Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22795 and EX31_RS22800 are separated by 1 nucleotides EX31_RS22800 and EX31_RS22805 are separated by 448 nucleotides
EX31_RS22795: EX31_RS22795 - succinyl-diaminopimelate desuccinylase, at 318,227 to 319,354
_RS22795
EX31_RS22800: EX31_RS22800 - ArsC family reductase, at 319,356 to 319,739
_RS22800
EX31_RS22805: EX31_RS22805 - multidrug efflux RND transporter permease AcrD, at 320,188 to 323,343
_RS22805
Position (kb) 319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.358 kb on - strand at 319.358 kb on - strand at 319.575 kb on - strand, within EX31_RS22800 at 319.575 kb on - strand, within EX31_RS22800 at 319.710 kb on - strand at 319.710 kb on - strand at 319.710 kb on - strand at 319.710 kb on - strand at 319.710 kb on - strand at 319.710 kb on - strand at 319.760 kb on + strand at 319.761 kb on - strand at 319.777 kb on - strand at 319.777 kb on - strand at 319.789 kb on - strand at 319.812 kb on + strand at 319.812 kb on + strand at 319.812 kb on + strand at 319.812 kb on + strand at 319.812 kb on + strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.813 kb on - strand at 319.908 kb on + strand at 319.908 kb on + strand at 319.908 kb on + strand at 319.908 kb on + strand at 319.909 kb on - strand at 319.909 kb on - strand at 319.909 kb on - strand at 319.909 kb on - strand at 319.909 kb on - strand at 319.956 kb on + strand at 319.956 kb on + strand at 319.956 kb on + strand at 319.957 kb on - strand at 319.975 kb on + strand at 319.984 kb on + strand at 319.984 kb on + strand at 319.984 kb on + strand at 319.984 kb on + strand at 319.984 kb on + strand at 319.984 kb on + strand at 319.985 kb on - strand at 319.997 kb on + strand at 319.997 kb on + strand at 319.998 kb on - strand at 319.998 kb on - strand at 320.059 kb on + strand at 320.061 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.088 kb on + strand at 320.089 kb on - strand at 320.089 kb on - strand at 320.089 kb on - strand at 320.089 kb on - strand at 320.099 kb on + strand at 320.099 kb on + strand at 320.100 kb on - strand at 320.100 kb on - strand at 320.121 kb on + strand at 320.121 kb on + strand at 320.133 kb on - strand at 320.221 kb on - strand at 320.231 kb on - strand at 320.287 kb on + strand at 320.288 kb on - strand at 320.560 kb on - strand, within EX31_RS22805 at 320.573 kb on + strand, within EX31_RS22805 at 320.573 kb on + strand, within EX31_RS22805 at 320.573 kb on + strand, within EX31_RS22805 at 320.574 kb on - strand, within EX31_RS22805 at 320.574 kb on - strand, within EX31_RS22805 at 320.574 kb on - strand, within EX31_RS22805 at 320.720 kb on + strand, within EX31_RS22805 at 320.720 kb on + strand, within EX31_RS22805
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 319,358 - -0.6 319,358 - -1.1 319,575 - EX31_RS22800 0.57 -1.2 319,575 - EX31_RS22800 0.57 -1.1 319,710 - -0.6 319,710 - +1.4 319,710 - +1.5 319,710 - +0.9 319,710 - +1.3 319,710 - -0.6 319,760 + -1.4 319,761 - -0.1 319,777 - -1.1 319,777 - +0.3 319,789 - -0.5 319,812 + +1.9 319,812 + -0.6 319,812 + +0.6 319,812 + +0.9 319,812 + +1.7 319,813 - -0.4 319,813 - +1.7 319,813 - +0.1 319,813 - -0.5 319,813 - +0.9 319,813 - +0.9 319,813 - +0.7 319,813 - +1.2 319,813 - +0.6 319,813 - -0.6 319,813 - +0.1 319,908 + -1.0 319,908 + +0.8 319,908 + -0.9 319,908 + +0.1 319,909 - +2.5 319,909 - -0.1 319,909 - +0.9 319,909 - -0.1 319,909 - -1.1 319,956 + +0.2 319,956 + -0.3 319,956 + +0.2 319,957 - -1.9 319,975 + +0.7 319,984 + +0.7 319,984 + +1.9 319,984 + -1.1 319,984 + +0.7 319,984 + -0.1 319,984 + +0.6 319,985 - -1.1 319,997 + -0.1 319,997 + -1.5 319,998 - +0.8 319,998 - +0.3 320,059 + +1.1 320,061 + +0.1 320,088 + +1.1 320,088 + +0.2 320,088 + -0.3 320,088 + +1.3 320,088 + +0.8 320,088 + +0.8 320,088 + +1.1 320,088 + +1.2 320,088 + +0.8 320,088 + +0.5 320,089 - +0.5 320,089 - -0.6 320,089 - -0.1 320,089 - +0.9 320,099 + -0.5 320,099 + -1.1 320,100 - +0.2 320,100 - +1.9 320,121 + +0.9 320,121 + -0.4 320,133 - +0.7 320,221 - +1.2 320,231 - -0.2 320,287 + -0.1 320,288 - -0.1 320,560 - EX31_RS22805 0.12 -0.3 320,573 + EX31_RS22805 0.12 +0.9 320,573 + EX31_RS22805 0.12 -0.8 320,573 + EX31_RS22805 0.12 -0.1 320,574 - EX31_RS22805 0.12 +0.9 320,574 - EX31_RS22805 0.12 +0.8 320,574 - EX31_RS22805 0.12 -0.3 320,720 + EX31_RS22805 0.17 +1.9 320,720 + EX31_RS22805 0.17 +0.3
Or see this region's nucleotide sequence