Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18695 and EX31_RS18700 are separated by 175 nucleotides EX31_RS18700 and EX31_RS18705 are separated by 125 nucleotides EX31_RS18705 and EX31_RS18710 are separated by 199 nucleotides
EX31_RS18695: EX31_RS18695 - DUF418 family protein, at 319,455 to 320,609
_RS18695
EX31_RS18700: EX31_RS18700 - GTP cyclohydrolase I FolE, at 320,785 to 321,450
_RS18700
EX31_RS18705: EX31_RS18705 - YbfB/YjiJ family MFS transporter, at 321,576 to 322,703
_RS18705
EX31_RS18710: EX31_RS18710 - LysR family transcriptional regulator, at 322,903 to 323,832
_RS18710
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 320.597 kb on + strand at 320.598 kb on - strand at 320.639 kb on + strand at 320.639 kb on + strand at 320.639 kb on + strand at 320.639 kb on + strand at 320.639 kb on + strand at 320.643 kb on + strand at 320.643 kb on + strand at 320.683 kb on + strand at 320.683 kb on + strand at 320.684 kb on - strand at 320.684 kb on - strand at 320.714 kb on + strand at 320.715 kb on - strand at 320.715 kb on - strand at 320.783 kb on - strand at 320.786 kb on + strand at 320.787 kb on - strand at 320.787 kb on - strand at 320.787 kb on - strand at 320.827 kb on - strand at 320.827 kb on - strand at 321.472 kb on - strand at 321.472 kb on - strand at 321.472 kb on - strand at 321.472 kb on - strand at 321.472 kb on - strand at 321.510 kb on + strand at 321.510 kb on + strand at 321.511 kb on - strand at 321.511 kb on - strand at 321.511 kb on - strand at 321.511 kb on - strand at 321.566 kb on + strand at 321.566 kb on + strand at 321.567 kb on - strand at 321.584 kb on + strand at 321.584 kb on + strand at 321.585 kb on - strand at 321.634 kb on + strand at 321.634 kb on + strand at 321.635 kb on - strand at 321.697 kb on - strand, within EX31_RS18705 at 321.737 kb on + strand, within EX31_RS18705 at 321.737 kb on + strand, within EX31_RS18705 at 321.738 kb on - strand, within EX31_RS18705 at 321.739 kb on + strand, within EX31_RS18705 at 321.739 kb on + strand, within EX31_RS18705 at 321.739 kb on + strand, within EX31_RS18705 at 321.739 kb on + strand, within EX31_RS18705 at 321.739 kb on + strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.740 kb on - strand, within EX31_RS18705 at 321.772 kb on + strand, within EX31_RS18705 at 321.772 kb on + strand, within EX31_RS18705 at 321.777 kb on + strand, within EX31_RS18705 at 321.777 kb on + strand, within EX31_RS18705 at 321.778 kb on - strand, within EX31_RS18705 at 321.778 kb on - strand, within EX31_RS18705 at 321.778 kb on - strand, within EX31_RS18705 at 321.832 kb on - strand, within EX31_RS18705 at 321.891 kb on + strand, within EX31_RS18705 at 321.891 kb on + strand, within EX31_RS18705 at 321.891 kb on + strand, within EX31_RS18705 at 322.038 kb on + strand, within EX31_RS18705 at 322.059 kb on - strand, within EX31_RS18705 at 322.059 kb on - strand, within EX31_RS18705 at 322.059 kb on - strand, within EX31_RS18705 at 322.059 kb on - strand, within EX31_RS18705 at 322.059 kb on - strand, within EX31_RS18705 at 322.060 kb on + strand, within EX31_RS18705 at 322.060 kb on + strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.061 kb on - strand, within EX31_RS18705 at 322.081 kb on + strand, within EX31_RS18705 at 322.081 kb on + strand, within EX31_RS18705 at 322.082 kb on - strand, within EX31_RS18705 at 322.082 kb on - strand, within EX31_RS18705 at 322.082 kb on - strand, within EX31_RS18705 at 322.082 kb on - strand, within EX31_RS18705 at 322.181 kb on + strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.182 kb on - strand, within EX31_RS18705 at 322.214 kb on - strand, within EX31_RS18705 at 322.214 kb on - strand, within EX31_RS18705 at 322.337 kb on - strand, within EX31_RS18705 at 322.418 kb on + strand, within EX31_RS18705 at 322.418 kb on + strand, within EX31_RS18705 at 322.418 kb on + strand, within EX31_RS18705 at 322.418 kb on + strand, within EX31_RS18705 at 322.419 kb on - strand, within EX31_RS18705 at 322.419 kb on - strand, within EX31_RS18705 at 322.419 kb on - strand, within EX31_RS18705 at 322.419 kb on - strand, within EX31_RS18705 at 322.555 kb on + strand, within EX31_RS18705 at 322.556 kb on - strand, within EX31_RS18705 at 322.556 kb on - strand, within EX31_RS18705 at 322.608 kb on + strand at 322.608 kb on + strand at 322.608 kb on + strand at 322.608 kb on + strand at 322.609 kb on - strand at 322.609 kb on - strand at 322.609 kb on - strand at 322.609 kb on - strand at 322.609 kb on - strand at 322.609 kb on - strand at 322.632 kb on - strand at 322.737 kb on - strand at 322.738 kb on - strand at 322.738 kb on - strand at 322.760 kb on - strand at 322.805 kb on + strand at 322.832 kb on + strand at 322.838 kb on + strand at 322.860 kb on + strand at 323.101 kb on + strand, within EX31_RS18710 at 323.101 kb on + strand, within EX31_RS18710 at 323.101 kb on + strand, within EX31_RS18710 at 323.102 kb on - strand, within EX31_RS18710 at 323.233 kb on + strand, within EX31_RS18710 at 323.233 kb on + strand, within EX31_RS18710 at 323.233 kb on + strand, within EX31_RS18710 at 323.233 kb on + strand, within EX31_RS18710 at 323.233 kb on + strand, within EX31_RS18710 at 323.358 kb on + strand, within EX31_RS18710 at 323.358 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.370 kb on + strand, within EX31_RS18710 at 323.694 kb on + strand, within EX31_RS18710 at 323.694 kb on + strand, within EX31_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 320,597 + +0.3 320,598 - +1.5 320,639 + +0.7 320,639 + +0.7 320,639 + -1.7 320,639 + -0.6 320,639 + -0.1 320,643 + -1.8 320,643 + -0.2 320,683 + -0.1 320,683 + -0.1 320,684 - -0.1 320,684 - +0.1 320,714 + -0.1 320,715 - -0.9 320,715 - +0.9 320,783 - +1.2 320,786 + +0.9 320,787 - +0.5 320,787 - +0.6 320,787 - +1.2 320,827 - +1.8 320,827 - -0.4 321,472 - +0.7 321,472 - -0.4 321,472 - -0.6 321,472 - +0.9 321,472 - -0.4 321,510 + +0.6 321,510 + +0.6 321,511 - -0.3 321,511 - +0.6 321,511 - -0.5 321,511 - -0.9 321,566 + +0.9 321,566 + +1.7 321,567 - +0.6 321,584 + +0.0 321,584 + +1.3 321,585 - +0.9 321,634 + +2.3 321,634 + +2.1 321,635 - -2.3 321,697 - EX31_RS18705 0.11 -0.6 321,737 + EX31_RS18705 0.14 +1.2 321,737 + EX31_RS18705 0.14 +1.2 321,738 - EX31_RS18705 0.14 +0.7 321,739 + EX31_RS18705 0.14 -0.1 321,739 + EX31_RS18705 0.14 -1.1 321,739 + EX31_RS18705 0.14 +0.1 321,739 + EX31_RS18705 0.14 +0.5 321,739 + EX31_RS18705 0.14 +0.3 321,740 - EX31_RS18705 0.15 +0.1 321,740 - EX31_RS18705 0.15 -1.4 321,740 - EX31_RS18705 0.15 -0.7 321,740 - EX31_RS18705 0.15 +2.1 321,740 - EX31_RS18705 0.15 -0.1 321,740 - EX31_RS18705 0.15 +0.3 321,740 - EX31_RS18705 0.15 +0.2 321,740 - EX31_RS18705 0.15 +1.2 321,740 - EX31_RS18705 0.15 -0.0 321,740 - EX31_RS18705 0.15 -0.4 321,772 + EX31_RS18705 0.17 -1.3 321,772 + EX31_RS18705 0.17 +0.1 321,777 + EX31_RS18705 0.18 +0.8 321,777 + EX31_RS18705 0.18 +0.7 321,778 - EX31_RS18705 0.18 -0.9 321,778 - EX31_RS18705 0.18 +0.6 321,778 - EX31_RS18705 0.18 -0.2 321,832 - EX31_RS18705 0.23 +1.3 321,891 + EX31_RS18705 0.28 +0.9 321,891 + EX31_RS18705 0.28 -0.4 321,891 + EX31_RS18705 0.28 +0.9 322,038 + EX31_RS18705 0.41 +0.1 322,059 - EX31_RS18705 0.43 -0.1 322,059 - EX31_RS18705 0.43 +0.9 322,059 - EX31_RS18705 0.43 -1.9 322,059 - EX31_RS18705 0.43 +1.9 322,059 - EX31_RS18705 0.43 +1.4 322,060 + EX31_RS18705 0.43 +0.6 322,060 + EX31_RS18705 0.43 -0.4 322,061 - EX31_RS18705 0.43 +0.2 322,061 - EX31_RS18705 0.43 +1.6 322,061 - EX31_RS18705 0.43 +2.3 322,061 - EX31_RS18705 0.43 +1.3 322,061 - EX31_RS18705 0.43 +0.2 322,061 - EX31_RS18705 0.43 -0.2 322,061 - EX31_RS18705 0.43 -1.7 322,081 + EX31_RS18705 0.45 +1.1 322,081 + EX31_RS18705 0.45 +0.9 322,082 - EX31_RS18705 0.45 +0.9 322,082 - EX31_RS18705 0.45 -0.1 322,082 - EX31_RS18705 0.45 +0.6 322,082 - EX31_RS18705 0.45 +0.5 322,181 + EX31_RS18705 0.54 +0.6 322,182 - EX31_RS18705 0.54 -0.7 322,182 - EX31_RS18705 0.54 +0.9 322,182 - EX31_RS18705 0.54 +0.0 322,182 - EX31_RS18705 0.54 +0.3 322,182 - EX31_RS18705 0.54 +1.5 322,182 - EX31_RS18705 0.54 +0.1 322,214 - EX31_RS18705 0.57 -1.6 322,214 - EX31_RS18705 0.57 -0.4 322,337 - EX31_RS18705 0.67 +0.2 322,418 + EX31_RS18705 0.75 -1.1 322,418 + EX31_RS18705 0.75 +2.0 322,418 + EX31_RS18705 0.75 +1.1 322,418 + EX31_RS18705 0.75 -0.7 322,419 - EX31_RS18705 0.75 -0.1 322,419 - EX31_RS18705 0.75 +0.4 322,419 - EX31_RS18705 0.75 -0.3 322,419 - EX31_RS18705 0.75 -0.1 322,555 + EX31_RS18705 0.87 -0.1 322,556 - EX31_RS18705 0.87 +0.6 322,556 - EX31_RS18705 0.87 +0.1 322,608 + +1.3 322,608 + +0.3 322,608 + -0.1 322,608 + +0.9 322,609 - +0.7 322,609 - +0.5 322,609 - +0.3 322,609 - +0.6 322,609 - +0.9 322,609 - +1.3 322,632 - +0.9 322,737 - -0.2 322,738 - -1.2 322,738 - +0.2 322,760 - +1.5 322,805 + -0.2 322,832 + -0.1 322,838 + -0.1 322,860 + +1.0 323,101 + EX31_RS18710 0.21 +0.1 323,101 + EX31_RS18710 0.21 -1.8 323,101 + EX31_RS18710 0.21 +0.3 323,102 - EX31_RS18710 0.21 -1.4 323,233 + EX31_RS18710 0.35 +1.9 323,233 + EX31_RS18710 0.35 -0.8 323,233 + EX31_RS18710 0.35 -0.5 323,233 + EX31_RS18710 0.35 +1.1 323,233 + EX31_RS18710 0.35 -0.1 323,358 + EX31_RS18710 0.49 -0.2 323,358 + EX31_RS18710 0.49 +1.1 323,370 + EX31_RS18710 0.50 +0.7 323,370 + EX31_RS18710 0.50 +0.1 323,370 + EX31_RS18710 0.50 -1.6 323,370 + EX31_RS18710 0.50 +0.3 323,370 + EX31_RS18710 0.50 -1.9 323,370 + EX31_RS18710 0.50 +1.3 323,370 + EX31_RS18710 0.50 +0.6 323,694 + EX31_RS18710 0.85 +0.5 323,694 + EX31_RS18710 0.85 -1.4
Or see this region's nucleotide sequence