Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19470 and EX31_RS19475 are separated by 228 nucleotides EX31_RS19475 and EX31_RS19480 are separated by 88 nucleotides EX31_RS19480 and EX31_RS19485 are separated by 166 nucleotides
EX31_RS19470: EX31_RS19470 - DUF412 domain-containing protein, at 524,390 to 524,845
_RS19470
EX31_RS19475: EX31_RS19475 - hypothetical protein, at 525,074 to 525,277
_RS19475
EX31_RS19480: EX31_RS19480 - acetate kinase, at 525,366 to 526,568
_RS19480
EX31_RS19485: EX31_RS19485 - phosphate acetyltransferase, at 526,735 to 528,894
_RS19485
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 524.372 kb on + strand at 524.373 kb on - strand at 524.391 kb on + strand at 524.391 kb on + strand at 524.392 kb on - strand at 524.392 kb on - strand at 524.392 kb on - strand at 524.392 kb on - strand at 524.392 kb on - strand at 524.392 kb on - strand at 524.461 kb on - strand, within EX31_RS19470 at 524.461 kb on - strand, within EX31_RS19470 at 524.519 kb on + strand, within EX31_RS19470 at 524.519 kb on + strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.520 kb on - strand, within EX31_RS19470 at 524.540 kb on + strand, within EX31_RS19470 at 524.605 kb on + strand, within EX31_RS19470 at 524.606 kb on - strand, within EX31_RS19470 at 524.606 kb on - strand, within EX31_RS19470 at 524.606 kb on - strand, within EX31_RS19470 at 524.716 kb on + strand, within EX31_RS19470 at 524.716 kb on + strand, within EX31_RS19470 at 524.716 kb on + strand, within EX31_RS19470 at 524.723 kb on - strand, within EX31_RS19470 at 524.762 kb on - strand, within EX31_RS19470 at 524.762 kb on - strand, within EX31_RS19470 at 524.762 kb on - strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.782 kb on + strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.783 kb on - strand, within EX31_RS19470 at 524.784 kb on + strand, within EX31_RS19470 at 524.784 kb on + strand, within EX31_RS19470 at 524.784 kb on + strand, within EX31_RS19470 at 524.784 kb on + strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.785 kb on - strand, within EX31_RS19470 at 524.954 kb on + strand at 524.955 kb on - strand at 524.955 kb on - strand at 524.994 kb on + strand at 525.037 kb on + strand at 525.040 kb on + strand at 525.040 kb on + strand at 525.040 kb on + strand at 525.041 kb on - strand at 525.041 kb on - strand at 525.046 kb on + strand at 525.046 kb on + strand at 525.046 kb on + strand at 525.046 kb on + strand at 525.046 kb on + strand at 525.046 kb on + strand at 525.047 kb on - strand at 525.072 kb on - strand at 525.075 kb on + strand at 525.076 kb on - strand at 525.079 kb on + strand at 525.080 kb on - strand at 525.095 kb on - strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.110 kb on + strand, within EX31_RS19475 at 525.111 kb on - strand, within EX31_RS19475 at 525.111 kb on - strand, within EX31_RS19475 at 525.111 kb on - strand, within EX31_RS19475 at 525.111 kb on - strand, within EX31_RS19475 at 525.111 kb on - strand, within EX31_RS19475 at 525.114 kb on - strand, within EX31_RS19475 at 525.114 kb on - strand, within EX31_RS19475 at 525.127 kb on + strand, within EX31_RS19475 at 525.127 kb on + strand, within EX31_RS19475 at 525.127 kb on + strand, within EX31_RS19475 at 525.127 kb on + strand, within EX31_RS19475 at 525.127 kb on + strand, within EX31_RS19475 at 525.128 kb on - strand, within EX31_RS19475 at 525.128 kb on - strand, within EX31_RS19475 at 525.131 kb on + strand, within EX31_RS19475 at 525.131 kb on + strand, within EX31_RS19475 at 525.131 kb on + strand, within EX31_RS19475 at 525.131 kb on + strand, within EX31_RS19475 at 525.131 kb on + strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.132 kb on - strand, within EX31_RS19475 at 525.141 kb on + strand, within EX31_RS19475 at 525.163 kb on + strand, within EX31_RS19475 at 525.164 kb on - strand, within EX31_RS19475 at 525.262 kb on + strand at 525.262 kb on + strand at 525.262 kb on + strand at 525.262 kb on + strand at 525.262 kb on + strand at 525.262 kb on + strand at 525.263 kb on - strand at 525.310 kb on + strand at 525.323 kb on + strand at 525.324 kb on - strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.351 kb on + strand at 525.352 kb on - strand at 525.352 kb on - strand at 525.352 kb on - strand at 525.355 kb on + strand at 525.355 kb on + strand at 525.355 kb on + strand at 525.355 kb on + strand at 525.356 kb on - strand at 525.356 kb on - strand at 525.356 kb on - strand at 525.356 kb on - strand at 525.359 kb on + strand at 525.359 kb on + strand at 525.360 kb on - strand at 525.374 kb on + strand at 525.375 kb on - strand at 525.382 kb on + strand at 525.382 kb on + strand at 525.383 kb on - strand at 525.392 kb on + strand at 525.401 kb on + strand at 525.401 kb on + strand at 525.401 kb on + strand at 525.402 kb on - strand at 525.497 kb on + strand, within EX31_RS19480 at 525.497 kb on + strand, within EX31_RS19480 at 525.498 kb on - strand, within EX31_RS19480 at 525.535 kb on + strand, within EX31_RS19480 at 525.849 kb on + strand, within EX31_RS19480 at 525.849 kb on + strand, within EX31_RS19480 at 525.876 kb on + strand, within EX31_RS19480 at 525.876 kb on + strand, within EX31_RS19480 at 525.877 kb on - strand, within EX31_RS19480 at 525.879 kb on - strand, within EX31_RS19480 at 525.927 kb on + strand, within EX31_RS19480 at 525.927 kb on + strand, within EX31_RS19480 at 525.927 kb on + strand, within EX31_RS19480 at 526.034 kb on + strand, within EX31_RS19480 at 526.034 kb on + strand, within EX31_RS19480 at 526.034 kb on + strand, within EX31_RS19480 at 526.034 kb on + strand, within EX31_RS19480 at 526.046 kb on + strand, within EX31_RS19480 at 526.046 kb on + strand, within EX31_RS19480 at 526.047 kb on - strand, within EX31_RS19480 at 526.118 kb on + strand, within EX31_RS19480 at 526.118 kb on + strand, within EX31_RS19480 at 526.119 kb on - strand, within EX31_RS19480 at 526.179 kb on - strand, within EX31_RS19480 at 526.227 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.242 kb on + strand, within EX31_RS19480 at 526.243 kb on - strand, within EX31_RS19480 at 526.243 kb on - strand, within EX31_RS19480 at 526.243 kb on - strand, within EX31_RS19480 at 526.243 kb on - strand, within EX31_RS19480 at 526.302 kb on + strand, within EX31_RS19480 at 526.302 kb on + strand, within EX31_RS19480 at 526.303 kb on - strand, within EX31_RS19480 at 526.351 kb on + strand, within EX31_RS19480 at 526.411 kb on + strand, within EX31_RS19480 at 526.411 kb on + strand, within EX31_RS19480 at 526.411 kb on + strand, within EX31_RS19480 at 526.411 kb on + strand, within EX31_RS19480 at 526.445 kb on + strand, within EX31_RS19480 at 526.466 kb on + strand at 526.566 kb on + strand at 526.567 kb on - strand at 526.611 kb on + strand at 526.611 kb on + strand at 526.611 kb on + strand at 526.611 kb on + strand at 526.611 kb on + strand at 526.611 kb on + strand at 526.613 kb on + strand at 526.613 kb on + strand at 526.614 kb on - strand at 526.614 kb on - strand at 526.663 kb on + strand at 526.663 kb on + strand at 526.663 kb on + strand at 526.743 kb on + strand at 526.744 kb on - strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.749 kb on + strand at 526.750 kb on - strand at 526.750 kb on - strand at 526.750 kb on - strand at 526.750 kb on - strand at 526.750 kb on - strand at 526.750 kb on - strand at 526.839 kb on + strand at 526.839 kb on + strand at 526.902 kb on + strand at 526.903 kb on - strand at 527.060 kb on + strand, within EX31_RS19485 at 527.185 kb on - strand, within EX31_RS19485 at 527.247 kb on + strand, within EX31_RS19485 at 527.283 kb on + strand, within EX31_RS19485 at 527.283 kb on + strand, within EX31_RS19485 at 527.283 kb on + strand, within EX31_RS19485 at 527.283 kb on + strand, within EX31_RS19485 at 527.283 kb on + strand, within EX31_RS19485 at 527.284 kb on - strand, within EX31_RS19485 at 527.341 kb on - strand, within EX31_RS19485 at 527.457 kb on + strand, within EX31_RS19485 at 527.457 kb on + strand, within EX31_RS19485 at 527.458 kb on - strand, within EX31_RS19485 at 527.458 kb on - strand, within EX31_RS19485 at 527.529 kb on + strand, within EX31_RS19485 at 527.529 kb on + strand, within EX31_RS19485
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 524,372 + +0.6 524,373 - -1.0 524,391 + -0.7 524,391 + -0.0 524,392 - +0.0 524,392 - -0.2 524,392 - -0.4 524,392 - -0.7 524,392 - -0.1 524,392 - -0.0 524,461 - EX31_RS19470 0.16 +0.5 524,461 - EX31_RS19470 0.16 -0.0 524,519 + EX31_RS19470 0.28 -1.7 524,519 + EX31_RS19470 0.28 -0.3 524,520 - EX31_RS19470 0.29 +0.3 524,520 - EX31_RS19470 0.29 -0.3 524,520 - EX31_RS19470 0.29 +0.6 524,520 - EX31_RS19470 0.29 -0.8 524,520 - EX31_RS19470 0.29 +0.1 524,520 - EX31_RS19470 0.29 -0.2 524,540 + EX31_RS19470 0.33 +1.5 524,605 + EX31_RS19470 0.47 -0.6 524,606 - EX31_RS19470 0.47 -0.6 524,606 - EX31_RS19470 0.47 -1.4 524,606 - EX31_RS19470 0.47 +0.6 524,716 + EX31_RS19470 0.71 +0.1 524,716 + EX31_RS19470 0.71 +0.5 524,716 + EX31_RS19470 0.71 -0.6 524,723 - EX31_RS19470 0.73 +1.0 524,762 - EX31_RS19470 0.82 +0.1 524,762 - EX31_RS19470 0.82 -1.7 524,762 - EX31_RS19470 0.82 +0.4 524,782 + EX31_RS19470 0.86 +0.5 524,782 + EX31_RS19470 0.86 -2.2 524,782 + EX31_RS19470 0.86 -0.2 524,782 + EX31_RS19470 0.86 -1.6 524,782 + EX31_RS19470 0.86 -1.5 524,782 + EX31_RS19470 0.86 -0.4 524,782 + EX31_RS19470 0.86 +0.2 524,783 - EX31_RS19470 0.86 -0.2 524,783 - EX31_RS19470 0.86 -0.5 524,783 - EX31_RS19470 0.86 +0.7 524,783 - EX31_RS19470 0.86 +2.3 524,783 - EX31_RS19470 0.86 +2.3 524,783 - EX31_RS19470 0.86 +0.1 524,783 - EX31_RS19470 0.86 -0.2 524,783 - EX31_RS19470 0.86 -0.2 524,783 - EX31_RS19470 0.86 +1.0 524,783 - EX31_RS19470 0.86 -0.0 524,784 + EX31_RS19470 0.86 +2.3 524,784 + EX31_RS19470 0.86 +2.0 524,784 + EX31_RS19470 0.86 -1.0 524,784 + EX31_RS19470 0.86 -1.7 524,785 - EX31_RS19470 0.87 +2.0 524,785 - EX31_RS19470 0.87 -0.0 524,785 - EX31_RS19470 0.87 +0.2 524,785 - EX31_RS19470 0.87 -1.3 524,785 - EX31_RS19470 0.87 +1.3 524,785 - EX31_RS19470 0.87 -1.0 524,785 - EX31_RS19470 0.87 -1.2 524,785 - EX31_RS19470 0.87 +1.6 524,785 - EX31_RS19470 0.87 +1.4 524,785 - EX31_RS19470 0.87 +1.3 524,785 - EX31_RS19470 0.87 -1.4 524,785 - EX31_RS19470 0.87 -0.0 524,785 - EX31_RS19470 0.87 -0.1 524,785 - EX31_RS19470 0.87 +1.8 524,785 - EX31_RS19470 0.87 -0.2 524,954 + -1.3 524,955 - -0.0 524,955 - -0.3 524,994 + +0.7 525,037 + +0.9 525,040 + +0.7 525,040 + +0.2 525,040 + -0.8 525,041 - -0.2 525,041 - +0.2 525,046 + +1.1 525,046 + -1.6 525,046 + +0.7 525,046 + +0.8 525,046 + +1.5 525,046 + +1.6 525,047 - -0.2 525,072 - +0.1 525,075 + +0.0 525,076 - +2.0 525,079 + +0.2 525,080 - +0.4 525,095 - EX31_RS19475 0.10 -0.5 525,110 + EX31_RS19475 0.18 +0.5 525,110 + EX31_RS19475 0.18 +0.5 525,110 + EX31_RS19475 0.18 +0.4 525,110 + EX31_RS19475 0.18 -1.4 525,110 + EX31_RS19475 0.18 -0.8 525,110 + EX31_RS19475 0.18 +1.0 525,111 - EX31_RS19475 0.18 +1.0 525,111 - EX31_RS19475 0.18 -0.6 525,111 - EX31_RS19475 0.18 +0.4 525,111 - EX31_RS19475 0.18 -0.0 525,111 - EX31_RS19475 0.18 +2.4 525,114 - EX31_RS19475 0.20 +2.2 525,114 - EX31_RS19475 0.20 -0.3 525,127 + EX31_RS19475 0.26 -0.2 525,127 + EX31_RS19475 0.26 -0.2 525,127 + EX31_RS19475 0.26 -0.4 525,127 + EX31_RS19475 0.26 +0.5 525,127 + EX31_RS19475 0.26 -0.8 525,128 - EX31_RS19475 0.26 -1.0 525,128 - EX31_RS19475 0.26 -1.2 525,131 + EX31_RS19475 0.28 -0.6 525,131 + EX31_RS19475 0.28 +1.0 525,131 + EX31_RS19475 0.28 -0.0 525,131 + EX31_RS19475 0.28 -0.2 525,131 + EX31_RS19475 0.28 +0.4 525,132 - EX31_RS19475 0.28 -0.8 525,132 - EX31_RS19475 0.28 -1.0 525,132 - EX31_RS19475 0.28 +0.5 525,132 - EX31_RS19475 0.28 -1.8 525,132 - EX31_RS19475 0.28 +1.0 525,132 - EX31_RS19475 0.28 +1.2 525,141 + EX31_RS19475 0.33 +0.7 525,163 + EX31_RS19475 0.44 +0.3 525,164 - EX31_RS19475 0.44 +3.0 525,262 + +0.1 525,262 + +0.5 525,262 + -0.1 525,262 + -0.5 525,262 + +1.0 525,262 + +0.5 525,263 - -0.0 525,310 + -0.6 525,323 + -1.7 525,324 - +1.0 525,351 + +1.1 525,351 + -0.6 525,351 + -1.3 525,351 + +0.1 525,351 + -0.8 525,351 + -0.6 525,351 + -1.3 525,351 + -0.6 525,351 + -0.0 525,351 + -0.2 525,351 + -0.2 525,351 + -1.2 525,351 + +0.4 525,352 - -1.6 525,352 - +1.5 525,352 - -0.4 525,355 + -1.2 525,355 + +1.5 525,355 + -0.4 525,355 + -0.2 525,356 - -0.0 525,356 - -0.0 525,356 - -0.6 525,356 - +2.0 525,359 + -0.6 525,359 + -3.2 525,360 - -1.6 525,374 + -1.8 525,375 - -1.4 525,382 + -1.4 525,382 + +0.4 525,383 - -0.6 525,392 + +0.5 525,401 + -1.4 525,401 + +1.5 525,401 + -0.0 525,402 - -0.3 525,497 + EX31_RS19480 0.11 -1.1 525,497 + EX31_RS19480 0.11 -1.5 525,498 - EX31_RS19480 0.11 -0.0 525,535 + EX31_RS19480 0.14 +0.1 525,849 + EX31_RS19480 0.40 -0.8 525,849 + EX31_RS19480 0.40 -0.6 525,876 + EX31_RS19480 0.42 -1.4 525,876 + EX31_RS19480 0.42 +2.0 525,877 - EX31_RS19480 0.42 +0.4 525,879 - EX31_RS19480 0.43 +1.0 525,927 + EX31_RS19480 0.47 -0.5 525,927 + EX31_RS19480 0.47 -0.0 525,927 + EX31_RS19480 0.47 +0.8 526,034 + EX31_RS19480 0.56 -1.2 526,034 + EX31_RS19480 0.56 +0.2 526,034 + EX31_RS19480 0.56 -0.6 526,034 + EX31_RS19480 0.56 +2.5 526,046 + EX31_RS19480 0.57 -1.8 526,046 + EX31_RS19480 0.57 -1.6 526,047 - EX31_RS19480 0.57 +1.0 526,118 + EX31_RS19480 0.63 -1.0 526,118 + EX31_RS19480 0.63 +1.0 526,119 - EX31_RS19480 0.63 -1.4 526,179 - EX31_RS19480 0.68 -0.0 526,227 + EX31_RS19480 0.72 +0.5 526,242 + EX31_RS19480 0.73 +0.5 526,242 + EX31_RS19480 0.73 -0.0 526,242 + EX31_RS19480 0.73 -1.6 526,242 + EX31_RS19480 0.73 -0.0 526,242 + EX31_RS19480 0.73 -0.5 526,242 + EX31_RS19480 0.73 +0.4 526,243 - EX31_RS19480 0.73 -0.0 526,243 - EX31_RS19480 0.73 +0.2 526,243 - EX31_RS19480 0.73 -0.0 526,243 - EX31_RS19480 0.73 -0.0 526,302 + EX31_RS19480 0.78 -0.5 526,302 + EX31_RS19480 0.78 -0.0 526,303 - EX31_RS19480 0.78 +1.0 526,351 + EX31_RS19480 0.82 -0.0 526,411 + EX31_RS19480 0.87 -1.0 526,411 + EX31_RS19480 0.87 +0.1 526,411 + EX31_RS19480 0.87 -1.0 526,411 + EX31_RS19480 0.87 -0.0 526,445 + EX31_RS19480 0.90 -2.0 526,466 + -0.5 526,566 + +1.0 526,567 - -0.6 526,611 + +0.2 526,611 + +0.4 526,611 + -0.4 526,611 + +1.5 526,611 + +2.3 526,611 + -1.0 526,613 + -0.1 526,613 + -1.2 526,614 - -0.6 526,614 - -2.0 526,663 + -2.0 526,663 + -0.8 526,663 + -1.6 526,743 + -2.0 526,744 - +1.4 526,749 + -1.4 526,749 + +0.4 526,749 + +0.2 526,749 + -0.5 526,749 + -2.2 526,749 + -1.2 526,749 + +1.5 526,750 - -1.0 526,750 - -0.0 526,750 - +1.0 526,750 - -0.6 526,750 - +1.0 526,750 - +1.5 526,839 + -0.0 526,839 + +0.5 526,902 + -0.2 526,903 - -1.0 527,060 + EX31_RS19485 0.15 -1.6 527,185 - EX31_RS19485 0.21 -0.0 527,247 + EX31_RS19485 0.24 +0.3 527,283 + EX31_RS19485 0.25 -2.9 527,283 + EX31_RS19485 0.25 -0.6 527,283 + EX31_RS19485 0.25 -1.0 527,283 + EX31_RS19485 0.25 -0.2 527,283 + EX31_RS19485 0.25 +1.0 527,284 - EX31_RS19485 0.25 +0.2 527,341 - EX31_RS19485 0.28 +1.6 527,457 + EX31_RS19485 0.33 -0.6 527,457 + EX31_RS19485 0.33 -2.0 527,458 - EX31_RS19485 0.33 -0.0 527,458 - EX31_RS19485 0.33 -0.0 527,529 + EX31_RS19485 0.37 -0.0 527,529 + EX31_RS19485 0.37 -0.8
Or see this region's nucleotide sequence