Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21460 and EX31_RS21465 are separated by 227 nucleotides EX31_RS21465 and EX31_RS21470 are separated by 350 nucleotides
EX31_RS21460: EX31_RS21460 - LysR family transcriptional regulator ArgP, at 34,806 to 35,708
_RS21460
EX31_RS21465: EX31_RS21465 - ribose-5-phosphate isomerase RpiA, at 35,936 to 36,598
_RS21465
EX31_RS21470: EX31_RS21470 - phosphoglycerate dehydrogenase, at 36,949 to 38,187
_RS21470
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.036 kb on + strand, within EX31_RS21460 at 35.036 kb on + strand, within EX31_RS21460 at 35.037 kb on - strand, within EX31_RS21460 at 35.037 kb on - strand, within EX31_RS21460 at 35.103 kb on - strand, within EX31_RS21460 at 35.174 kb on - strand, within EX31_RS21460 at 35.174 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.269 kb on - strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.436 kb on - strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.511 kb on + strand, within EX31_RS21460 at 35.549 kb on + strand, within EX31_RS21460 at 35.550 kb on - strand, within EX31_RS21460 at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.692 kb on + strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.724 kb on + strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.810 kb on + strand at 35.810 kb on + strand at 35.810 kb on + strand at 35.810 kb on + strand at 35.811 kb on - strand at 35.811 kb on - strand at 35.811 kb on - strand at 35.811 kb on - strand at 35.811 kb on - strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.813 kb on + strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.814 kb on - strand at 35.864 kb on + strand at 35.865 kb on - strand at 35.865 kb on - strand at 35.865 kb on - strand at 35.865 kb on - strand at 35.866 kb on + strand at 35.866 kb on + strand at 35.866 kb on + strand at 35.867 kb on - strand at 35.867 kb on - strand at 35.867 kb on - strand at 35.867 kb on - strand at 35.896 kb on + strand at 35.896 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.909 kb on + strand at 35.910 kb on - strand at 35.910 kb on - strand at 36.170 kb on + strand, within EX31_RS21465 at 36.359 kb on + strand, within EX31_RS21465 at 36.597 kb on - strand at 36.597 kb on - strand at 36.605 kb on + strand at 36.605 kb on + strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.607 kb on + strand at 36.607 kb on + strand at 36.607 kb on + strand at 36.608 kb on - strand at 36.608 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.694 kb on - strand at 36.694 kb on - strand at 36.731 kb on - strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.744 kb on - strand at 36.744 kb on - strand at 36.744 kb on - strand at 36.886 kb on + strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.935 kb on + strand at 36.936 kb on - strand at 36.936 kb on - strand at 36.937 kb on + strand at 36.938 kb on - strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.024 kb on - strand at 37.024 kb on - strand at 37.042 kb on + strand at 37.042 kb on + strand at 37.073 kb on + strand, within EX31_RS21470 at 37.073 kb on + strand, within EX31_RS21470 at 37.134 kb on + strand, within EX31_RS21470 at 37.242 kb on + strand, within EX31_RS21470 at 37.437 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.487 kb on - strand, within EX31_RS21470 at 37.487 kb on - strand, within EX31_RS21470 at 37.555 kb on - strand, within EX31_RS21470
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 35,036 + EX31_RS21460 0.25 +1.7 35,036 + EX31_RS21460 0.25 +0.4 35,037 - EX31_RS21460 0.26 -0.6 35,037 - EX31_RS21460 0.26 +0.2 35,103 - EX31_RS21460 0.33 -1.2 35,174 - EX31_RS21460 0.41 -0.3 35,174 - EX31_RS21460 0.41 -0.4 35,210 - EX31_RS21460 0.45 +0.3 35,210 - EX31_RS21460 0.45 -0.6 35,210 - EX31_RS21460 0.45 +0.5 35,264 + EX31_RS21460 0.51 -0.6 35,264 + EX31_RS21460 0.51 +1.4 35,264 + EX31_RS21460 0.51 +1.0 35,265 - EX31_RS21460 0.51 +1.4 35,265 - EX31_RS21460 0.51 +0.4 35,265 - EX31_RS21460 0.51 -0.2 35,265 - EX31_RS21460 0.51 +0.3 35,269 - EX31_RS21460 0.51 -0.7 35,435 + EX31_RS21460 0.70 +1.2 35,435 + EX31_RS21460 0.70 -1.6 35,435 + EX31_RS21460 0.70 -0.8 35,435 + EX31_RS21460 0.70 -0.3 35,436 - EX31_RS21460 0.70 -1.0 35,499 + EX31_RS21460 0.77 +0.3 35,499 + EX31_RS21460 0.77 -1.3 35,499 + EX31_RS21460 0.77 +0.8 35,499 + EX31_RS21460 0.77 -1.8 35,499 + EX31_RS21460 0.77 +0.5 35,499 + EX31_RS21460 0.77 +0.8 35,499 + EX31_RS21460 0.77 -0.5 35,499 + EX31_RS21460 0.77 +0.5 35,499 + EX31_RS21460 0.77 -0.7 35,500 - EX31_RS21460 0.77 +0.4 35,500 - EX31_RS21460 0.77 -0.2 35,500 - EX31_RS21460 0.77 -0.4 35,500 - EX31_RS21460 0.77 +0.4 35,500 - EX31_RS21460 0.77 +0.4 35,500 - EX31_RS21460 0.77 +0.3 35,511 + EX31_RS21460 0.78 -1.3 35,549 + EX31_RS21460 0.82 -2.0 35,550 - EX31_RS21460 0.82 -1.3 35,690 + -0.4 35,690 + +1.2 35,690 + +0.5 35,690 + -1.0 35,690 + -1.0 35,690 + -0.6 35,690 + -1.2 35,690 + +0.0 35,690 + -0.3 35,690 + +1.3 35,691 - -1.9 35,691 - -0.3 35,691 - -0.4 35,691 - +0.0 35,691 - +0.4 35,691 - -0.6 35,691 - +2.2 35,691 - +0.0 35,692 + +0.4 35,693 - +0.1 35,693 - -0.4 35,693 - -2.2 35,693 - +0.7 35,693 - +0.7 35,724 + +1.2 35,725 - +1.2 35,725 - +0.8 35,725 - +0.1 35,725 - +0.2 35,725 - +1.0 35,725 - -2.4 35,747 + +0.9 35,747 + -0.3 35,747 + -0.1 35,747 + +0.4 35,747 + +0.2 35,748 - +0.0 35,748 - -0.6 35,748 - +1.0 35,748 - +0.3 35,748 - +0.0 35,810 + -0.2 35,810 + -0.7 35,810 + +0.5 35,810 + -0.4 35,811 - +1.0 35,811 - +1.6 35,811 - -3.0 35,811 - -1.5 35,811 - +0.8 35,813 + +0.3 35,813 + +0.5 35,813 + +0.3 35,813 + -1.6 35,813 + +1.0 35,813 + +1.7 35,813 + -0.5 35,813 + -1.0 35,813 + +1.5 35,813 + +1.0 35,813 + +0.3 35,813 + +0.8 35,813 + +0.3 35,813 + +1.7 35,813 + +0.5 35,813 + +0.0 35,814 - +0.8 35,814 - -0.6 35,814 - +0.0 35,814 - +0.0 35,814 - -1.0 35,814 - -0.3 35,814 - +0.5 35,814 - -0.2 35,814 - -0.5 35,864 + +1.0 35,865 - -1.3 35,865 - -1.3 35,865 - +0.1 35,865 - -2.2 35,866 + +0.1 35,866 + +0.7 35,866 + -1.0 35,867 - -1.2 35,867 - -2.4 35,867 - -2.2 35,867 - -1.6 35,896 + +0.5 35,896 + +0.9 35,909 + -0.4 35,909 + -0.7 35,909 + +0.1 35,909 + -1.0 35,909 + -0.1 35,909 + +0.2 35,909 + -0.2 35,909 + +0.3 35,909 + -0.8 35,909 + +0.1 35,910 - -0.6 35,910 - +2.0 36,170 + EX31_RS21465 0.35 +0.0 36,359 + EX31_RS21465 0.64 -0.6 36,597 - -1.0 36,597 - -1.6 36,605 + +0.4 36,605 + +0.7 36,606 - +2.1 36,606 - +1.3 36,606 - -0.6 36,606 - -1.2 36,607 + -0.7 36,607 + -0.2 36,607 + -0.3 36,608 - +0.3 36,608 - +1.5 36,683 - -0.6 36,683 - +0.1 36,683 - +0.0 36,694 - -0.8 36,694 - -0.3 36,731 - +0.3 36,743 + +0.3 36,743 + +0.0 36,743 + +0.7 36,743 + -1.0 36,743 + -1.4 36,743 + -1.6 36,743 + +0.4 36,743 + -1.6 36,743 + +0.4 36,744 - +2.3 36,744 - +0.7 36,744 - -1.8 36,886 + +1.0 36,887 - +1.0 36,887 - +0.4 36,935 + -0.2 36,936 - +2.6 36,936 - +0.3 36,937 + -0.6 36,938 - -1.8 37,023 + +0.8 37,023 + +1.1 37,023 + +0.0 37,023 + -1.2 37,024 - +1.0 37,024 - +2.3 37,042 + +1.4 37,042 + +0.2 37,073 + EX31_RS21470 0.10 +0.1 37,073 + EX31_RS21470 0.10 +0.0 37,134 + EX31_RS21470 0.15 +0.0 37,242 + EX31_RS21470 0.24 +0.8 37,437 + EX31_RS21470 0.39 +1.0 37,483 + EX31_RS21470 0.43 +0.0 37,483 + EX31_RS21470 0.43 +1.2 37,483 + EX31_RS21470 0.43 -0.6 37,483 + EX31_RS21470 0.43 +1.0 37,483 + EX31_RS21470 0.43 -0.6 37,483 + EX31_RS21470 0.43 +0.9 37,484 - EX31_RS21470 0.43 +2.0 37,484 - EX31_RS21470 0.43 -0.6 37,484 - EX31_RS21470 0.43 +1.0 37,484 - EX31_RS21470 0.43 +0.2 37,484 - EX31_RS21470 0.43 -0.8 37,484 - EX31_RS21470 0.43 +2.0 37,484 - EX31_RS21470 0.43 -1.0 37,484 - EX31_RS21470 0.43 -1.6 37,486 + EX31_RS21470 0.43 -0.1 37,486 + EX31_RS21470 0.43 +0.2 37,486 + EX31_RS21470 0.43 -0.6 37,486 + EX31_RS21470 0.43 -0.4 37,486 + EX31_RS21470 0.43 +0.1 37,487 - EX31_RS21470 0.43 +0.0 37,487 - EX31_RS21470 0.43 +0.1 37,555 - EX31_RS21470 0.49 +0.0
Or see this region's nucleotide sequence