Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23545 and EX31_RS23550 are separated by 66 nucleotides EX31_RS23550 and EX31_RS23555 are separated by 85 nucleotides EX31_RS23555 and EX31_RS23560 are separated by 207 nucleotides EX31_RS23560 and EX31_RS23565 are separated by 151 nucleotides
EX31_RS23545: EX31_RS23545 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 474,897 to 475,949
_RS23545
EX31_RS23550: EX31_RS23550 - GNAT family N-acetyltransferase, at 476,016 to 476,489
_RS23550
EX31_RS23555: EX31_RS23555 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 476,575 to 477,327
_RS23555
EX31_RS23560: EX31_RS23560 - phosphate starvation-inducible protein, at 477,535 to 477,867
_RS23560
EX31_RS23565: EX31_RS23565 - galactose-1-epimerase, at 478,019 to 479,065
_RS23565
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 475.575 kb on - strand, within EX31_RS23545 at 475.586 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.618 kb on - strand, within EX31_RS23545 at 475.683 kb on - strand, within EX31_RS23545 at 475.683 kb on - strand, within EX31_RS23545 at 475.712 kb on + strand, within EX31_RS23545 at 475.712 kb on + strand, within EX31_RS23545 at 475.713 kb on - strand, within EX31_RS23545 at 475.855 kb on - strand at 475.966 kb on + strand at 475.966 kb on + strand at 475.966 kb on + strand at 476.018 kb on - strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.074 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.148 kb on - strand, within EX31_RS23550 at 476.148 kb on - strand, within EX31_RS23550 at 476.339 kb on + strand, within EX31_RS23550 at 476.397 kb on - strand, within EX31_RS23550 at 476.401 kb on + strand, within EX31_RS23550 at 476.402 kb on - strand, within EX31_RS23550 at 476.502 kb on - strand at 476.502 kb on - strand at 476.512 kb on - strand at 476.544 kb on - strand at 476.544 kb on - strand at 476.557 kb on - strand at 476.557 kb on - strand at 476.557 kb on - strand at 476.643 kb on - strand at 477.363 kb on - strand at 477.444 kb on - strand at 477.446 kb on + strand at 477.452 kb on + strand at 477.475 kb on - strand at 477.475 kb on - strand at 477.516 kb on + strand at 477.517 kb on - strand at 477.517 kb on - strand at 477.558 kb on + strand at 477.559 kb on - strand at 477.615 kb on + strand, within EX31_RS23560 at 477.652 kb on - strand, within EX31_RS23560 at 477.726 kb on + strand, within EX31_RS23560 at 477.727 kb on - strand, within EX31_RS23560 at 477.741 kb on + strand, within EX31_RS23560 at 477.741 kb on + strand, within EX31_RS23560 at 477.742 kb on - strand, within EX31_RS23560 at 477.742 kb on - strand, within EX31_RS23560 at 477.847 kb on + strand at 477.860 kb on - strand at 477.867 kb on + strand at 477.868 kb on - strand at 477.883 kb on + strand at 477.883 kb on + strand at 477.895 kb on + strand at 477.896 kb on - strand at 477.917 kb on + strand at 477.918 kb on - strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.926 kb on - strand at 477.926 kb on - strand at 478.020 kb on + strand at 478.020 kb on + strand at 478.020 kb on + strand at 478.021 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.152 kb on + strand, within EX31_RS23565 at 478.153 kb on - strand, within EX31_RS23565 at 478.161 kb on + strand, within EX31_RS23565 at 478.162 kb on - strand, within EX31_RS23565 at 478.209 kb on + strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.234 kb on + strand, within EX31_RS23565 at 478.235 kb on - strand, within EX31_RS23565 at 478.235 kb on - strand, within EX31_RS23565 at 478.320 kb on + strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 475,575 - EX31_RS23545 0.64 -1.5 475,586 + EX31_RS23545 0.65 -0.2 475,617 + EX31_RS23545 0.68 +0.8 475,617 + EX31_RS23545 0.68 -2.6 475,617 + EX31_RS23545 0.68 +0.0 475,618 - EX31_RS23545 0.68 +1.8 475,683 - EX31_RS23545 0.75 +1.3 475,683 - EX31_RS23545 0.75 -0.2 475,712 + EX31_RS23545 0.77 -1.0 475,712 + EX31_RS23545 0.77 +0.8 475,713 - EX31_RS23545 0.77 +0.8 475,855 - +0.1 475,966 + +0.8 475,966 + +1.6 475,966 + +0.2 476,018 - -0.2 476,039 + -0.5 476,039 + -0.8 476,039 + +1.6 476,039 + -0.2 476,039 + +0.6 476,039 + +1.4 476,040 - +2.6 476,040 - -1.2 476,040 - +2.1 476,040 - +0.8 476,040 - +0.4 476,040 - +0.8 476,040 - +0.1 476,040 - +0.8 476,040 - +1.2 476,074 + EX31_RS23550 0.12 -0.6 476,147 + EX31_RS23550 0.28 -0.1 476,147 + EX31_RS23550 0.28 -0.2 476,147 + EX31_RS23550 0.28 +0.2 476,147 + EX31_RS23550 0.28 +0.4 476,147 + EX31_RS23550 0.28 -0.8 476,147 + EX31_RS23550 0.28 -2.2 476,148 - EX31_RS23550 0.28 +1.2 476,148 - EX31_RS23550 0.28 +0.0 476,339 + EX31_RS23550 0.68 +0.8 476,397 - EX31_RS23550 0.80 +1.4 476,401 + EX31_RS23550 0.81 -0.2 476,402 - EX31_RS23550 0.81 +0.8 476,502 - +0.8 476,502 - -0.6 476,512 - -1.2 476,544 - +1.2 476,544 - +1.7 476,557 - +0.5 476,557 - -0.2 476,557 - +0.8 476,643 - +0.8 477,363 - +0.8 477,444 - +0.5 477,446 + -0.0 477,452 + +0.5 477,475 - +0.6 477,475 - +1.1 477,516 + -2.0 477,517 - -1.5 477,517 - +0.4 477,558 + +1.8 477,559 - -0.3 477,615 + EX31_RS23560 0.24 +0.2 477,652 - EX31_RS23560 0.35 +0.0 477,726 + EX31_RS23560 0.57 +0.0 477,727 - EX31_RS23560 0.58 -1.2 477,741 + EX31_RS23560 0.62 -1.0 477,741 + EX31_RS23560 0.62 +0.1 477,742 - EX31_RS23560 0.62 +0.4 477,742 - EX31_RS23560 0.62 -0.2 477,847 + -0.5 477,860 - -1.2 477,867 + -0.5 477,868 - -0.9 477,883 + -0.2 477,883 + -0.8 477,895 + -1.1 477,896 - -1.5 477,917 + -0.4 477,918 - -0.1 477,925 + +0.1 477,925 + +0.5 477,925 + +0.1 477,925 + +0.4 477,926 - -1.6 477,926 - +0.3 478,020 + +0.2 478,020 + +0.5 478,020 + +1.8 478,021 - +0.6 478,039 - -0.4 478,039 - -0.2 478,039 - -2.0 478,039 - +0.1 478,054 + -1.2 478,054 + -0.5 478,054 + +0.1 478,054 + +0.8 478,054 + -0.5 478,054 + -0.3 478,054 + +0.4 478,054 + +0.8 478,054 + +0.8 478,054 + +0.3 478,054 + +0.6 478,054 + +1.4 478,054 + +1.8 478,054 + +1.0 478,055 - -0.4 478,055 - -0.2 478,055 - +0.1 478,055 - +0.5 478,055 - +2.4 478,055 - -0.3 478,055 - -1.6 478,055 - +0.5 478,055 - +1.4 478,056 + +0.3 478,056 + +1.6 478,056 + +1.4 478,056 + +0.5 478,056 + -2.3 478,057 - +0.3 478,057 - -0.8 478,057 - -0.4 478,057 - +0.3 478,152 + EX31_RS23565 0.13 +1.8 478,153 - EX31_RS23565 0.13 +1.8 478,161 + EX31_RS23565 0.14 +1.8 478,162 - EX31_RS23565 0.14 -2.2 478,209 + EX31_RS23565 0.18 +0.8 478,210 - EX31_RS23565 0.18 +1.8 478,210 - EX31_RS23565 0.18 -0.3 478,210 - EX31_RS23565 0.18 +0.5 478,210 - EX31_RS23565 0.18 +0.8 478,234 + EX31_RS23565 0.21 -1.1 478,235 - EX31_RS23565 0.21 +0.5 478,235 - EX31_RS23565 0.21 +1.8 478,320 + EX31_RS23565 0.29 +0.8 478,321 - EX31_RS23565 0.29 +0.8 478,321 - EX31_RS23565 0.29 -0.4 478,321 - EX31_RS23565 0.29 +1.1
Or see this region's nucleotide sequence