.82 +0.3 507,573 + EX31_RS23710 0.82 +0.7 507,574 - EX31_RS23710 0.83 +1.8 507,574 - EX31_RS23710 0.83 +1.2 507,574 - EX31_RS23710 0.83 -0.2 507,574 - EX31_RS23710 0.83 +1.4 507,574 - EX31_RS23710 0.83 -1.0 507,574 - EX31_RS23710 0.83 +0.0 507,574 - EX31_RS23710 0.83 +0.7 507,574 - EX31_RS23710 0.83 +0.2 507,574 - EX31_RS23710 0.83 +0.0 507,574 - EX31_RS23710 0.83 -0.6 507,574 - EX31_RS23710 0.83 +0.1 507,574 - EX31_RS23710 0.83 -0.3 507,574 - EX31_RS23710 0.83 +0.8 507,574 - EX31_RS23710 0.83 +0.5 507,574 - EX31_RS23710 0.83 -0.2 507,574 - EX31_RS23710 0.83 -2.0 507,574 - EX31_RS23710 0.83 +0.7 507,574 - EX31_RS23710 0.83 +2.4 507,574 - EX31_RS23710 0.83 -0.1 507,574 - EX31_RS23710 0.83 +0.0 507,574 - EX31_RS23710 0.83 +0.8 507,582 - EX31_RS23710 0.84 +0.8 507,593 + EX31_RS23710 0.85 +1.1 507,593 + EX31_RS23710 0.85 +0.8 507,593 + EX31_RS23710 0.85 +1.0 507,594 - EX31_RS23710 0.85 -1.2 507,663 + +1.8 507,663 + +1.0 507,663 + -0.3 507,663 + +0.8 507,663 + -1.0 507,663 + +0.4 507,663 + -0.9 507,664 - +1.5 507,664 - +2.1 507,664 - -0.9 507,664 - -0.2 507,664 - +1.8 507,664 - -0.4 507,674 + +0.1 507,675 - -0.8 507,710 + +0.5 507,711 - +0.8 507,721 + +0.8 507,721 + +2.7 507,722 - -1.5 507,727 - -0.0 507,819 + EX31_RS23715 0.17 +1.5 507,820 - EX31_RS23715 0.17 +0.1 507,820 - EX31_RS23715 0.17 +0.1 507,873 + EX31_RS23715 0.25 -1.2 507,873 + EX31_RS23715 0.25 +0.8 507,935 - EX31_RS23715 0.33 +1.4 507,935 - EX31_RS23715 0.33 +2.7 507,935 - EX31_RS23715 0.33 -1.8 508,046 + EX31_RS23715 0.49 +1.4 508,046 + EX31_RS23715 0.49 +0.8 508,046 + EX31_RS23715 0.49 -1.5 508,046 + EX31_RS23715 0.49 -0.2 508,047 - EX31_RS23715 0.49 +0.0 508,047 - EX31_RS23715 0.49 -1.1 508,047 - EX31_RS23715 0.49 +3.6 508,047 - EX31_RS23715 0.49 +0.3 508,047 - EX31_RS23715 0.49 +1.9 508,047 - EX31_RS23715 0.49 +0.8 508,074 + EX31_RS23715 0.53 +0.2 508,075 - EX31_RS23715 0.53 +0.1 508,075 - EX31_RS23715 0.53 +0.0 508,155 - EX31_RS23715 0.64 +0.7 508,155 - EX31_RS23715 0.64 +2.0 508,320 + EX31_RS23715 0.88 +1.5 508,320 + EX31_RS23715 0.88 +0.2 508,320 + EX31_RS23715 0.88 +0.8 508,321 - EX31_RS23715 0.88 -0.3 508,321 - EX31_RS23715 0.88 -0.6 508,321 - EX31_RS23715 0.88 +0.5 508,321 - EX31_RS23715 0.88 +0.8 508,321 - EX31_RS23715 0.88 +1.3 508,362 + -2.0 508,377 - +0.1 508,380 - -0.4 508,380 - +0.8 508,380 - +0.8 508,403 - +0.1 508,403 - -0.2 508,403 - -1.6 508,403 - +0.8 508,403 - -1.8 508,403 - -0.3 508,403 - -1.8 508,403 - +0.5 508,466 - -0.5 508,478 + +1.5 508,478 + +0.4 508,478 + -1.5 508,478 + -0.2 508,478 + +0.1 508,478 + -0.6 508,479 - -1.1 508,479 - +0.8 508,479 - +0.5 508,479 - +0.1 508,479 - -2.2 508,479 - -1.2 508,491 + -0.5 508,492 - -0.0 508,511 + +0.5 508,512 - +1.0 508,550 - +0.0 508,555 + +0.8 508,555 + +0.8 508,556 - -0.9 508,556 - +1.1 508,556 - +0.0 508,556 - +2.5 508,556 - -0.4 508,576 + -0.2 508,576 + +2.8 508,577 - -0.7 508,577 - +0.5 508,794 + +0.2 508,795 - -0.7 508,825 + +0.5 508,839 + +1.6 508,980 - +0.5 508,985 + -0.1 508,985 + +0.3 508,985 + -0.5 508,985 + +0.5 508,986 - +0.1 508,986 - +0.2 508,986 - -0.5 508,989 + +1.5 508,990 - +0.3 509,174 + +0.8 509,247 + +0.4 509,247 + +0.8 509,262 - +0.8 509,317 - +0.8
Or see this region's nucleotide sequence