Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23535 and EX31_RS23540 are separated by 126 nucleotides EX31_RS23540 and EX31_RS23545 are separated by 203 nucleotides EX31_RS23545 and EX31_RS23550 are separated by 66 nucleotides EX31_RS23550 and EX31_RS23555 are separated by 85 nucleotides
EX31_RS23535: EX31_RS23535 - CDF family zinc transporter ZitB, at 473,284 to 474,237
_RS23535
EX31_RS23540: EX31_RS23540 - hypothetical protein, at 474,364 to 474,693
_RS23540
EX31_RS23545: EX31_RS23545 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 474,897 to 475,949
_RS23545
EX31_RS23550: EX31_RS23550 - GNAT family N-acetyltransferase, at 476,016 to 476,489
_RS23550
EX31_RS23555: EX31_RS23555 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 476,575 to 477,327
_RS23555
Position (kb) 474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 474.009 kb on - strand, within EX31_RS23535 at 474.009 kb on - strand, within EX31_RS23535 at 474.036 kb on + strand, within EX31_RS23535 at 474.036 kb on + strand, within EX31_RS23535 at 474.037 kb on - strand, within EX31_RS23535 at 474.042 kb on + strand, within EX31_RS23535 at 474.052 kb on + strand, within EX31_RS23535 at 474.174 kb on + strand at 474.175 kb on - strand at 474.220 kb on + strand at 474.221 kb on - strand at 474.221 kb on - strand at 474.237 kb on + strand at 474.237 kb on + strand at 474.237 kb on + strand at 474.237 kb on + strand at 474.238 kb on - strand at 474.238 kb on - strand at 474.238 kb on - strand at 474.241 kb on + strand at 474.241 kb on + strand at 474.241 kb on + strand at 474.241 kb on + strand at 474.241 kb on + strand at 474.241 kb on + strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.242 kb on - strand at 474.244 kb on - strand at 474.277 kb on + strand at 474.283 kb on - strand at 474.288 kb on + strand at 474.288 kb on + strand at 474.312 kb on + strand at 474.365 kb on + strand at 474.365 kb on + strand at 474.365 kb on + strand at 474.366 kb on - strand at 474.471 kb on + strand, within EX31_RS23540 at 474.510 kb on + strand, within EX31_RS23540 at 474.510 kb on + strand, within EX31_RS23540 at 474.511 kb on - strand, within EX31_RS23540 at 474.517 kb on - strand, within EX31_RS23540 at 474.632 kb on + strand, within EX31_RS23540 at 474.632 kb on + strand, within EX31_RS23540 at 474.632 kb on + strand, within EX31_RS23540 at 474.632 kb on + strand, within EX31_RS23540 at 474.632 kb on + strand, within EX31_RS23540 at 474.749 kb on + strand at 474.757 kb on + strand at 474.757 kb on + strand at 474.757 kb on + strand at 474.758 kb on - strand at 474.761 kb on + strand at 474.761 kb on + strand at 474.770 kb on + strand at 474.770 kb on + strand at 474.770 kb on + strand at 474.770 kb on + strand at 474.770 kb on + strand at 474.770 kb on + strand at 474.771 kb on - strand at 474.771 kb on - strand at 474.800 kb on - strand at 474.806 kb on - strand at 474.833 kb on - strand at 474.839 kb on - strand at 474.839 kb on - strand at 474.839 kb on - strand at 474.873 kb on + strand at 474.896 kb on + strand at 474.896 kb on + strand at 474.897 kb on - strand at 474.897 kb on - strand at 475.028 kb on + strand, within EX31_RS23545 at 475.028 kb on + strand, within EX31_RS23545 at 475.028 kb on + strand, within EX31_RS23545 at 475.028 kb on + strand, within EX31_RS23545 at 475.110 kb on + strand, within EX31_RS23545 at 475.111 kb on - strand, within EX31_RS23545 at 475.176 kb on + strand, within EX31_RS23545 at 475.176 kb on + strand, within EX31_RS23545 at 475.220 kb on + strand, within EX31_RS23545 at 475.238 kb on + strand, within EX31_RS23545 at 475.295 kb on + strand, within EX31_RS23545 at 475.340 kb on + strand, within EX31_RS23545 at 475.340 kb on + strand, within EX31_RS23545 at 475.350 kb on + strand, within EX31_RS23545 at 475.351 kb on - strand, within EX31_RS23545 at 475.391 kb on + strand, within EX31_RS23545 at 475.408 kb on + strand, within EX31_RS23545 at 475.432 kb on + strand, within EX31_RS23545 at 475.475 kb on + strand, within EX31_RS23545 at 475.575 kb on - strand, within EX31_RS23545 at 475.586 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.617 kb on + strand, within EX31_RS23545 at 475.618 kb on - strand, within EX31_RS23545 at 475.683 kb on - strand, within EX31_RS23545 at 475.683 kb on - strand, within EX31_RS23545 at 475.712 kb on + strand, within EX31_RS23545 at 475.712 kb on + strand, within EX31_RS23545 at 475.713 kb on - strand, within EX31_RS23545 at 475.855 kb on - strand at 475.966 kb on + strand at 475.966 kb on + strand at 475.966 kb on + strand at 476.018 kb on - strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.039 kb on + strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.040 kb on - strand at 476.074 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.147 kb on + strand, within EX31_RS23550 at 476.148 kb on - strand, within EX31_RS23550 at 476.148 kb on - strand, within EX31_RS23550 at 476.339 kb on + strand, within EX31_RS23550 at 476.397 kb on - strand, within EX31_RS23550 at 476.401 kb on + strand, within EX31_RS23550 at 476.402 kb on - strand, within EX31_RS23550 at 476.502 kb on - strand at 476.502 kb on - strand at 476.512 kb on - strand at 476.544 kb on - strand at 476.544 kb on - strand at 476.557 kb on - strand at 476.557 kb on - strand at 476.557 kb on - strand at 476.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 474,009 - EX31_RS23535 0.76 -1.1 474,009 - EX31_RS23535 0.76 +0.8 474,036 + EX31_RS23535 0.79 +0.8 474,036 + EX31_RS23535 0.79 +0.2 474,037 - EX31_RS23535 0.79 -0.2 474,042 + EX31_RS23535 0.79 -0.8 474,052 + EX31_RS23535 0.81 -0.3 474,174 + +0.4 474,175 - +0.5 474,220 + -0.1 474,221 - +0.1 474,221 - +0.6 474,237 + -0.8 474,237 + +0.2 474,237 + +0.4 474,237 + -0.6 474,238 - +0.6 474,238 - -0.8 474,238 - -1.0 474,241 + -2.8 474,241 + -0.2 474,241 + +0.4 474,241 + +1.4 474,241 + -0.8 474,241 + +0.8 474,242 - -0.2 474,242 - -0.3 474,242 - -0.0 474,242 - +0.8 474,242 - -1.5 474,242 - -0.2 474,242 - -1.5 474,242 - +0.7 474,244 - -0.2 474,277 + +0.2 474,283 - +0.5 474,288 + +0.1 474,288 + +0.4 474,312 + -1.3 474,365 + +0.8 474,365 + -0.2 474,365 + +0.3 474,366 - -0.1 474,471 + EX31_RS23540 0.32 +1.4 474,510 + EX31_RS23540 0.44 -0.1 474,510 + EX31_RS23540 0.44 -2.3 474,511 - EX31_RS23540 0.45 -1.3 474,517 - EX31_RS23540 0.46 +0.8 474,632 + EX31_RS23540 0.81 -0.2 474,632 + EX31_RS23540 0.81 -1.2 474,632 + EX31_RS23540 0.81 +1.3 474,632 + EX31_RS23540 0.81 +2.4 474,632 + EX31_RS23540 0.81 +0.8 474,749 + +2.1 474,757 + +0.2 474,757 + -0.5 474,757 + +0.4 474,758 - +0.2 474,761 + +1.4 474,761 + -2.0 474,770 + +0.8 474,770 + -0.8 474,770 + +0.8 474,770 + +0.4 474,770 + +1.0 474,770 + +0.5 474,771 - -0.3 474,771 - -0.6 474,800 - +0.8 474,806 - -0.3 474,833 - +1.2 474,839 - -0.9 474,839 - +1.0 474,839 - -1.5 474,873 + -0.5 474,896 + +3.4 474,896 + -2.0 474,897 - +0.8 474,897 - +0.2 475,028 + EX31_RS23545 0.12 +0.4 475,028 + EX31_RS23545 0.12 +0.6 475,028 + EX31_RS23545 0.12 +0.6 475,028 + EX31_RS23545 0.12 -0.4 475,110 + EX31_RS23545 0.20 -1.3 475,111 - EX31_RS23545 0.20 -0.0 475,176 + EX31_RS23545 0.26 +0.3 475,176 + EX31_RS23545 0.26 -0.8 475,220 + EX31_RS23545 0.31 +0.1 475,238 + EX31_RS23545 0.32 +0.8 475,295 + EX31_RS23545 0.38 +1.6 475,340 + EX31_RS23545 0.42 -1.2 475,340 + EX31_RS23545 0.42 +0.4 475,350 + EX31_RS23545 0.43 +1.6 475,351 - EX31_RS23545 0.43 +0.0 475,391 + EX31_RS23545 0.47 -0.2 475,408 + EX31_RS23545 0.49 +1.0 475,432 + EX31_RS23545 0.51 +0.5 475,475 + EX31_RS23545 0.55 +1.2 475,575 - EX31_RS23545 0.64 -1.5 475,586 + EX31_RS23545 0.65 -0.2 475,617 + EX31_RS23545 0.68 +0.8 475,617 + EX31_RS23545 0.68 -2.6 475,617 + EX31_RS23545 0.68 +0.0 475,618 - EX31_RS23545 0.68 +1.8 475,683 - EX31_RS23545 0.75 +1.3 475,683 - EX31_RS23545 0.75 -0.2 475,712 + EX31_RS23545 0.77 -1.0 475,712 + EX31_RS23545 0.77 +0.8 475,713 - EX31_RS23545 0.77 +0.8 475,855 - +0.1 475,966 + +0.8 475,966 + +1.6 475,966 + +0.2 476,018 - -0.2 476,039 + -0.5 476,039 + -0.8 476,039 + +1.6 476,039 + -0.2 476,039 + +0.6 476,039 + +1.4 476,040 - +2.6 476,040 - -1.2 476,040 - +2.1 476,040 - +0.8 476,040 - +0.4 476,040 - +0.8 476,040 - +0.1 476,040 - +0.8 476,040 - +1.2 476,074 + EX31_RS23550 0.12 -0.6 476,147 + EX31_RS23550 0.28 -0.1 476,147 + EX31_RS23550 0.28 -0.2 476,147 + EX31_RS23550 0.28 +0.2 476,147 + EX31_RS23550 0.28 +0.4 476,147 + EX31_RS23550 0.28 -0.8 476,147 + EX31_RS23550 0.28 -2.2 476,148 - EX31_RS23550 0.28 +1.2 476,148 - EX31_RS23550 0.28 +0.0 476,339 + EX31_RS23550 0.68 +0.8 476,397 - EX31_RS23550 0.80 +1.4 476,401 + EX31_RS23550 0.81 -0.2 476,402 - EX31_RS23550 0.81 +0.8 476,502 - +0.8 476,502 - -0.6 476,512 - -1.2 476,544 - +1.2 476,544 - +1.7 476,557 - +0.5 476,557 - -0.2 476,557 - +0.8 476,643 - +0.8
Or see this region's nucleotide sequence