Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23445 and EX31_RS23450 are separated by 92 nucleotides EX31_RS23450 and EX31_RS23455 overlap by 1 nucleotides
EX31_RS23445: EX31_RS23445 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 457,230 to 458,459
_RS23445
EX31_RS23450: EX31_RS23450 - ADP-forming succinate--CoA ligase subunit beta, at 458,552 to 459,718
_RS23450
EX31_RS23455: EX31_RS23455 - succinate--CoA ligase subunit alpha, at 459,718 to 460,590
_RS23455
Position (kb) 458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 458.346 kb on + strand at 458.346 kb on + strand at 458.457 kb on + strand at 458.457 kb on + strand at 458.458 kb on - strand at 458.534 kb on - strand at 458.802 kb on - strand, within EX31_RS23450 at 458.929 kb on + strand, within EX31_RS23450 at 458.929 kb on + strand, within EX31_RS23450 at 458.929 kb on + strand, within EX31_RS23450 at 458.930 kb on - strand, within EX31_RS23450 at 459.305 kb on + strand, within EX31_RS23450 at 459.305 kb on + strand, within EX31_RS23450 at 459.306 kb on - strand, within EX31_RS23450 at 459.306 kb on - strand, within EX31_RS23450 at 459.604 kb on + strand at 459.750 kb on + strand at 459.750 kb on + strand at 459.899 kb on + strand, within EX31_RS23455 at 459.906 kb on + strand, within EX31_RS23455 at 459.932 kb on - strand, within EX31_RS23455 at 460.002 kb on + strand, within EX31_RS23455 at 460.098 kb on + strand, within EX31_RS23455 at 460.192 kb on + strand, within EX31_RS23455 at 460.193 kb on - strand, within EX31_RS23455 at 460.236 kb on + strand, within EX31_RS23455 at 460.275 kb on + strand, within EX31_RS23455 at 460.378 kb on + strand, within EX31_RS23455 at 460.378 kb on + strand, within EX31_RS23455 at 460.414 kb on + strand, within EX31_RS23455 at 460.414 kb on + strand, within EX31_RS23455 at 460.449 kb on + strand, within EX31_RS23455 at 460.449 kb on + strand, within EX31_RS23455 at 460.592 kb on + strand at 460.592 kb on + strand at 460.592 kb on + strand at 460.592 kb on + strand at 460.592 kb on + strand at 460.593 kb on - strand at 460.593 kb on - strand at 460.595 kb on + strand at 460.618 kb on + strand at 460.641 kb on - strand at 460.641 kb on - strand at 460.644 kb on + strand at 460.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 458,346 + -0.2 458,346 + -1.0 458,457 + -1.0 458,457 + -1.4 458,458 - -2.0 458,534 - -2.0 458,802 - EX31_RS23450 0.21 -0.2 458,929 + EX31_RS23450 0.32 +0.8 458,929 + EX31_RS23450 0.32 -2.9 458,929 + EX31_RS23450 0.32 -3.9 458,930 - EX31_RS23450 0.32 -0.8 459,305 + EX31_RS23450 0.65 -3.4 459,305 + EX31_RS23450 0.65 -0.8 459,306 - EX31_RS23450 0.65 -0.2 459,306 - EX31_RS23450 0.65 -2.5 459,604 + -3.4 459,750 + -1.2 459,750 + -0.2 459,899 + EX31_RS23455 0.21 -1.2 459,906 + EX31_RS23455 0.22 -0.8 459,932 - EX31_RS23455 0.25 -1.8 460,002 + EX31_RS23455 0.33 -1.8 460,098 + EX31_RS23455 0.44 -1.2 460,192 + EX31_RS23455 0.54 -1.8 460,193 - EX31_RS23455 0.54 -1.2 460,236 + EX31_RS23455 0.59 -0.8 460,275 + EX31_RS23455 0.64 +0.8 460,378 + EX31_RS23455 0.76 -1.2 460,378 + EX31_RS23455 0.76 +0.8 460,414 + EX31_RS23455 0.80 +0.8 460,414 + EX31_RS23455 0.80 +0.8 460,449 + EX31_RS23455 0.84 -2.6 460,449 + EX31_RS23455 0.84 -1.5 460,592 + -1.6 460,592 + -0.8 460,592 + -0.3 460,592 + -0.3 460,592 + -0.6 460,593 - +1.4 460,593 - -2.3 460,595 + -0.2 460,618 + -0.5 460,641 - -0.2 460,641 - -0.8 460,644 + +0.2 460,694 + -0.8
Or see this region's nucleotide sequence