Strain Fitness in Rahnella sp. WP5 around EX31_RS19755

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19745 and EX31_RS19750 overlap by 4 nucleotidesEX31_RS19750 and EX31_RS19755 overlap by 4 nucleotidesEX31_RS19755 and EX31_RS19760 overlap by 4 nucleotidesEX31_RS19760 and EX31_RS19765 are separated by 217 nucleotides EX31_RS19745: EX31_RS19745 - heme lyase CcmF/NrfE family subunit, at 582,043 to 584,016 _RS19745 EX31_RS19750: EX31_RS19750 - cytochrome c maturation protein CcmE, at 584,013 to 584,507 _RS19750 EX31_RS19755: EX31_RS19755 - heme exporter protein CcmD, at 584,504 to 584,764 _RS19755 EX31_RS19760: EX31_RS19760 - heme ABC transporter permease, at 584,761 to 585,498 _RS19760 EX31_RS19765: EX31_RS19765 - heme exporter protein CcmB, at 585,716 to 586,375 _RS19765 Position (kb) 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 583.504 kb on + strand, within EX31_RS19745at 583.505 kb on - strand, within EX31_RS19745at 583.522 kb on + strand, within EX31_RS19745at 583.592 kb on - strand, within EX31_RS19745at 583.668 kb on + strand, within EX31_RS19745at 583.669 kb on - strand, within EX31_RS19745at 583.712 kb on - strand, within EX31_RS19745at 583.712 kb on - strand, within EX31_RS19745at 583.712 kb on - strand, within EX31_RS19745at 583.714 kb on + strand, within EX31_RS19745at 583.715 kb on - strand, within EX31_RS19745at 583.715 kb on - strand, within EX31_RS19745at 583.769 kb on + strand, within EX31_RS19745at 583.772 kb on + strand, within EX31_RS19745at 583.772 kb on + strand, within EX31_RS19745at 583.773 kb on - strand, within EX31_RS19745at 583.798 kb on - strand, within EX31_RS19745at 583.800 kb on + strand, within EX31_RS19745at 583.801 kb on - strand, within EX31_RS19745at 583.809 kb on - strand, within EX31_RS19745at 583.887 kb on - strandat 583.953 kb on + strandat 583.954 kb on - strandat 583.975 kb on + strandat 584.034 kb on - strandat 584.048 kb on - strandat 584.224 kb on + strand, within EX31_RS19750at 584.225 kb on - strand, within EX31_RS19750at 584.225 kb on - strand, within EX31_RS19750at 584.225 kb on - strand, within EX31_RS19750at 584.261 kb on + strand, within EX31_RS19750at 584.369 kb on + strand, within EX31_RS19750at 584.369 kb on + strand, within EX31_RS19750at 584.369 kb on + strand, within EX31_RS19750at 584.369 kb on + strand, within EX31_RS19750at 584.370 kb on - strand, within EX31_RS19750at 584.394 kb on - strand, within EX31_RS19750at 584.394 kb on - strand, within EX31_RS19750at 584.394 kb on - strand, within EX31_RS19750at 584.395 kb on + strand, within EX31_RS19750at 584.395 kb on + strand, within EX31_RS19750at 584.396 kb on - strand, within EX31_RS19750at 584.396 kb on - strand, within EX31_RS19750at 584.396 kb on - strand, within EX31_RS19750at 584.396 kb on - strand, within EX31_RS19750at 584.425 kb on + strand, within EX31_RS19750at 584.425 kb on + strand, within EX31_RS19750at 584.425 kb on + strand, within EX31_RS19750at 584.425 kb on + strand, within EX31_RS19750at 584.426 kb on - strand, within EX31_RS19750at 584.426 kb on - strand, within EX31_RS19750at 584.426 kb on - strand, within EX31_RS19750at 584.426 kb on - strand, within EX31_RS19750at 584.426 kb on - strand, within EX31_RS19750at 584.492 kb on + strandat 584.510 kb on + strandat 584.511 kb on - strandat 584.651 kb on - strand, within EX31_RS19755at 584.706 kb on + strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.707 kb on - strand, within EX31_RS19755at 584.779 kb on - strandat 584.857 kb on - strand, within EX31_RS19760at 584.859 kb on + strand, within EX31_RS19760at 584.860 kb on - strand, within EX31_RS19760at 584.860 kb on - strand, within EX31_RS19760at 584.932 kb on - strand, within EX31_RS19760at 584.975 kb on + strand, within EX31_RS19760at 584.986 kb on - strand, within EX31_RS19760at 584.986 kb on - strand, within EX31_RS19760at 584.992 kb on - strand, within EX31_RS19760at 584.992 kb on - strand, within EX31_RS19760at 584.992 kb on - strand, within EX31_RS19760at 585.063 kb on - strand, within EX31_RS19760at 585.063 kb on - strand, within EX31_RS19760at 585.071 kb on - strand, within EX31_RS19760at 585.083 kb on + strand, within EX31_RS19760at 585.095 kb on - strand, within EX31_RS19760at 585.324 kb on + strand, within EX31_RS19760at 585.324 kb on + strand, within EX31_RS19760at 585.324 kb on + strand, within EX31_RS19760at 585.324 kb on + strand, within EX31_RS19760at 585.324 kb on + strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.325 kb on - strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.326 kb on + strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.327 kb on - strand, within EX31_RS19760at 585.330 kb on + strand, within EX31_RS19760at 585.330 kb on + strand, within EX31_RS19760at 585.330 kb on + strand, within EX31_RS19760at 585.331 kb on - strand, within EX31_RS19760at 585.331 kb on - strand, within EX31_RS19760at 585.331 kb on - strand, within EX31_RS19760at 585.331 kb on - strand, within EX31_RS19760at 585.331 kb on - strand, within EX31_RS19760at 585.345 kb on + strand, within EX31_RS19760at 585.345 kb on + strand, within EX31_RS19760at 585.346 kb on - strand, within EX31_RS19760at 585.346 kb on - strand, within EX31_RS19760at 585.456 kb on - strandat 585.485 kb on - strandat 585.485 kb on - strandat 585.485 kb on - strandat 585.517 kb on + strandat 585.535 kb on + strandat 585.535 kb on + strandat 585.536 kb on - strandat 585.536 kb on - strandat 585.575 kb on + strandat 585.576 kb on - strandat 585.576 kb on - strandat 585.590 kb on + strandat 585.590 kb on + strandat 585.590 kb on + strandat 585.591 kb on - strandat 585.591 kb on - strandat 585.594 kb on - strandat 585.605 kb on + strandat 585.605 kb on + strandat 585.605 kb on + strandat 585.606 kb on - strandat 585.606 kb on - strandat 585.606 kb on - strandat 585.606 kb on - strandat 585.606 kb on - strandat 585.616 kb on - strandat 585.617 kb on + strandat 585.617 kb on + strandat 585.618 kb on - strandat 585.618 kb on - strandat 585.618 kb on - strandat 585.634 kb on - strandat 585.660 kb on + strandat 585.666 kb on - strandat 585.701 kb on + strandat 585.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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583,504 + EX31_RS19745 0.74 -1.6
583,505 - EX31_RS19745 0.74 +0.5
583,522 + EX31_RS19745 0.75 +0.4
583,592 - EX31_RS19745 0.78 -1.5
583,668 + EX31_RS19745 0.82 +0.6
583,669 - EX31_RS19745 0.82 +3.0
583,712 - EX31_RS19745 0.85 +1.8
583,712 - EX31_RS19745 0.85 +0.5
583,712 - EX31_RS19745 0.85 -0.5
583,714 + EX31_RS19745 0.85 +1.6
583,715 - EX31_RS19745 0.85 +0.3
583,715 - EX31_RS19745 0.85 -0.0
583,769 + EX31_RS19745 0.87 -2.7
583,772 + EX31_RS19745 0.88 -1.5
583,772 + EX31_RS19745 0.88 -0.1
583,773 - EX31_RS19745 0.88 +3.3
583,798 - EX31_RS19745 0.89 -2.2
583,800 + EX31_RS19745 0.89 -0.0
583,801 - EX31_RS19745 0.89 -0.0
583,809 - EX31_RS19745 0.89 -0.2
583,887 - +0.6
583,953 + +1.6
583,954 - -0.6
583,975 + -0.4
584,034 - -0.3
584,048 - -0.0
584,224 + EX31_RS19750 0.43 +0.3
584,225 - EX31_RS19750 0.43 +0.9
584,225 - EX31_RS19750 0.43 +0.5
584,225 - EX31_RS19750 0.43 -0.0
584,261 + EX31_RS19750 0.50 +0.4
584,369 + EX31_RS19750 0.72 +2.2
584,369 + EX31_RS19750 0.72 -1.3
584,369 + EX31_RS19750 0.72 +0.4
584,369 + EX31_RS19750 0.72 +0.1
584,370 - EX31_RS19750 0.72 -0.6
584,394 - EX31_RS19750 0.77 +1.3
584,394 - EX31_RS19750 0.77 +0.1
584,394 - EX31_RS19750 0.77 +0.9
584,395 + EX31_RS19750 0.77 +0.7
584,395 + EX31_RS19750 0.77 -0.6
584,396 - EX31_RS19750 0.77 -0.4
584,396 - EX31_RS19750 0.77 +0.4
584,396 - EX31_RS19750 0.77 -0.4
584,396 - EX31_RS19750 0.77 -0.9
584,425 + EX31_RS19750 0.83 -0.0
584,425 + EX31_RS19750 0.83 -0.6
584,425 + EX31_RS19750 0.83 +0.6
584,425 + EX31_RS19750 0.83 +0.2
584,426 - EX31_RS19750 0.83 +1.3
584,426 - EX31_RS19750 0.83 -0.2
584,426 - EX31_RS19750 0.83 +1.2
584,426 - EX31_RS19750 0.83 +1.0
584,426 - EX31_RS19750 0.83 +0.3
584,492 + +0.1
584,510 + -0.0
584,511 - +1.0
584,651 - EX31_RS19755 0.56 +1.7
584,706 + EX31_RS19755 0.77 -0.6
584,707 - EX31_RS19755 0.78 +0.8
584,707 - EX31_RS19755 0.78 +1.2
584,707 - EX31_RS19755 0.78 -0.6
584,707 - EX31_RS19755 0.78 +0.3
584,707 - EX31_RS19755 0.78 +0.6
584,707 - EX31_RS19755 0.78 +1.0
584,707 - EX31_RS19755 0.78 -0.0
584,707 - EX31_RS19755 0.78 -0.4
584,779 - -0.0
584,857 - EX31_RS19760 0.13 -1.8
584,859 + EX31_RS19760 0.13 +0.7
584,860 - EX31_RS19760 0.13 +1.2
584,860 - EX31_RS19760 0.13 -0.0
584,932 - EX31_RS19760 0.23 +2.0
584,975 + EX31_RS19760 0.29 -1.1
584,986 - EX31_RS19760 0.30 -0.2
584,986 - EX31_RS19760 0.30 -0.2
584,992 - EX31_RS19760 0.31 -0.5
584,992 - EX31_RS19760 0.31 -0.0
584,992 - EX31_RS19760 0.31 +0.8
585,063 - EX31_RS19760 0.41 -0.3
585,063 - EX31_RS19760 0.41 -0.4
585,071 - EX31_RS19760 0.42 -0.0
585,083 + EX31_RS19760 0.44 +0.8
585,095 - EX31_RS19760 0.45 -1.0
585,324 + EX31_RS19760 0.76 +0.7
585,324 + EX31_RS19760 0.76 +0.4
585,324 + EX31_RS19760 0.76 -0.6
585,324 + EX31_RS19760 0.76 +1.0
585,324 + EX31_RS19760 0.76 +1.4
585,325 - EX31_RS19760 0.76 -0.0
585,325 - EX31_RS19760 0.76 -1.2
585,325 - EX31_RS19760 0.76 -0.6
585,325 - EX31_RS19760 0.76 -0.3
585,325 - EX31_RS19760 0.76 -1.6
585,325 - EX31_RS19760 0.76 +0.5
585,325 - EX31_RS19760 0.76 -0.5
585,325 - EX31_RS19760 0.76 +0.1
585,325 - EX31_RS19760 0.76 -0.9
585,325 - EX31_RS19760 0.76 +0.3
585,326 + EX31_RS19760 0.77 +0.1
585,326 + EX31_RS19760 0.77 +0.4
585,326 + EX31_RS19760 0.77 -2.0
585,326 + EX31_RS19760 0.77 +1.5
585,326 + EX31_RS19760 0.77 -0.6
585,326 + EX31_RS19760 0.77 +0.2
585,326 + EX31_RS19760 0.77 +0.6
585,326 + EX31_RS19760 0.77 +1.6
585,326 + EX31_RS19760 0.77 +1.7
585,326 + EX31_RS19760 0.77 +0.4
585,326 + EX31_RS19760 0.77 +1.0
585,326 + EX31_RS19760 0.77 -0.7
585,326 + EX31_RS19760 0.77 +2.6
585,326 + EX31_RS19760 0.77 +1.5
585,326 + EX31_RS19760 0.77 +0.2
585,326 + EX31_RS19760 0.77 -0.0
585,327 - EX31_RS19760 0.77 -0.1
585,327 - EX31_RS19760 0.77 +0.1
585,327 - EX31_RS19760 0.77 -1.7
585,327 - EX31_RS19760 0.77 -2.8
585,327 - EX31_RS19760 0.77 +0.8
585,327 - EX31_RS19760 0.77 -0.7
585,327 - EX31_RS19760 0.77 -0.6
585,327 - EX31_RS19760 0.77 +0.6
585,327 - EX31_RS19760 0.77 -0.3
585,327 - EX31_RS19760 0.77 +0.2
585,327 - EX31_RS19760 0.77 +0.3
585,327 - EX31_RS19760 0.77 +0.4
585,327 - EX31_RS19760 0.77 +1.1
585,327 - EX31_RS19760 0.77 -0.0
585,327 - EX31_RS19760 0.77 -1.6
585,327 - EX31_RS19760 0.77 -0.1
585,327 - EX31_RS19760 0.77 +0.3
585,327 - EX31_RS19760 0.77 -1.2
585,327 - EX31_RS19760 0.77 +0.7
585,330 + EX31_RS19760 0.77 +1.4
585,330 + EX31_RS19760 0.77 -0.6
585,330 + EX31_RS19760 0.77 -2.2
585,331 - EX31_RS19760 0.77 +0.7
585,331 - EX31_RS19760 0.77 -1.0
585,331 - EX31_RS19760 0.77 +1.2
585,331 - EX31_RS19760 0.77 +0.8
585,331 - EX31_RS19760 0.77 +1.0
585,345 + EX31_RS19760 0.79 -0.1
585,345 + EX31_RS19760 0.79 +1.0
585,346 - EX31_RS19760 0.79 -0.8
585,346 - EX31_RS19760 0.79 +0.0
585,456 - -0.2
585,485 - -0.7
585,485 - -0.2
585,485 - -0.3
585,517 + +1.7
585,535 + +1.0
585,535 + +1.1
585,536 - +2.0
585,536 - +0.5
585,575 + -0.6
585,576 - +0.3
585,576 - +1.2
585,590 + +0.4
585,590 + -0.1
585,590 + -0.7
585,591 - -0.4
585,591 - -0.2
585,594 - +1.6
585,605 + -0.0
585,605 + -1.0
585,605 + -0.0
585,606 - +0.9
585,606 - +0.2
585,606 - -0.7
585,606 - +1.4
585,606 - +0.5
585,616 - +0.5
585,617 + +0.7
585,617 + -1.6
585,618 - +0.1
585,618 - -0.8
585,618 - +0.5
585,634 - +1.0
585,660 + +2.0
585,666 - +0.7
585,701 + +2.0
585,702 - -2.3

Or see this region's nucleotide sequence