Strain Fitness in Rahnella sp. WP5 around EX31_RS22270

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22265 and EX31_RS22270 are separated by 139 nucleotidesEX31_RS22270 and EX31_RS22275 are separated by 118 nucleotidesEX31_RS22275 and EX31_RS22280 are separated by 97 nucleotides EX31_RS22265: EX31_RS22265 - peptidylprolyl isomerase, at 204,308 to 206,188 _RS22265 EX31_RS22270: EX31_RS22270 - competence protein ComEA, at 206,328 to 206,711 _RS22270 EX31_RS22275: EX31_RS22275 - YbgC/FadM family acyl-CoA thioesterase, at 206,830 to 207,231 _RS22275 EX31_RS22280: EX31_RS22280 - 7-cyano-7-deazaguanine synthase QueC, at 207,329 to 208,027 _RS22280 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.339 kb on + strand, within EX31_RS22265at 205.339 kb on + strand, within EX31_RS22265at 205.405 kb on - strand, within EX31_RS22265at 205.463 kb on + strand, within EX31_RS22265at 205.463 kb on + strand, within EX31_RS22265at 205.463 kb on + strand, within EX31_RS22265at 205.463 kb on + strand, within EX31_RS22265at 205.466 kb on + strand, within EX31_RS22265at 205.466 kb on + strand, within EX31_RS22265at 205.466 kb on + strand, within EX31_RS22265at 205.558 kb on + strand, within EX31_RS22265at 205.558 kb on + strand, within EX31_RS22265at 205.558 kb on + strand, within EX31_RS22265at 205.558 kb on + strand, within EX31_RS22265at 205.558 kb on + strand, within EX31_RS22265at 205.559 kb on - strand, within EX31_RS22265at 205.614 kb on + strand, within EX31_RS22265at 205.666 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.678 kb on + strand, within EX31_RS22265at 205.707 kb on + strand, within EX31_RS22265at 205.814 kb on - strand, within EX31_RS22265at 205.908 kb on + strand, within EX31_RS22265at 205.908 kb on + strand, within EX31_RS22265at 206.068 kb on + strandat 206.068 kb on + strandat 206.162 kb on + strandat 206.186 kb on + strandat 206.322 kb on + strandat 206.323 kb on - strandat 206.608 kb on - strand, within EX31_RS22270at 206.630 kb on + strand, within EX31_RS22270at 206.687 kb on + strandat 206.688 kb on - strandat 206.688 kb on - strandat 206.688 kb on - strandat 206.793 kb on + strandat 206.793 kb on + strandat 206.794 kb on - strandat 206.794 kb on - strandat 206.829 kb on + strandat 206.830 kb on - strandat 206.835 kb on + strandat 206.835 kb on + strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.836 kb on - strandat 206.845 kb on - strandat 206.882 kb on + strand, within EX31_RS22275at 206.882 kb on + strand, within EX31_RS22275at 206.883 kb on - strand, within EX31_RS22275at 206.883 kb on - strand, within EX31_RS22275at 206.994 kb on + strand, within EX31_RS22275at 206.995 kb on - strand, within EX31_RS22275at 207.008 kb on - strand, within EX31_RS22275at 207.024 kb on - strand, within EX31_RS22275at 207.273 kb on - strandat 207.376 kb on + strandat 207.377 kb on - strandat 207.388 kb on - strandat 207.411 kb on - strand, within EX31_RS22280at 207.459 kb on + strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.502 kb on - strand, within EX31_RS22280at 207.532 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.696 kb on + strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280at 207.697 kb on - strand, within EX31_RS22280

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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205,339 + EX31_RS22265 0.55 +1.9
205,339 + EX31_RS22265 0.55 +0.7
205,405 - EX31_RS22265 0.58 -1.0
205,463 + EX31_RS22265 0.61 -0.0
205,463 + EX31_RS22265 0.61 -0.9
205,463 + EX31_RS22265 0.61 +1.2
205,463 + EX31_RS22265 0.61 -0.4
205,466 + EX31_RS22265 0.62 +0.2
205,466 + EX31_RS22265 0.62 +0.7
205,466 + EX31_RS22265 0.62 -0.3
205,558 + EX31_RS22265 0.66 +0.3
205,558 + EX31_RS22265 0.66 -2.0
205,558 + EX31_RS22265 0.66 +1.6
205,558 + EX31_RS22265 0.66 +2.0
205,558 + EX31_RS22265 0.66 +0.3
205,559 - EX31_RS22265 0.67 +1.4
205,614 + EX31_RS22265 0.69 +0.5
205,666 + EX31_RS22265 0.72 -0.0
205,678 + EX31_RS22265 0.73 -0.0
205,678 + EX31_RS22265 0.73 +0.2
205,678 + EX31_RS22265 0.73 -0.7
205,678 + EX31_RS22265 0.73 -0.7
205,678 + EX31_RS22265 0.73 +1.8
205,678 + EX31_RS22265 0.73 -0.9
205,707 + EX31_RS22265 0.74 +0.5
205,814 - EX31_RS22265 0.80 -0.8
205,908 + EX31_RS22265 0.85 -0.0
205,908 + EX31_RS22265 0.85 +1.5
206,068 + -0.3
206,068 + +2.0
206,162 + -1.6
206,186 + -3.3
206,322 + -2.5
206,323 - +0.1
206,608 - EX31_RS22270 0.73 -1.0
206,630 + EX31_RS22270 0.79 -1.0
206,687 + +0.8
206,688 - -2.0
206,688 - -0.3
206,688 - -1.0
206,793 + -0.9
206,793 + -1.3
206,794 - +0.5
206,794 - -0.2
206,829 + +0.1
206,830 - -0.6
206,835 + -0.6
206,835 + +0.1
206,836 - +1.8
206,836 - -0.6
206,836 - +0.2
206,836 - +1.0
206,845 - -1.3
206,882 + EX31_RS22275 0.13 +0.2
206,882 + EX31_RS22275 0.13 -0.2
206,883 - EX31_RS22275 0.13 -0.5
206,883 - EX31_RS22275 0.13 +3.0
206,994 + EX31_RS22275 0.41 -1.0
206,995 - EX31_RS22275 0.41 -0.0
207,008 - EX31_RS22275 0.44 -3.0
207,024 - EX31_RS22275 0.48 -1.0
207,273 - -1.0
207,376 + +0.5
207,377 - -0.8
207,388 - +1.1
207,411 - EX31_RS22280 0.12 +0.4
207,459 + EX31_RS22280 0.19 +1.0
207,502 - EX31_RS22280 0.25 +1.3
207,502 - EX31_RS22280 0.25 -0.1
207,502 - EX31_RS22280 0.25 -0.2
207,532 + EX31_RS22280 0.29 -0.8
207,696 + EX31_RS22280 0.53 -0.2
207,696 + EX31_RS22280 0.53 +1.4
207,696 + EX31_RS22280 0.53 +2.2
207,696 + EX31_RS22280 0.53 +0.0
207,696 + EX31_RS22280 0.53 +1.6
207,697 - EX31_RS22280 0.53 -0.3
207,697 - EX31_RS22280 0.53 +0.8
207,697 - EX31_RS22280 0.53 +1.0
207,697 - EX31_RS22280 0.53 +0.2
207,697 - EX31_RS22280 0.53 -0.9
207,697 - EX31_RS22280 0.53 +0.2
207,697 - EX31_RS22280 0.53 -0.8
207,697 - EX31_RS22280 0.53 -0.2
207,697 - EX31_RS22280 0.53 +0.1
207,697 - EX31_RS22280 0.53 +1.8
207,697 - EX31_RS22280 0.53 +0.7
207,697 - EX31_RS22280 0.53 +1.2
207,697 - EX31_RS22280 0.53 +0.7
207,697 - EX31_RS22280 0.53 +0.8
207,697 - EX31_RS22280 0.53 -0.8
207,697 - EX31_RS22280 0.53 -0.0
207,697 - EX31_RS22280 0.53 +0.2
207,697 - EX31_RS22280 0.53 +0.8

Or see this region's nucleotide sequence