Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19375 and EX31_RS19380 are separated by 6 nucleotides EX31_RS19380 and EX31_RS19385 are separated by 97 nucleotides
EX31_RS19375: EX31_RS19375 - NADH-quinone oxidoreductase subunit NuoN, at 501,157 to 502,617
_RS19375
EX31_RS19380: EX31_RS19380 - NADH-quinone oxidoreductase subunit M, at 502,624 to 504,153
_RS19380
EX31_RS19385: EX31_RS19385 - NADH-quinone oxidoreductase subunit L, at 504,251 to 506,098
_RS19385
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.630 kb on - strand, within EX31_RS19375 at 501.630 kb on - strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.632 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.391 kb on + strand, within EX31_RS19375 at 502.391 kb on + strand, within EX31_RS19375 at 502.392 kb on - strand, within EX31_RS19375 at 502.457 kb on + strand, within EX31_RS19375 at 502.458 kb on - strand, within EX31_RS19375 at 502.460 kb on + strand, within EX31_RS19375 at 502.586 kb on - strand at 502.608 kb on + strand at 502.608 kb on + strand at 502.744 kb on + strand at 502.745 kb on - strand at 502.745 kb on - strand at 502.745 kb on - strand at 502.851 kb on - strand, within EX31_RS19380 at 502.947 kb on + strand, within EX31_RS19380 at 502.948 kb on - strand, within EX31_RS19380 at 502.948 kb on - strand, within EX31_RS19380 at 503.043 kb on + strand, within EX31_RS19380 at 503.069 kb on - strand, within EX31_RS19380 at 503.091 kb on + strand, within EX31_RS19380 at 503.162 kb on + strand, within EX31_RS19380 at 503.221 kb on - strand, within EX31_RS19380 at 503.221 kb on - strand, within EX31_RS19380 at 503.256 kb on - strand, within EX31_RS19380 at 503.256 kb on - strand, within EX31_RS19380 at 503.263 kb on - strand, within EX31_RS19380 at 503.493 kb on - strand, within EX31_RS19380 at 503.535 kb on - strand, within EX31_RS19380 at 503.564 kb on + strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.622 kb on + strand, within EX31_RS19380 at 503.623 kb on - strand, within EX31_RS19380 at 503.624 kb on + strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.625 kb on - strand, within EX31_RS19380 at 503.652 kb on + strand, within EX31_RS19380 at 503.662 kb on - strand, within EX31_RS19380 at 503.703 kb on - strand, within EX31_RS19380 at 504.074 kb on - strand at 504.130 kb on - strand at 504.133 kb on + strand at 504.134 kb on - strand at 504.149 kb on - strand at 504.149 kb on - strand at 504.175 kb on - strand at 504.188 kb on - strand at 504.188 kb on - strand at 504.188 kb on - strand at 504.229 kb on + strand at 504.230 kb on - strand at 504.230 kb on - strand at 504.233 kb on + strand at 504.233 kb on + strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.234 kb on - strand at 504.241 kb on + strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.242 kb on - strand at 504.252 kb on + strand at 504.310 kb on - strand at 504.310 kb on - strand at 504.456 kb on + strand, within EX31_RS19385 at 504.556 kb on - strand, within EX31_RS19385 at 504.711 kb on - strand, within EX31_RS19385 at 504.963 kb on + strand, within EX31_RS19385 at 504.963 kb on + strand, within EX31_RS19385 at 504.983 kb on - strand, within EX31_RS19385 at 504.987 kb on - strand, within EX31_RS19385 at 505.138 kb on - strand, within EX31_RS19385
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 501,630 - EX31_RS19375 0.32 -1.4 501,630 - EX31_RS19375 0.32 +2.3 501,631 + EX31_RS19375 0.32 -0.1 501,631 + EX31_RS19375 0.32 -0.7 501,631 + EX31_RS19375 0.32 +2.5 501,632 - EX31_RS19375 0.33 -1.4 502,302 - EX31_RS19375 0.78 -1.4 502,302 - EX31_RS19375 0.78 -1.1 502,302 - EX31_RS19375 0.78 -1.1 502,391 + EX31_RS19375 0.84 -1.7 502,391 + EX31_RS19375 0.84 -1.1 502,392 - EX31_RS19375 0.85 +0.9 502,457 + EX31_RS19375 0.89 -0.7 502,458 - EX31_RS19375 0.89 -1.4 502,460 + EX31_RS19375 0.89 +0.9 502,586 - -1.1 502,608 + +0.9 502,608 + -0.7 502,744 + -0.7 502,745 - -0.1 502,745 - +0.9 502,745 - -0.1 502,851 - EX31_RS19380 0.15 -0.1 502,947 + EX31_RS19380 0.21 -0.1 502,948 - EX31_RS19380 0.21 -0.9 502,948 - EX31_RS19380 0.21 -0.4 503,043 + EX31_RS19380 0.27 +0.3 503,069 - EX31_RS19380 0.29 +0.7 503,091 + EX31_RS19380 0.31 +0.9 503,162 + EX31_RS19380 0.35 -1.1 503,221 - EX31_RS19380 0.39 -1.9 503,221 - EX31_RS19380 0.39 -1.1 503,256 - EX31_RS19380 0.41 +0.9 503,256 - EX31_RS19380 0.41 -1.4 503,263 - EX31_RS19380 0.42 -2.4 503,493 - EX31_RS19380 0.57 +0.9 503,535 - EX31_RS19380 0.60 +0.9 503,564 + EX31_RS19380 0.61 -0.7 503,565 - EX31_RS19380 0.62 -1.4 503,565 - EX31_RS19380 0.62 +0.1 503,565 - EX31_RS19380 0.62 -1.1 503,622 + EX31_RS19380 0.65 -2.4 503,623 - EX31_RS19380 0.65 -0.1 503,624 + EX31_RS19380 0.65 +0.9 503,625 - EX31_RS19380 0.65 +0.9 503,625 - EX31_RS19380 0.65 -2.5 503,625 - EX31_RS19380 0.65 -1.4 503,625 - EX31_RS19380 0.65 -0.7 503,652 + EX31_RS19380 0.67 -1.1 503,662 - EX31_RS19380 0.68 +1.9 503,703 - EX31_RS19380 0.71 +0.3 504,074 - +0.2 504,130 - -1.7 504,133 + -1.1 504,134 - -1.4 504,149 - +1.5 504,149 - +0.9 504,175 - +0.6 504,188 - +0.6 504,188 - -0.3 504,188 - +0.3 504,229 + -0.1 504,230 - +0.5 504,230 - -0.1 504,233 + -0.1 504,233 + -0.1 504,234 - -1.4 504,234 - -1.2 504,234 - +0.2 504,234 - -0.5 504,234 - -0.7 504,234 - -0.8 504,234 - -0.1 504,234 - -1.0 504,234 - -0.9 504,234 - -2.4 504,241 + +0.1 504,242 - -0.1 504,242 - +0.3 504,242 - -0.2 504,242 - -1.1 504,252 + -1.7 504,310 - -1.1 504,310 - -1.1 504,456 + EX31_RS19385 0.11 -2.2 504,556 - EX31_RS19385 0.17 +0.2 504,711 - EX31_RS19385 0.25 -0.1 504,963 + EX31_RS19385 0.39 +0.5 504,963 + EX31_RS19385 0.39 +1.5 504,983 - EX31_RS19385 0.40 +0.9 504,987 - EX31_RS19385 0.40 -0.7 505,138 - EX31_RS19385 0.48 -0.1
Or see this region's nucleotide sequence