Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19675 and EX31_RS19680 are separated by 45 nucleotides EX31_RS19680 and EX31_RS19685 are separated by 8 nucleotides EX31_RS19685 and EX31_RS19690 are separated by 82 nucleotides
EX31_RS19675: EX31_RS19675 - TSUP family transporter, at 567,642 to 568,442
_RS19675
EX31_RS19680: EX31_RS19680 - penicillin-insensitive murein endopeptidase, at 568,488 to 569,339
_RS19680
EX31_RS19685: EX31_RS19685 - chorismate synthase, at 569,348 to 570,433
_RS19685
EX31_RS19690: EX31_RS19690 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 570,516 to 571,448
_RS19690
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 568.401 kb on + strand at 568.479 kb on + strand at 568.479 kb on + strand at 568.489 kb on + strand at 568.490 kb on - strand at 568.718 kb on + strand, within EX31_RS19680 at 568.719 kb on - strand, within EX31_RS19680 at 568.719 kb on - strand, within EX31_RS19680 at 568.719 kb on - strand, within EX31_RS19680 at 568.719 kb on - strand, within EX31_RS19680 at 568.792 kb on - strand, within EX31_RS19680 at 568.794 kb on + strand, within EX31_RS19680 at 568.794 kb on + strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.795 kb on - strand, within EX31_RS19680 at 568.868 kb on + strand, within EX31_RS19680 at 568.868 kb on + strand, within EX31_RS19680 at 568.869 kb on - strand, within EX31_RS19680 at 568.892 kb on + strand, within EX31_RS19680 at 568.893 kb on - strand, within EX31_RS19680 at 568.995 kb on - strand, within EX31_RS19680 at 569.111 kb on - strand, within EX31_RS19680 at 569.133 kb on + strand, within EX31_RS19680 at 569.134 kb on - strand, within EX31_RS19680 at 569.134 kb on - strand, within EX31_RS19680 at 569.140 kb on + strand, within EX31_RS19680 at 569.194 kb on + strand, within EX31_RS19680 at 569.194 kb on + strand, within EX31_RS19680 at 569.344 kb on + strand at 569.345 kb on - strand at 569.349 kb on + strand at 569.350 kb on - strand at 570.513 kb on - strand at 570.513 kb on - strand at 570.513 kb on - strand at 570.513 kb on - strand at 570.513 kb on - strand at 570.513 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.515 kb on - strand at 570.527 kb on - strand at 570.567 kb on - strand at 570.576 kb on - strand at 570.698 kb on - strand, within EX31_RS19690 at 570.821 kb on - strand, within EX31_RS19690 at 570.821 kb on - strand, within EX31_RS19690 at 570.848 kb on - strand, within EX31_RS19690 at 570.909 kb on - strand, within EX31_RS19690 at 571.035 kb on - strand, within EX31_RS19690 at 571.035 kb on - strand, within EX31_RS19690 at 571.136 kb on - strand, within EX31_RS19690 at 571.167 kb on - strand, within EX31_RS19690 at 571.175 kb on - strand, within EX31_RS19690 at 571.175 kb on - strand, within EX31_RS19690 at 571.175 kb on - strand, within EX31_RS19690 at 571.175 kb on - strand, within EX31_RS19690 at 571.263 kb on - strand, within EX31_RS19690 at 571.263 kb on - strand, within EX31_RS19690 at 571.263 kb on - strand, within EX31_RS19690 at 571.352 kb on - strand, within EX31_RS19690 at 571.407 kb on - strand at 571.407 kb on - strand at 571.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 568,401 + -0.2 568,479 + +0.2 568,479 + +1.9 568,489 + -0.3 568,490 - -1.5 568,718 + EX31_RS19680 0.27 +1.4 568,719 - EX31_RS19680 0.27 -1.2 568,719 - EX31_RS19680 0.27 -0.6 568,719 - EX31_RS19680 0.27 +1.3 568,719 - EX31_RS19680 0.27 +0.7 568,792 - EX31_RS19680 0.36 +0.2 568,794 + EX31_RS19680 0.36 +0.3 568,794 + EX31_RS19680 0.36 -0.1 568,795 - EX31_RS19680 0.36 +0.1 568,795 - EX31_RS19680 0.36 +1.0 568,795 - EX31_RS19680 0.36 +1.2 568,795 - EX31_RS19680 0.36 +0.3 568,795 - EX31_RS19680 0.36 +0.3 568,795 - EX31_RS19680 0.36 +0.0 568,868 + EX31_RS19680 0.45 -0.8 568,868 + EX31_RS19680 0.45 +0.4 568,869 - EX31_RS19680 0.45 +1.6 568,892 + EX31_RS19680 0.47 +0.1 568,893 - EX31_RS19680 0.48 +1.5 568,995 - EX31_RS19680 0.60 -1.1 569,111 - EX31_RS19680 0.73 +1.4 569,133 + EX31_RS19680 0.76 +0.1 569,134 - EX31_RS19680 0.76 -1.1 569,134 - EX31_RS19680 0.76 +1.0 569,140 + EX31_RS19680 0.77 +1.0 569,194 + EX31_RS19680 0.83 -0.3 569,194 + EX31_RS19680 0.83 -1.9 569,344 + +0.3 569,345 - +0.2 569,349 + +0.3 569,350 - -0.9 570,513 - -0.3 570,513 - -0.3 570,513 - +0.9 570,513 - -1.7 570,513 - +0.6 570,513 - -1.4 570,515 - -0.1 570,515 - +0.4 570,515 - -0.6 570,515 - -1.2 570,515 - +0.4 570,515 - +1.3 570,515 - +1.0 570,527 - +0.1 570,567 - +0.5 570,576 - +0.6 570,698 - EX31_RS19690 0.20 -0.4 570,821 - EX31_RS19690 0.33 -0.6 570,821 - EX31_RS19690 0.33 +0.0 570,848 - EX31_RS19690 0.36 +0.0 570,909 - EX31_RS19690 0.42 +0.5 571,035 - EX31_RS19690 0.56 +0.0 571,035 - EX31_RS19690 0.56 +1.0 571,136 - EX31_RS19690 0.66 +0.9 571,167 - EX31_RS19690 0.70 +0.0 571,175 - EX31_RS19690 0.71 -1.6 571,175 - EX31_RS19690 0.71 -0.4 571,175 - EX31_RS19690 0.71 +1.4 571,175 - EX31_RS19690 0.71 +0.0 571,263 - EX31_RS19690 0.80 +0.4 571,263 - EX31_RS19690 0.80 +1.0 571,263 - EX31_RS19690 0.80 +0.5 571,352 - EX31_RS19690 0.90 +0.5 571,407 - -0.6 571,407 - +0.2 571,407 - -0.1
Or see this region's nucleotide sequence