Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22850 and EX31_RS22855 are separated by 173 nucleotides EX31_RS22855 and EX31_RS22860 are separated by 54 nucleotides EX31_RS22860 and EX31_RS22865 are separated by 31 nucleotides EX31_RS22865 and EX31_RS22870 are separated by 9 nucleotides
EX31_RS22850: EX31_RS22850 - DUF4942 domain-containing protein, at 329,839 to 330,690
_RS22850
EX31_RS22855: EX31_RS22855 - toxin CbtA, at 330,864 to 331,238
_RS22855
EX31_RS22860: EX31_RS22860 - type IV toxin-antitoxin system YeeU family antitoxin, at 331,293 to 331,661
_RS22860
EX31_RS22865: EX31_RS22865 - DUF987 domain-containing protein, at 331,693 to 331,914
_RS22865
EX31_RS22870: EX31_RS22870 - DNA repair protein RadC, at 331,924 to 332,397
_RS22870
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 329.883 kb on + strand at 329.883 kb on + strand at 329.883 kb on + strand at 329.884 kb on - strand at 329.884 kb on - strand at 329.948 kb on + strand, within EX31_RS22850 at 329.995 kb on - strand, within EX31_RS22850 at 329.995 kb on - strand, within EX31_RS22850 at 330.049 kb on - strand, within EX31_RS22850 at 330.049 kb on - strand, within EX31_RS22850 at 330.123 kb on + strand, within EX31_RS22850 at 330.124 kb on - strand, within EX31_RS22850 at 330.137 kb on + strand, within EX31_RS22850 at 330.154 kb on - strand, within EX31_RS22850 at 330.158 kb on - strand, within EX31_RS22850 at 330.158 kb on - strand, within EX31_RS22850 at 330.158 kb on - strand, within EX31_RS22850 at 330.163 kb on - strand, within EX31_RS22850 at 330.211 kb on + strand, within EX31_RS22850 at 330.211 kb on + strand, within EX31_RS22850 at 330.211 kb on + strand, within EX31_RS22850 at 330.220 kb on - strand, within EX31_RS22850 at 330.231 kb on + strand, within EX31_RS22850 at 330.232 kb on - strand, within EX31_RS22850 at 330.232 kb on - strand, within EX31_RS22850 at 330.282 kb on + strand, within EX31_RS22850 at 330.283 kb on - strand, within EX31_RS22850 at 330.435 kb on + strand, within EX31_RS22850 at 330.525 kb on + strand, within EX31_RS22850 at 330.526 kb on - strand, within EX31_RS22850 at 330.526 kb on - strand, within EX31_RS22850 at 330.535 kb on + strand, within EX31_RS22850 at 330.535 kb on + strand, within EX31_RS22850 at 330.535 kb on + strand, within EX31_RS22850 at 330.535 kb on + strand, within EX31_RS22850 at 330.535 kb on + strand, within EX31_RS22850 at 330.536 kb on - strand, within EX31_RS22850 at 330.536 kb on - strand, within EX31_RS22850 at 330.536 kb on - strand, within EX31_RS22850 at 330.580 kb on + strand, within EX31_RS22850 at 330.580 kb on + strand, within EX31_RS22850 at 330.580 kb on + strand, within EX31_RS22850 at 330.609 kb on + strand at 330.609 kb on + strand at 330.609 kb on + strand at 330.609 kb on + strand at 330.609 kb on + strand at 330.610 kb on - strand at 330.610 kb on - strand at 330.610 kb on - strand at 330.610 kb on - strand at 330.643 kb on - strand at 330.652 kb on + strand at 330.652 kb on + strand at 330.652 kb on + strand at 330.653 kb on - strand at 330.653 kb on - strand at 330.679 kb on + strand at 330.679 kb on + strand at 330.680 kb on - strand at 330.696 kb on - strand at 330.704 kb on + strand at 330.704 kb on + strand at 330.704 kb on + strand at 330.704 kb on + strand at 330.704 kb on + strand at 330.705 kb on + strand at 330.705 kb on - strand at 330.705 kb on - strand at 330.705 kb on - strand at 330.706 kb on + strand at 330.706 kb on + strand at 330.706 kb on + strand at 330.706 kb on + strand at 330.707 kb on - strand at 330.707 kb on - strand at 330.707 kb on - strand at 330.753 kb on + strand at 330.754 kb on - strand at 330.754 kb on - strand at 330.772 kb on + strand at 330.772 kb on + strand at 330.773 kb on - strand at 330.773 kb on - strand at 330.817 kb on + strand at 330.817 kb on + strand at 330.817 kb on + strand at 330.817 kb on + strand at 330.818 kb on - strand at 330.818 kb on - strand at 330.818 kb on - strand at 330.881 kb on + strand at 330.881 kb on + strand at 330.881 kb on + strand at 330.902 kb on + strand, within EX31_RS22855 at 330.903 kb on - strand, within EX31_RS22855 at 330.906 kb on + strand, within EX31_RS22855 at 330.906 kb on + strand, within EX31_RS22855 at 330.906 kb on + strand, within EX31_RS22855 at 330.906 kb on + strand, within EX31_RS22855 at 330.906 kb on + strand, within EX31_RS22855 at 330.907 kb on - strand, within EX31_RS22855 at 330.907 kb on - strand, within EX31_RS22855 at 330.907 kb on - strand, within EX31_RS22855 at 330.911 kb on + strand, within EX31_RS22855 at 330.911 kb on + strand, within EX31_RS22855 at 330.911 kb on + strand, within EX31_RS22855 at 330.911 kb on + strand, within EX31_RS22855 at 330.912 kb on - strand, within EX31_RS22855 at 330.912 kb on - strand, within EX31_RS22855 at 330.912 kb on - strand, within EX31_RS22855 at 330.912 kb on - strand, within EX31_RS22855 at 330.914 kb on - strand, within EX31_RS22855 at 330.960 kb on - strand, within EX31_RS22855 at 330.974 kb on + strand, within EX31_RS22855 at 330.974 kb on + strand, within EX31_RS22855 at 330.974 kb on + strand, within EX31_RS22855 at 330.975 kb on - strand, within EX31_RS22855 at 330.999 kb on - strand, within EX31_RS22855 at 331.030 kb on + strand, within EX31_RS22855 at 331.031 kb on - strand, within EX31_RS22855 at 331.031 kb on - strand, within EX31_RS22855 at 331.031 kb on - strand, within EX31_RS22855 at 331.138 kb on + strand, within EX31_RS22855 at 331.139 kb on - strand, within EX31_RS22855 at 331.139 kb on - strand, within EX31_RS22855 at 331.139 kb on - strand, within EX31_RS22855 at 331.228 kb on - strand at 331.275 kb on + strand at 331.276 kb on - strand at 331.279 kb on + strand at 331.279 kb on + strand at 331.280 kb on - strand at 331.325 kb on + strand at 331.325 kb on + strand at 331.325 kb on + strand at 331.325 kb on + strand at 331.326 kb on - strand at 331.326 kb on - strand at 331.326 kb on - strand at 331.326 kb on - strand at 331.332 kb on - strand, within EX31_RS22860 at 331.332 kb on - strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.333 kb on + strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.334 kb on - strand, within EX31_RS22860 at 331.339 kb on + strand, within EX31_RS22860 at 331.339 kb on + strand, within EX31_RS22860 at 331.340 kb on - strand, within EX31_RS22860 at 331.508 kb on + strand, within EX31_RS22860 at 331.509 kb on - strand, within EX31_RS22860 at 331.515 kb on - strand, within EX31_RS22860 at 331.586 kb on + strand, within EX31_RS22860 at 331.635 kb on + strand at 331.636 kb on - strand at 331.667 kb on + strand at 331.667 kb on + strand at 331.667 kb on + strand at 331.667 kb on + strand at 331.668 kb on - strand at 331.668 kb on - strand at 331.675 kb on + strand at 331.675 kb on + strand at 331.675 kb on + strand at 331.675 kb on + strand at 331.676 kb on - strand at 331.677 kb on + strand at 331.677 kb on + strand at 331.694 kb on + strand at 331.694 kb on + strand at 331.694 kb on + strand at 331.695 kb on - strand at 331.695 kb on - strand at 331.695 kb on - strand at 331.725 kb on - strand, within EX31_RS22865 at 331.827 kb on + strand, within EX31_RS22865 at 331.827 kb on + strand, within EX31_RS22865 at 331.827 kb on + strand, within EX31_RS22865 at 331.827 kb on + strand, within EX31_RS22865 at 331.828 kb on - strand, within EX31_RS22865 at 331.828 kb on - strand, within EX31_RS22865 at 331.828 kb on - strand, within EX31_RS22865 at 331.828 kb on - strand, within EX31_RS22865 at 331.830 kb on - strand, within EX31_RS22865 at 331.830 kb on - strand, within EX31_RS22865 at 331.833 kb on + strand, within EX31_RS22865 at 331.877 kb on + strand, within EX31_RS22865 at 331.877 kb on + strand, within EX31_RS22865 at 331.878 kb on - strand, within EX31_RS22865 at 331.888 kb on - strand, within EX31_RS22865 at 331.888 kb on - strand, within EX31_RS22865 at 331.900 kb on - strand at 331.900 kb on - strand at 332.033 kb on - strand, within EX31_RS22870 at 332.033 kb on - strand, within EX31_RS22870 at 332.089 kb on - strand, within EX31_RS22870 at 332.126 kb on - strand, within EX31_RS22870 at 332.205 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.213 kb on + strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870 at 332.214 kb on - strand, within EX31_RS22870
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 329,883 + +0.5 329,883 + +0.3 329,883 + +1.3 329,884 - +0.8 329,884 - -0.7 329,948 + EX31_RS22850 0.13 +0.9 329,995 - EX31_RS22850 0.18 +0.9 329,995 - EX31_RS22850 0.18 +2.3 330,049 - EX31_RS22850 0.25 -0.2 330,049 - EX31_RS22850 0.25 -0.7 330,123 + EX31_RS22850 0.33 +0.9 330,124 - EX31_RS22850 0.33 -0.5 330,137 + EX31_RS22850 0.35 +0.7 330,154 - EX31_RS22850 0.37 -0.1 330,158 - EX31_RS22850 0.37 -0.9 330,158 - EX31_RS22850 0.37 +0.7 330,158 - EX31_RS22850 0.37 -1.4 330,163 - EX31_RS22850 0.38 +0.3 330,211 + EX31_RS22850 0.44 -0.1 330,211 + EX31_RS22850 0.44 -0.7 330,211 + EX31_RS22850 0.44 -0.9 330,220 - EX31_RS22850 0.45 +0.3 330,231 + EX31_RS22850 0.46 +0.7 330,232 - EX31_RS22850 0.46 +1.0 330,232 - EX31_RS22850 0.46 -0.8 330,282 + EX31_RS22850 0.52 +0.9 330,283 - EX31_RS22850 0.52 -0.3 330,435 + EX31_RS22850 0.70 +0.1 330,525 + EX31_RS22850 0.81 -0.7 330,526 - EX31_RS22850 0.81 -0.1 330,526 - EX31_RS22850 0.81 -0.4 330,535 + EX31_RS22850 0.82 +0.4 330,535 + EX31_RS22850 0.82 +0.3 330,535 + EX31_RS22850 0.82 +0.9 330,535 + EX31_RS22850 0.82 +1.9 330,535 + EX31_RS22850 0.82 -0.7 330,536 - EX31_RS22850 0.82 +0.1 330,536 - EX31_RS22850 0.82 -0.7 330,536 - EX31_RS22850 0.82 +0.9 330,580 + EX31_RS22850 0.87 +0.9 330,580 + EX31_RS22850 0.87 -0.1 330,580 + EX31_RS22850 0.87 +0.5 330,609 + -0.2 330,609 + -0.2 330,609 + -0.4 330,609 + +1.0 330,609 + -0.4 330,610 - -0.1 330,610 - -0.4 330,610 - +0.3 330,610 - -0.1 330,643 - -0.2 330,652 + -0.6 330,652 + -0.8 330,652 + -0.3 330,653 - +0.9 330,653 - +1.2 330,679 + -1.2 330,679 + +0.8 330,680 - +0.2 330,696 - +0.6 330,704 + +0.1 330,704 + +1.7 330,704 + +0.9 330,704 + +0.3 330,704 + +1.9 330,705 + +0.5 330,705 - +0.7 330,705 - +1.4 330,705 - +0.4 330,706 + -1.1 330,706 + -0.9 330,706 + -0.1 330,706 + +1.9 330,707 - +0.3 330,707 - +0.0 330,707 - +0.9 330,753 + -0.3 330,754 - +0.5 330,754 - -0.1 330,772 + +2.2 330,772 + -1.3 330,773 - -0.9 330,773 - +0.3 330,817 + +0.6 330,817 + -1.2 330,817 + +0.8 330,817 + +0.8 330,818 - +0.2 330,818 - -1.1 330,818 - +0.3 330,881 + -0.9 330,881 + +1.1 330,881 + +0.2 330,902 + EX31_RS22855 0.10 +0.2 330,903 - EX31_RS22855 0.10 +1.9 330,906 + EX31_RS22855 0.11 +3.4 330,906 + EX31_RS22855 0.11 +0.7 330,906 + EX31_RS22855 0.11 +0.3 330,906 + EX31_RS22855 0.11 -1.1 330,906 + EX31_RS22855 0.11 +0.5 330,907 - EX31_RS22855 0.11 +2.0 330,907 - EX31_RS22855 0.11 +1.5 330,907 - EX31_RS22855 0.11 -0.2 330,911 + EX31_RS22855 0.13 +0.3 330,911 + EX31_RS22855 0.13 -0.9 330,911 + EX31_RS22855 0.13 +0.7 330,911 + EX31_RS22855 0.13 +0.6 330,912 - EX31_RS22855 0.13 +0.1 330,912 - EX31_RS22855 0.13 +1.6 330,912 - EX31_RS22855 0.13 -0.1 330,912 - EX31_RS22855 0.13 -0.1 330,914 - EX31_RS22855 0.13 -0.2 330,960 - EX31_RS22855 0.26 -0.1 330,974 + EX31_RS22855 0.29 +0.5 330,974 + EX31_RS22855 0.29 -0.3 330,974 + EX31_RS22855 0.29 -0.7 330,975 - EX31_RS22855 0.30 +1.8 330,999 - EX31_RS22855 0.36 +0.9 331,030 + EX31_RS22855 0.44 +0.6 331,031 - EX31_RS22855 0.45 +2.2 331,031 - EX31_RS22855 0.45 +0.9 331,031 - EX31_RS22855 0.45 +0.6 331,138 + EX31_RS22855 0.73 +0.9 331,139 - EX31_RS22855 0.73 +2.5 331,139 - EX31_RS22855 0.73 +0.8 331,139 - EX31_RS22855 0.73 +0.7 331,228 - -1.5 331,275 + -0.9 331,276 - -1.5 331,279 + +0.9 331,279 + +0.1 331,280 - +0.9 331,325 + +0.9 331,325 + -1.1 331,325 + -2.1 331,325 + -0.1 331,326 - +0.6 331,326 - -0.1 331,326 - +3.1 331,326 - +0.9 331,332 - EX31_RS22860 0.11 +0.7 331,332 - EX31_RS22860 0.11 +1.2 331,333 + EX31_RS22860 0.11 -0.7 331,333 + EX31_RS22860 0.11 -0.2 331,333 + EX31_RS22860 0.11 -0.2 331,333 + EX31_RS22860 0.11 +0.5 331,333 + EX31_RS22860 0.11 +1.4 331,333 + EX31_RS22860 0.11 +0.6 331,333 + EX31_RS22860 0.11 +2.3 331,333 + EX31_RS22860 0.11 -0.7 331,333 + EX31_RS22860 0.11 +0.8 331,333 + EX31_RS22860 0.11 -1.1 331,333 + EX31_RS22860 0.11 +1.3 331,333 + EX31_RS22860 0.11 +1.1 331,333 + EX31_RS22860 0.11 -0.4 331,333 + EX31_RS22860 0.11 -1.7 331,333 + EX31_RS22860 0.11 +1.8 331,333 + EX31_RS22860 0.11 +1.7 331,333 + EX31_RS22860 0.11 +1.5 331,334 - EX31_RS22860 0.11 +1.2 331,334 - EX31_RS22860 0.11 +1.5 331,334 - EX31_RS22860 0.11 -0.1 331,334 - EX31_RS22860 0.11 +1.9 331,334 - EX31_RS22860 0.11 -0.7 331,334 - EX31_RS22860 0.11 +1.5 331,334 - EX31_RS22860 0.11 -0.1 331,334 - EX31_RS22860 0.11 +0.3 331,339 + EX31_RS22860 0.12 -0.9 331,339 + EX31_RS22860 0.12 -0.1 331,340 - EX31_RS22860 0.13 +0.9 331,508 + EX31_RS22860 0.58 +2.2 331,509 - EX31_RS22860 0.59 -0.4 331,515 - EX31_RS22860 0.60 -2.1 331,586 + EX31_RS22860 0.79 +0.7 331,635 + +1.1 331,636 - +1.4 331,667 + +0.2 331,667 + +0.5 331,667 + -0.2 331,667 + +0.9 331,668 - +1.2 331,668 - -1.4 331,675 + -0.2 331,675 + -0.7 331,675 + +0.1 331,675 + -0.8 331,676 - +1.5 331,677 + +0.3 331,677 + +0.9 331,694 + +1.7 331,694 + +1.4 331,694 + -0.9 331,695 - -0.5 331,695 - -0.1 331,695 - -0.1 331,725 - EX31_RS22865 0.14 -1.4 331,827 + EX31_RS22865 0.60 +0.9 331,827 + EX31_RS22865 0.60 -0.1 331,827 + EX31_RS22865 0.60 -0.0 331,827 + EX31_RS22865 0.60 +0.9 331,828 - EX31_RS22865 0.61 -0.9 331,828 - EX31_RS22865 0.61 -1.1 331,828 - EX31_RS22865 0.61 -0.5 331,828 - EX31_RS22865 0.61 +0.6 331,830 - EX31_RS22865 0.62 +0.8 331,830 - EX31_RS22865 0.62 +0.9 331,833 + EX31_RS22865 0.63 +0.3 331,877 + EX31_RS22865 0.83 -0.3 331,877 + EX31_RS22865 0.83 +0.9 331,878 - EX31_RS22865 0.83 +1.0 331,888 - EX31_RS22865 0.88 +0.1 331,888 - EX31_RS22865 0.88 +0.6 331,900 - -2.4 331,900 - +1.5 332,033 - EX31_RS22870 0.23 +0.5 332,033 - EX31_RS22870 0.23 -0.8 332,089 - EX31_RS22870 0.35 +0.7 332,126 - EX31_RS22870 0.43 +1.1 332,205 + EX31_RS22870 0.59 +0.3 332,213 + EX31_RS22870 0.61 +0.4 332,213 + EX31_RS22870 0.61 -0.1 332,213 + EX31_RS22870 0.61 +1.1 332,213 + EX31_RS22870 0.61 +0.6 332,213 + EX31_RS22870 0.61 +0.9 332,213 + EX31_RS22870 0.61 +0.7 332,213 + EX31_RS22870 0.61 +0.5 332,213 + EX31_RS22870 0.61 -0.1 332,213 + EX31_RS22870 0.61 +2.9 332,214 - EX31_RS22870 0.61 +1.2 332,214 - EX31_RS22870 0.61 -0.4 332,214 - EX31_RS22870 0.61 +1.8 332,214 - EX31_RS22870 0.61 -1.3 332,214 - EX31_RS22870 0.61 +1.4 332,214 - EX31_RS22870 0.61 +0.3 332,214 - EX31_RS22870 0.61 -1.2
Or see this region's nucleotide sequence