Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23670 and EX31_RS23675 are separated by 160 nucleotides EX31_RS23675 and EX31_RS23680 are separated by 41 nucleotides
EX31_RS23670: EX31_RS23670 - acid phosphatase AphA, at 498,532 to 499,245
_RS23670
EX31_RS23675: EX31_RS23675 - ABC transporter substrate-binding protein, at 499,406 to 500,185
_RS23675
EX31_RS23680: EX31_RS23680 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 500,227 to 501,381
_RS23680
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 498.413 kb on + strand at 498.414 kb on - strand at 498.459 kb on + strand at 498.469 kb on - strand at 498.496 kb on - strand at 498.507 kb on + strand at 498.508 kb on - strand at 498.510 kb on + strand at 498.517 kb on - strand at 498.517 kb on - strand at 498.517 kb on - strand at 498.530 kb on + strand at 498.530 kb on + strand at 498.530 kb on + strand at 498.537 kb on + strand at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.609 kb on + strand, within EX31_RS23670 at 498.610 kb on - strand, within EX31_RS23670 at 498.722 kb on + strand, within EX31_RS23670 at 498.722 kb on + strand, within EX31_RS23670 at 498.723 kb on - strand, within EX31_RS23670 at 498.723 kb on - strand, within EX31_RS23670 at 498.723 kb on - strand, within EX31_RS23670 at 498.814 kb on + strand, within EX31_RS23670 at 498.815 kb on - strand, within EX31_RS23670 at 498.931 kb on + strand, within EX31_RS23670 at 498.932 kb on - strand, within EX31_RS23670 at 498.932 kb on - strand, within EX31_RS23670 at 499.119 kb on + strand, within EX31_RS23670 at 499.119 kb on + strand, within EX31_RS23670 at 499.119 kb on + strand, within EX31_RS23670 at 499.120 kb on - strand, within EX31_RS23670 at 499.120 kb on - strand, within EX31_RS23670 at 499.120 kb on - strand, within EX31_RS23670 at 499.120 kb on - strand, within EX31_RS23670 at 499.120 kb on - strand, within EX31_RS23670 at 499.161 kb on - strand, within EX31_RS23670 at 499.173 kb on + strand, within EX31_RS23670 at 499.183 kb on + strand at 499.183 kb on + strand at 499.183 kb on + strand at 499.183 kb on + strand at 499.241 kb on - strand at 499.241 kb on - strand at 499.243 kb on + strand at 499.243 kb on + strand at 499.243 kb on + strand at 499.243 kb on + strand at 499.243 kb on + strand at 499.329 kb on + strand at 499.363 kb on - strand at 499.408 kb on - strand at 499.408 kb on - strand at 499.408 kb on - strand at 499.426 kb on + strand at 499.427 kb on - strand at 499.427 kb on - strand at 499.437 kb on + strand at 499.437 kb on + strand at 499.438 kb on - strand at 499.480 kb on + strand at 499.493 kb on - strand, within EX31_RS23675 at 499.516 kb on + strand, within EX31_RS23675 at 499.571 kb on + strand, within EX31_RS23675 at 499.594 kb on - strand, within EX31_RS23675 at 499.650 kb on - strand, within EX31_RS23675 at 499.650 kb on - strand, within EX31_RS23675 at 499.686 kb on + strand, within EX31_RS23675 at 499.686 kb on + strand, within EX31_RS23675 at 499.687 kb on - strand, within EX31_RS23675 at 499.708 kb on - strand, within EX31_RS23675 at 499.718 kb on - strand, within EX31_RS23675 at 499.718 kb on - strand, within EX31_RS23675 at 499.721 kb on + strand, within EX31_RS23675 at 499.722 kb on - strand, within EX31_RS23675 at 499.722 kb on - strand, within EX31_RS23675 at 499.752 kb on + strand, within EX31_RS23675 at 499.753 kb on - strand, within EX31_RS23675 at 499.775 kb on + strand, within EX31_RS23675 at 499.775 kb on + strand, within EX31_RS23675 at 499.776 kb on - strand, within EX31_RS23675 at 499.776 kb on - strand, within EX31_RS23675 at 499.786 kb on + strand, within EX31_RS23675 at 499.787 kb on - strand, within EX31_RS23675 at 499.787 kb on - strand, within EX31_RS23675 at 499.900 kb on + strand, within EX31_RS23675 at 499.924 kb on + strand, within EX31_RS23675 at 499.925 kb on - strand, within EX31_RS23675 at 499.925 kb on - strand, within EX31_RS23675 at 499.925 kb on - strand, within EX31_RS23675 at 499.940 kb on - strand, within EX31_RS23675 at 500.036 kb on - strand, within EX31_RS23675 at 500.218 kb on + strand at 500.218 kb on + strand at 500.218 kb on + strand at 500.218 kb on + strand at 500.218 kb on + strand at 500.219 kb on - strand at 500.219 kb on - strand at 500.219 kb on - strand at 500.219 kb on - strand at 500.258 kb on + strand at 500.258 kb on + strand at 500.259 kb on - strand at 500.259 kb on - strand at 500.259 kb on - strand at 500.313 kb on + strand at 500.314 kb on - strand at 500.321 kb on + strand at 500.322 kb on - strand at 500.410 kb on - strand, within EX31_RS23680 at 500.449 kb on + strand, within EX31_RS23680 at 500.449 kb on + strand, within EX31_RS23680 at 500.450 kb on - strand, within EX31_RS23680 at 500.526 kb on - strand, within EX31_RS23680 at 500.645 kb on + strand, within EX31_RS23680 at 500.645 kb on + strand, within EX31_RS23680 at 500.646 kb on - strand, within EX31_RS23680 at 500.672 kb on + strand, within EX31_RS23680 at 500.673 kb on - strand, within EX31_RS23680 at 500.771 kb on + strand, within EX31_RS23680 at 500.771 kb on + strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.772 kb on - strand, within EX31_RS23680 at 500.965 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.002 kb on + strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.003 kb on - strand, within EX31_RS23680 at 501.027 kb on - strand, within EX31_RS23680 at 501.049 kb on + strand, within EX31_RS23680 at 501.050 kb on - strand, within EX31_RS23680 at 501.050 kb on - strand, within EX31_RS23680 at 501.050 kb on - strand, within EX31_RS23680 at 501.071 kb on + strand, within EX31_RS23680 at 501.071 kb on + strand, within EX31_RS23680 at 501.122 kb on + strand, within EX31_RS23680 at 501.122 kb on + strand, within EX31_RS23680 at 501.122 kb on + strand, within EX31_RS23680 at 501.122 kb on + strand, within EX31_RS23680 at 501.123 kb on - strand, within EX31_RS23680 at 501.123 kb on - strand, within EX31_RS23680 at 501.134 kb on + strand, within EX31_RS23680 at 501.169 kb on + strand, within EX31_RS23680
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 498,413 + +0.6 498,414 - +0.6 498,459 + +0.4 498,469 - +1.0 498,496 - -0.8 498,507 + +0.1 498,508 - +0.8 498,510 + -0.1 498,517 - +1.2 498,517 - -1.5 498,517 - +0.6 498,530 + -1.0 498,530 + -0.7 498,530 + +1.2 498,537 + +0.3 498,609 + EX31_RS23670 0.11 -1.2 498,609 + EX31_RS23670 0.11 -0.5 498,609 + EX31_RS23670 0.11 -0.5 498,609 + EX31_RS23670 0.11 +0.4 498,609 + EX31_RS23670 0.11 -0.5 498,609 + EX31_RS23670 0.11 +1.8 498,609 + EX31_RS23670 0.11 -0.4 498,609 + EX31_RS23670 0.11 -0.5 498,610 - EX31_RS23670 0.11 -0.8 498,722 + EX31_RS23670 0.27 -0.5 498,722 + EX31_RS23670 0.27 +0.0 498,723 - EX31_RS23670 0.27 +2.0 498,723 - EX31_RS23670 0.27 +0.8 498,723 - EX31_RS23670 0.27 -0.8 498,814 + EX31_RS23670 0.39 -1.5 498,815 - EX31_RS23670 0.40 +1.1 498,931 + EX31_RS23670 0.56 +0.5 498,932 - EX31_RS23670 0.56 +1.6 498,932 - EX31_RS23670 0.56 +0.8 499,119 + EX31_RS23670 0.82 +0.0 499,119 + EX31_RS23670 0.82 -0.5 499,119 + EX31_RS23670 0.82 -0.2 499,120 - EX31_RS23670 0.82 -0.9 499,120 - EX31_RS23670 0.82 +2.4 499,120 - EX31_RS23670 0.82 +0.2 499,120 - EX31_RS23670 0.82 -0.4 499,120 - EX31_RS23670 0.82 +0.2 499,161 - EX31_RS23670 0.88 -1.2 499,173 + EX31_RS23670 0.90 +0.4 499,183 + +0.6 499,183 + +0.6 499,183 + +1.1 499,183 + +0.5 499,241 - +0.6 499,241 - +2.0 499,243 + -0.2 499,243 + -0.3 499,243 + -0.1 499,243 + -1.5 499,243 + -0.1 499,329 + -2.4 499,363 - +0.2 499,408 - +0.8 499,408 - -0.2 499,408 - -2.4 499,426 + -0.1 499,427 - -0.8 499,427 - +1.5 499,437 + +1.8 499,437 + +1.2 499,438 - -0.6 499,480 + -0.8 499,493 - EX31_RS23675 0.11 +0.2 499,516 + EX31_RS23675 0.14 -0.2 499,571 + EX31_RS23675 0.21 +0.8 499,594 - EX31_RS23675 0.24 +0.5 499,650 - EX31_RS23675 0.31 -0.8 499,650 - EX31_RS23675 0.31 +1.6 499,686 + EX31_RS23675 0.36 +0.8 499,686 + EX31_RS23675 0.36 -0.8 499,687 - EX31_RS23675 0.36 +1.3 499,708 - EX31_RS23675 0.39 -0.2 499,718 - EX31_RS23675 0.40 +0.8 499,718 - EX31_RS23675 0.40 +1.3 499,721 + EX31_RS23675 0.40 +0.8 499,722 - EX31_RS23675 0.41 +0.0 499,722 - EX31_RS23675 0.41 -1.5 499,752 + EX31_RS23675 0.44 -0.8 499,753 - EX31_RS23675 0.44 +1.5 499,775 + EX31_RS23675 0.47 +0.4 499,775 + EX31_RS23675 0.47 +1.1 499,776 - EX31_RS23675 0.47 -1.3 499,776 - EX31_RS23675 0.47 +0.0 499,786 + EX31_RS23675 0.49 +2.0 499,787 - EX31_RS23675 0.49 +0.8 499,787 - EX31_RS23675 0.49 +1.3 499,900 + EX31_RS23675 0.63 -0.8 499,924 + EX31_RS23675 0.66 +0.1 499,925 - EX31_RS23675 0.67 +1.8 499,925 - EX31_RS23675 0.67 +1.8 499,925 - EX31_RS23675 0.67 +0.8 499,940 - EX31_RS23675 0.68 +1.1 500,036 - EX31_RS23675 0.81 +1.3 500,218 + +0.0 500,218 + -0.6 500,218 + -0.4 500,218 + +2.6 500,218 + +1.3 500,219 - +0.6 500,219 - -2.8 500,219 - -0.2 500,219 - -0.1 500,258 + +2.3 500,258 + +1.2 500,259 - +0.9 500,259 - +0.8 500,259 - +0.1 500,313 + -0.2 500,314 - +0.1 500,321 + +0.2 500,322 - +0.5 500,410 - EX31_RS23680 0.16 +0.6 500,449 + EX31_RS23680 0.19 -0.5 500,449 + EX31_RS23680 0.19 +2.4 500,450 - EX31_RS23680 0.19 +1.2 500,526 - EX31_RS23680 0.26 +1.4 500,645 + EX31_RS23680 0.36 +0.8 500,645 + EX31_RS23680 0.36 -0.2 500,646 - EX31_RS23680 0.36 -0.6 500,672 + EX31_RS23680 0.39 +0.0 500,673 - EX31_RS23680 0.39 -0.2 500,771 + EX31_RS23680 0.47 +4.0 500,771 + EX31_RS23680 0.47 +0.5 500,772 - EX31_RS23680 0.47 -0.2 500,772 - EX31_RS23680 0.47 -0.2 500,772 - EX31_RS23680 0.47 -0.8 500,772 - EX31_RS23680 0.47 -0.4 500,772 - EX31_RS23680 0.47 +1.3 500,772 - EX31_RS23680 0.47 +1.4 500,965 + EX31_RS23680 0.64 -0.7 501,002 + EX31_RS23680 0.67 +0.2 501,002 + EX31_RS23680 0.67 -0.2 501,002 + EX31_RS23680 0.67 +0.8 501,002 + EX31_RS23680 0.67 -2.8 501,002 + EX31_RS23680 0.67 +2.0 501,002 + EX31_RS23680 0.67 -0.5 501,002 + EX31_RS23680 0.67 +0.8 501,002 + EX31_RS23680 0.67 -0.6 501,002 + EX31_RS23680 0.67 +0.4 501,003 - EX31_RS23680 0.67 -0.5 501,003 - EX31_RS23680 0.67 -0.2 501,003 - EX31_RS23680 0.67 -3.0 501,003 - EX31_RS23680 0.67 -1.3 501,003 - EX31_RS23680 0.67 +0.8 501,003 - EX31_RS23680 0.67 +1.6 501,003 - EX31_RS23680 0.67 +2.3 501,003 - EX31_RS23680 0.67 -1.2 501,027 - EX31_RS23680 0.69 -0.8 501,049 + EX31_RS23680 0.71 +1.6 501,050 - EX31_RS23680 0.71 +0.4 501,050 - EX31_RS23680 0.71 +0.9 501,050 - EX31_RS23680 0.71 +0.4 501,071 + EX31_RS23680 0.73 +0.6 501,071 + EX31_RS23680 0.73 -0.4 501,122 + EX31_RS23680 0.77 -0.5 501,122 + EX31_RS23680 0.77 +0.3 501,122 + EX31_RS23680 0.77 -1.9 501,122 + EX31_RS23680 0.77 -0.6 501,123 - EX31_RS23680 0.78 -0.2 501,123 - EX31_RS23680 0.78 -0.1 501,134 + EX31_RS23680 0.79 +0.4 501,169 + EX31_RS23680 0.82 +1.1
Or see this region's nucleotide sequence