Strain Fitness in Rahnella sp. WP5 around EX31_RS19845

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19840 and EX31_RS19845 are separated by 44 nucleotidesEX31_RS19845 and EX31_RS19850 are separated by 10 nucleotidesEX31_RS19850 and EX31_RS19855 are separated by 105 nucleotides EX31_RS19840: EX31_RS19840 - hypothetical protein, at 599,814 to 600,818 _RS19840 EX31_RS19845: EX31_RS19845 - DNA polymerase II small subunit, at 600,863 to 601,063 _RS19845 EX31_RS19850: EX31_RS19850 - LysR family transcriptional regulator, at 601,074 to 601,955 _RS19850 EX31_RS19855: EX31_RS19855 - carboxymuconolactone decarboxylase family protein, at 602,061 to 602,384 _RS19855 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 599.872 kb on - strandat 599.918 kb on + strand, within EX31_RS19840at 599.918 kb on + strand, within EX31_RS19840at 599.919 kb on - strand, within EX31_RS19840at 599.925 kb on + strand, within EX31_RS19840at 599.926 kb on - strand, within EX31_RS19840at 599.926 kb on - strand, within EX31_RS19840at 599.946 kb on - strand, within EX31_RS19840at 599.946 kb on - strand, within EX31_RS19840at 600.012 kb on - strand, within EX31_RS19840at 600.054 kb on - strand, within EX31_RS19840at 600.060 kb on + strand, within EX31_RS19840at 600.061 kb on - strand, within EX31_RS19840at 600.085 kb on + strand, within EX31_RS19840at 600.085 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.143 kb on + strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.144 kb on - strand, within EX31_RS19840at 600.149 kb on + strand, within EX31_RS19840at 600.169 kb on + strand, within EX31_RS19840at 600.169 kb on + strand, within EX31_RS19840at 600.221 kb on + strand, within EX31_RS19840at 600.221 kb on + strand, within EX31_RS19840at 600.222 kb on - strand, within EX31_RS19840at 600.222 kb on - strand, within EX31_RS19840at 600.222 kb on - strand, within EX31_RS19840at 600.267 kb on + strand, within EX31_RS19840at 600.267 kb on + strand, within EX31_RS19840at 600.267 kb on + strand, within EX31_RS19840at 600.267 kb on + strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.268 kb on - strand, within EX31_RS19840at 600.300 kb on - strand, within EX31_RS19840at 600.332 kb on + strand, within EX31_RS19840at 600.332 kb on + strand, within EX31_RS19840at 600.333 kb on - strand, within EX31_RS19840at 600.333 kb on - strand, within EX31_RS19840at 600.333 kb on - strand, within EX31_RS19840at 600.357 kb on + strand, within EX31_RS19840at 600.357 kb on + strand, within EX31_RS19840at 600.357 kb on + strand, within EX31_RS19840at 600.357 kb on + strand, within EX31_RS19840at 600.358 kb on - strand, within EX31_RS19840at 600.358 kb on - strand, within EX31_RS19840at 600.412 kb on + strand, within EX31_RS19840at 600.444 kb on + strand, within EX31_RS19840at 600.444 kb on + strand, within EX31_RS19840at 600.445 kb on - strand, within EX31_RS19840at 600.445 kb on - strand, within EX31_RS19840at 600.491 kb on + strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.492 kb on - strand, within EX31_RS19840at 600.510 kb on + strand, within EX31_RS19840at 600.614 kb on + strand, within EX31_RS19840at 600.614 kb on + strand, within EX31_RS19840at 600.615 kb on - strand, within EX31_RS19840at 600.618 kb on - strand, within EX31_RS19840at 600.635 kb on + strand, within EX31_RS19840at 600.636 kb on - strand, within EX31_RS19840at 600.647 kb on - strand, within EX31_RS19840at 600.663 kb on + strand, within EX31_RS19840at 600.663 kb on + strand, within EX31_RS19840at 600.664 kb on - strand, within EX31_RS19840at 600.683 kb on + strand, within EX31_RS19840at 600.683 kb on + strand, within EX31_RS19840at 600.768 kb on + strandat 600.768 kb on + strandat 600.768 kb on + strandat 600.768 kb on + strandat 600.768 kb on + strandat 600.769 kb on - strandat 600.769 kb on - strandat 600.769 kb on - strandat 600.787 kb on + strandat 600.816 kb on + strandat 600.816 kb on + strandat 600.817 kb on - strandat 600.837 kb on + strandat 600.837 kb on + strandat 600.837 kb on + strandat 600.838 kb on - strandat 600.838 kb on - strandat 600.889 kb on + strand, within EX31_RS19845at 600.904 kb on + strand, within EX31_RS19845at 600.905 kb on - strand, within EX31_RS19845at 601.038 kb on - strand, within EX31_RS19845at 601.088 kb on + strandat 601.089 kb on - strandat 601.300 kb on - strand, within EX31_RS19850at 601.527 kb on - strand, within EX31_RS19850at 601.565 kb on + strand, within EX31_RS19850at 601.565 kb on + strand, within EX31_RS19850at 601.566 kb on - strand, within EX31_RS19850at 601.566 kb on - strand, within EX31_RS19850at 601.566 kb on - strand, within EX31_RS19850at 601.735 kb on + strand, within EX31_RS19850at 601.736 kb on - strand, within EX31_RS19850at 601.792 kb on - strand, within EX31_RS19850at 601.792 kb on - strand, within EX31_RS19850at 602.025 kb on + strandat 602.025 kb on + strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.026 kb on - strandat 602.061 kb on - strandat 602.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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599,872 - -0.6
599,918 + EX31_RS19840 0.10 -1.0
599,918 + EX31_RS19840 0.10 -1.3
599,919 - EX31_RS19840 0.10 +0.0
599,925 + EX31_RS19840 0.11 +0.6
599,926 - EX31_RS19840 0.11 -0.2
599,926 - EX31_RS19840 0.11 +0.6
599,946 - EX31_RS19840 0.13 +1.5
599,946 - EX31_RS19840 0.13 +0.0
600,012 - EX31_RS19840 0.20 -1.1
600,054 - EX31_RS19840 0.24 -0.8
600,060 + EX31_RS19840 0.24 +0.2
600,061 - EX31_RS19840 0.25 +0.6
600,085 + EX31_RS19840 0.27 +1.0
600,085 + EX31_RS19840 0.27 -0.3
600,143 + EX31_RS19840 0.33 -0.6
600,143 + EX31_RS19840 0.33 +0.0
600,143 + EX31_RS19840 0.33 -0.7
600,143 + EX31_RS19840 0.33 +0.0
600,143 + EX31_RS19840 0.33 +0.2
600,143 + EX31_RS19840 0.33 +0.4
600,143 + EX31_RS19840 0.33 -1.0
600,144 - EX31_RS19840 0.33 -0.1
600,144 - EX31_RS19840 0.33 +1.6
600,144 - EX31_RS19840 0.33 -0.6
600,144 - EX31_RS19840 0.33 +0.6
600,144 - EX31_RS19840 0.33 +0.3
600,144 - EX31_RS19840 0.33 +1.3
600,149 + EX31_RS19840 0.33 +0.3
600,169 + EX31_RS19840 0.35 +0.8
600,169 + EX31_RS19840 0.35 +0.2
600,221 + EX31_RS19840 0.40 +0.4
600,221 + EX31_RS19840 0.40 -1.6
600,222 - EX31_RS19840 0.41 +1.3
600,222 - EX31_RS19840 0.41 -0.9
600,222 - EX31_RS19840 0.41 -0.1
600,267 + EX31_RS19840 0.45 +1.8
600,267 + EX31_RS19840 0.45 -2.6
600,267 + EX31_RS19840 0.45 +0.7
600,267 + EX31_RS19840 0.45 +0.2
600,268 - EX31_RS19840 0.45 +0.2
600,268 - EX31_RS19840 0.45 -0.3
600,268 - EX31_RS19840 0.45 +1.0
600,268 - EX31_RS19840 0.45 +1.5
600,268 - EX31_RS19840 0.45 +1.0
600,268 - EX31_RS19840 0.45 +1.2
600,300 - EX31_RS19840 0.48 +1.0
600,332 + EX31_RS19840 0.52 +0.0
600,332 + EX31_RS19840 0.52 +1.4
600,333 - EX31_RS19840 0.52 -0.3
600,333 - EX31_RS19840 0.52 +1.3
600,333 - EX31_RS19840 0.52 -1.8
600,357 + EX31_RS19840 0.54 +1.3
600,357 + EX31_RS19840 0.54 -1.3
600,357 + EX31_RS19840 0.54 +0.0
600,357 + EX31_RS19840 0.54 +2.0
600,358 - EX31_RS19840 0.54 -0.7
600,358 - EX31_RS19840 0.54 +0.8
600,412 + EX31_RS19840 0.60 +1.8
600,444 + EX31_RS19840 0.63 +0.1
600,444 + EX31_RS19840 0.63 +1.0
600,445 - EX31_RS19840 0.63 +1.0
600,445 - EX31_RS19840 0.63 +0.3
600,491 + EX31_RS19840 0.67 +1.0
600,492 - EX31_RS19840 0.67 -0.1
600,492 - EX31_RS19840 0.67 -1.0
600,492 - EX31_RS19840 0.67 +1.1
600,492 - EX31_RS19840 0.67 +1.0
600,492 - EX31_RS19840 0.67 +0.8
600,492 - EX31_RS19840 0.67 -0.9
600,492 - EX31_RS19840 0.67 -1.6
600,510 + EX31_RS19840 0.69 +1.9
600,614 + EX31_RS19840 0.80 -1.0
600,614 + EX31_RS19840 0.80 +1.0
600,615 - EX31_RS19840 0.80 +0.0
600,618 - EX31_RS19840 0.80 -0.6
600,635 + EX31_RS19840 0.82 +1.7
600,636 - EX31_RS19840 0.82 +1.9
600,647 - EX31_RS19840 0.83 +0.6
600,663 + EX31_RS19840 0.84 +0.6
600,663 + EX31_RS19840 0.84 +0.0
600,664 - EX31_RS19840 0.85 -0.6
600,683 + EX31_RS19840 0.86 +1.6
600,683 + EX31_RS19840 0.86 -0.3
600,768 + +0.5
600,768 + +0.9
600,768 + +1.0
600,768 + -1.5
600,768 + +0.7
600,769 - -0.3
600,769 - -0.1
600,769 - +0.6
600,787 + -0.6
600,816 + +1.2
600,816 + +0.0
600,817 - +0.0
600,837 + +0.4
600,837 + +0.3
600,837 + -3.0
600,838 - +0.4
600,838 - +1.0
600,889 + EX31_RS19845 0.13 +1.6
600,904 + EX31_RS19845 0.20 +2.3
600,905 - EX31_RS19845 0.21 +0.0
601,038 - EX31_RS19845 0.87 +0.8
601,088 + -1.6
601,089 - -0.5
601,300 - EX31_RS19850 0.26 -0.3
601,527 - EX31_RS19850 0.51 -2.6
601,565 + EX31_RS19850 0.56 -0.1
601,565 + EX31_RS19850 0.56 +2.6
601,566 - EX31_RS19850 0.56 -1.0
601,566 - EX31_RS19850 0.56 -0.3
601,566 - EX31_RS19850 0.56 +0.2
601,735 + EX31_RS19850 0.75 -1.3
601,736 - EX31_RS19850 0.75 +0.0
601,792 - EX31_RS19850 0.81 +0.2
601,792 - EX31_RS19850 0.81 +0.5
602,025 + +0.0
602,025 + +0.4
602,026 - -0.9
602,026 - +0.6
602,026 - -0.0
602,026 - +0.2
602,026 - +0.4
602,026 - +1.0
602,026 - -0.1
602,061 - -0.9
602,061 - +0.4

Or see this region's nucleotide sequence