Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19425 and EX31_RS19430 are separated by 89 nucleotides EX31_RS19430 and EX31_RS19435 are separated by 22 nucleotides
EX31_RS19425: EX31_RS19425 - NADH-quinone oxidoreductase subunit C/D, at 513,265 to 515,064
_RS19425
EX31_RS19430: EX31_RS19430 - NADH-quinone oxidoreductase subunit B, at 515,154 to 515,828
_RS19430
EX31_RS19435: EX31_RS19435 - NADH-quinone oxidoreductase subunit A, at 515,851 to 516,294
_RS19435
Position (kb) 515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.209 kb on - strand, within EX31_RS19425 at 514.209 kb on - strand, within EX31_RS19425 at 514.209 kb on - strand, within EX31_RS19425 at 514.256 kb on + strand, within EX31_RS19425 at 514.257 kb on - strand, within EX31_RS19425 at 514.257 kb on - strand, within EX31_RS19425 at 514.265 kb on + strand, within EX31_RS19425 at 514.266 kb on - strand, within EX31_RS19425 at 514.266 kb on - strand, within EX31_RS19425 at 514.266 kb on - strand, within EX31_RS19425 at 514.372 kb on - strand, within EX31_RS19425 at 514.402 kb on - strand, within EX31_RS19425 at 514.422 kb on + strand, within EX31_RS19425 at 514.422 kb on + strand, within EX31_RS19425 at 514.422 kb on + strand, within EX31_RS19425 at 514.423 kb on - strand, within EX31_RS19425 at 514.509 kb on + strand, within EX31_RS19425 at 514.558 kb on - strand, within EX31_RS19425 at 514.594 kb on - strand, within EX31_RS19425 at 514.666 kb on - strand, within EX31_RS19425 at 514.770 kb on - strand, within EX31_RS19425 at 514.817 kb on - strand, within EX31_RS19425 at 514.857 kb on - strand, within EX31_RS19425 at 514.884 kb on + strand, within EX31_RS19425 at 514.885 kb on - strand at 514.898 kb on - strand at 514.953 kb on + strand at 514.953 kb on + strand at 515.020 kb on - strand at 515.065 kb on - strand at 515.081 kb on + strand at 515.082 kb on - strand at 515.082 kb on - strand at 515.082 kb on - strand at 515.082 kb on - strand at 515.093 kb on + strand at 515.094 kb on - strand at 515.101 kb on - strand at 515.110 kb on - strand at 515.116 kb on - strand at 515.116 kb on - strand at 515.116 kb on - strand at 515.116 kb on - strand at 515.116 kb on - strand at 515.116 kb on - strand at 515.156 kb on - strand at 515.193 kb on - strand at 515.193 kb on - strand at 515.208 kb on - strand at 515.228 kb on + strand, within EX31_RS19430 at 515.239 kb on + strand, within EX31_RS19430 at 515.322 kb on - strand, within EX31_RS19430 at 515.322 kb on - strand, within EX31_RS19430 at 515.322 kb on - strand, within EX31_RS19430 at 515.322 kb on - strand, within EX31_RS19430 at 515.322 kb on - strand, within EX31_RS19430 at 515.323 kb on + strand, within EX31_RS19430 at 515.323 kb on + strand, within EX31_RS19430 at 515.324 kb on - strand, within EX31_RS19430 at 515.324 kb on - strand, within EX31_RS19430 at 515.324 kb on - strand, within EX31_RS19430 at 515.356 kb on + strand, within EX31_RS19430 at 515.357 kb on - strand, within EX31_RS19430 at 515.357 kb on - strand, within EX31_RS19430 at 515.402 kb on - strand, within EX31_RS19430 at 515.402 kb on - strand, within EX31_RS19430 at 515.405 kb on + strand, within EX31_RS19430 at 515.406 kb on - strand, within EX31_RS19430 at 515.410 kb on + strand, within EX31_RS19430 at 515.410 kb on + strand, within EX31_RS19430 at 515.411 kb on - strand, within EX31_RS19430 at 515.411 kb on - strand, within EX31_RS19430 at 515.476 kb on + strand, within EX31_RS19430 at 515.624 kb on - strand, within EX31_RS19430 at 515.624 kb on - strand, within EX31_RS19430 at 515.819 kb on + strand at 515.820 kb on - strand at 515.821 kb on + strand at 515.822 kb on - strand at 515.822 kb on - strand at 515.822 kb on - strand at 515.832 kb on - strand at 515.853 kb on - strand at 515.871 kb on + strand at 515.874 kb on + strand at 515.875 kb on - strand at 515.893 kb on - strand at 515.893 kb on - strand at 515.893 kb on - strand at 515.949 kb on - strand, within EX31_RS19435 at 515.985 kb on + strand, within EX31_RS19435 at 516.039 kb on - strand, within EX31_RS19435 at 516.044 kb on + strand, within EX31_RS19435 at 516.045 kb on - strand, within EX31_RS19435 at 516.136 kb on - strand, within EX31_RS19435 at 516.288 kb on + strand at 516.289 kb on - strand at 516.289 kb on - strand at 516.289 kb on - strand at 516.299 kb on + strand at 516.335 kb on - strand at 516.412 kb on - strand at 516.412 kb on - strand at 516.487 kb on + strand at 516.493 kb on - strand at 516.507 kb on + strand at 516.507 kb on + strand at 516.508 kb on - strand at 516.512 kb on - strand at 516.516 kb on + strand at 516.516 kb on + strand at 516.516 kb on + strand at 516.517 kb on - strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.534 kb on - strand at 516.534 kb on - strand at 516.534 kb on - strand at 516.539 kb on - strand at 516.539 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.608 kb on + strand at 516.611 kb on + strand at 516.611 kb on + strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.625 kb on + strand at 516.625 kb on + strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.694 kb on - strand at 516.810 kb on - strand at 516.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 514,209 - EX31_RS19425 0.52 -1.1 514,209 - EX31_RS19425 0.52 -1.1 514,209 - EX31_RS19425 0.52 -0.1 514,256 + EX31_RS19425 0.55 -0.1 514,257 - EX31_RS19425 0.55 +0.9 514,257 - EX31_RS19425 0.55 -1.6 514,265 + EX31_RS19425 0.56 +0.9 514,266 - EX31_RS19425 0.56 -1.9 514,266 - EX31_RS19425 0.56 -0.1 514,266 - EX31_RS19425 0.56 -0.6 514,372 - EX31_RS19425 0.61 -2.5 514,402 - EX31_RS19425 0.63 -1.6 514,422 + EX31_RS19425 0.64 -0.6 514,422 + EX31_RS19425 0.64 +0.9 514,422 + EX31_RS19425 0.64 -1.4 514,423 - EX31_RS19425 0.64 -1.5 514,509 + EX31_RS19425 0.69 +0.9 514,558 - EX31_RS19425 0.72 -1.6 514,594 - EX31_RS19425 0.74 +0.9 514,666 - EX31_RS19425 0.78 +0.9 514,770 - EX31_RS19425 0.84 -0.1 514,817 - EX31_RS19425 0.86 -0.6 514,857 - EX31_RS19425 0.88 -0.1 514,884 + EX31_RS19425 0.90 +0.9 514,885 - -1.4 514,898 - -0.1 514,953 + -1.4 514,953 + -0.6 515,020 - -1.2 515,065 - -0.1 515,081 + -1.1 515,082 - +0.4 515,082 - +0.2 515,082 - -0.4 515,082 - +0.3 515,093 + +0.9 515,094 - +2.5 515,101 - -0.8 515,110 - +0.3 515,116 - +0.4 515,116 - +0.5 515,116 - -0.7 515,116 - -0.2 515,116 - -1.1 515,116 - -2.8 515,156 - +0.7 515,193 - -1.2 515,193 - +0.9 515,208 - +1.8 515,228 + EX31_RS19430 0.11 +2.9 515,239 + EX31_RS19430 0.13 -0.6 515,322 - EX31_RS19430 0.25 +0.4 515,322 - EX31_RS19430 0.25 -0.6 515,322 - EX31_RS19430 0.25 -0.6 515,322 - EX31_RS19430 0.25 +0.9 515,322 - EX31_RS19430 0.25 +0.9 515,323 + EX31_RS19430 0.25 -1.4 515,323 + EX31_RS19430 0.25 +0.4 515,324 - EX31_RS19430 0.25 -1.1 515,324 - EX31_RS19430 0.25 -1.2 515,324 - EX31_RS19430 0.25 -2.1 515,356 + EX31_RS19430 0.30 -0.6 515,357 - EX31_RS19430 0.30 -0.6 515,357 - EX31_RS19430 0.30 -0.1 515,402 - EX31_RS19430 0.37 -1.1 515,402 - EX31_RS19430 0.37 -0.9 515,405 + EX31_RS19430 0.37 +2.9 515,406 - EX31_RS19430 0.37 +0.9 515,410 + EX31_RS19430 0.38 -1.4 515,410 + EX31_RS19430 0.38 -1.1 515,411 - EX31_RS19430 0.38 -0.6 515,411 - EX31_RS19430 0.38 -1.2 515,476 + EX31_RS19430 0.48 +1.5 515,624 - EX31_RS19430 0.70 +0.9 515,624 - EX31_RS19430 0.70 -0.1 515,819 + -1.1 515,820 - -0.6 515,821 + +2.5 515,822 - +0.9 515,822 - +0.4 515,822 - -1.6 515,832 - -1.6 515,853 - +0.4 515,871 + -0.1 515,874 + -0.1 515,875 - -0.6 515,893 - +0.2 515,893 - +0.1 515,893 - -1.1 515,949 - EX31_RS19435 0.22 +0.9 515,985 + EX31_RS19435 0.30 -0.1 516,039 - EX31_RS19435 0.42 +0.9 516,044 + EX31_RS19435 0.43 -1.3 516,045 - EX31_RS19435 0.44 +0.9 516,136 - EX31_RS19435 0.64 +0.4 516,288 + -1.6 516,289 - -2.6 516,289 - -1.2 516,289 - +1.5 516,299 + -1.4 516,335 - +0.0 516,412 - +0.1 516,412 - -0.2 516,487 + +1.3 516,493 - -0.3 516,507 + -0.8 516,507 + -0.7 516,508 - +1.9 516,512 - +1.1 516,516 + +0.3 516,516 + +0.2 516,516 + +0.4 516,517 - -0.2 516,533 + +0.2 516,533 + +1.7 516,533 + -0.6 516,533 + -1.6 516,533 + +0.3 516,534 - -0.2 516,534 - +0.4 516,534 - +1.1 516,539 - -0.3 516,539 - +0.9 516,590 - +1.1 516,590 - +0.9 516,590 - -0.6 516,590 - +0.7 516,608 + +0.4 516,611 + +1.3 516,611 + +0.2 516,612 - -1.9 516,612 - -0.1 516,612 - +0.4 516,612 - +0.8 516,612 - +0.9 516,625 + +0.9 516,625 + +0.4 516,626 - -1.4 516,626 - +0.4 516,626 - +0.9 516,626 - +0.8 516,694 - -1.1 516,810 - -0.9 516,814 + -1.1
Or see this region's nucleotide sequence