Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18530 and EX31_RS18535 are separated by 732 nucleotides EX31_RS18535 and EX31_RS18540 are separated by 148 nucleotides
EX31_RS18530: EX31_RS18530 - leucine-responsive transcriptional regulator Lrp, at 280,699 to 281,193
_RS18530
EX31_RS18535: EX31_RS18535 - thioredoxin-disulfide reductase, at 281,926 to 282,894
_RS18535
EX31_RS18540: EX31_RS18540 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 283,043 to 284,809
_RS18540
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.953 kb on + strand, within EX31_RS18530 at 280.954 kb on - strand, within EX31_RS18530 at 280.967 kb on - strand, within EX31_RS18530 at 280.989 kb on - strand, within EX31_RS18530 at 280.989 kb on - strand, within EX31_RS18530 at 280.989 kb on - strand, within EX31_RS18530 at 280.989 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.011 kb on - strand, within EX31_RS18530 at 281.012 kb on + strand, within EX31_RS18530 at 281.013 kb on - strand, within EX31_RS18530 at 281.013 kb on - strand, within EX31_RS18530 at 281.013 kb on - strand, within EX31_RS18530 at 281.013 kb on - strand, within EX31_RS18530 at 281.013 kb on - strand, within EX31_RS18530 at 281.143 kb on - strand, within EX31_RS18530 at 281.152 kb on - strand at 281.189 kb on - strand at 281.195 kb on - strand at 281.195 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.198 kb on - strand at 281.286 kb on - strand at 281.286 kb on - strand at 281.292 kb on + strand at 281.293 kb on - strand at 281.363 kb on - strand at 281.363 kb on - strand at 281.408 kb on - strand at 281.408 kb on - strand at 281.442 kb on - strand at 281.473 kb on - strand at 281.473 kb on - strand at 281.473 kb on - strand at 281.498 kb on - strand at 281.498 kb on - strand at 281.498 kb on - strand at 281.549 kb on - strand at 281.603 kb on + strand at 281.603 kb on + strand at 281.603 kb on + strand at 281.604 kb on - strand at 281.604 kb on - strand at 281.615 kb on - strand at 281.615 kb on - strand at 281.615 kb on - strand at 281.619 kb on - strand at 281.619 kb on - strand at 281.628 kb on - strand at 281.647 kb on + strand at 281.648 kb on - strand at 281.648 kb on - strand at 281.648 kb on - strand at 281.693 kb on - strand at 281.753 kb on + strand at 281.784 kb on - strand at 281.895 kb on - strand at 281.921 kb on + strand at 281.921 kb on + strand at 281.938 kb on - strand at 281.946 kb on + strand at 281.946 kb on + strand at 281.946 kb on + strand at 281.980 kb on + strand at 281.981 kb on - strand at 282.026 kb on + strand, within EX31_RS18535 at 282.026 kb on + strand, within EX31_RS18535 at 282.031 kb on - strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.129 kb on + strand, within EX31_RS18535 at 282.130 kb on - strand, within EX31_RS18535 at 282.280 kb on + strand, within EX31_RS18535 at 282.280 kb on + strand, within EX31_RS18535 at 282.281 kb on - strand, within EX31_RS18535 at 282.281 kb on - strand, within EX31_RS18535 at 282.282 kb on + strand, within EX31_RS18535 at 282.540 kb on + strand, within EX31_RS18535 at 282.541 kb on - strand, within EX31_RS18535 at 282.652 kb on - strand, within EX31_RS18535 at 282.709 kb on + strand, within EX31_RS18535 at 282.756 kb on + strand, within EX31_RS18535 at 282.795 kb on + strand, within EX31_RS18535 at 282.795 kb on + strand, within EX31_RS18535 at 282.795 kb on + strand, within EX31_RS18535 at 282.795 kb on + strand, within EX31_RS18535 at 282.795 kb on + strand, within EX31_RS18535 at 282.799 kb on + strand at 282.834 kb on + strand at 282.834 kb on + strand at 282.834 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.891 kb on - strand at 282.891 kb on - strand at 282.892 kb on + strand at 282.892 kb on + strand at 282.892 kb on + strand at 282.893 kb on - strand at 282.893 kb on - strand at 282.908 kb on + strand at 282.909 kb on - strand at 282.909 kb on - strand at 282.930 kb on + strand at 282.930 kb on + strand at 282.930 kb on + strand at 282.956 kb on + strand at 282.956 kb on + strand at 282.956 kb on + strand at 282.956 kb on + strand at 282.957 kb on - strand at 282.957 kb on - strand at 282.996 kb on + strand at 282.996 kb on + strand at 282.996 kb on + strand at 282.996 kb on + strand at 282.996 kb on + strand at 282.996 kb on + strand at 282.997 kb on - strand at 282.997 kb on - strand at 282.997 kb on - strand at 282.997 kb on - strand at 282.997 kb on - strand at 283.124 kb on - strand at 283.185 kb on + strand at 283.417 kb on + strand, within EX31_RS18540 at 283.842 kb on - strand, within EX31_RS18540
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 280,953 + EX31_RS18530 0.51 +0.8 280,954 - EX31_RS18530 0.52 +0.2 280,967 - EX31_RS18530 0.54 -0.6 280,989 - EX31_RS18530 0.59 -0.3 280,989 - EX31_RS18530 0.59 -0.3 280,989 - EX31_RS18530 0.59 +0.5 280,989 - EX31_RS18530 0.59 -1.2 281,011 - EX31_RS18530 0.63 +0.0 281,011 - EX31_RS18530 0.63 -1.5 281,011 - EX31_RS18530 0.63 +0.7 281,011 - EX31_RS18530 0.63 +0.2 281,011 - EX31_RS18530 0.63 -1.5 281,011 - EX31_RS18530 0.63 +0.4 281,011 - EX31_RS18530 0.63 -0.5 281,011 - EX31_RS18530 0.63 -0.2 281,011 - EX31_RS18530 0.63 -0.5 281,011 - EX31_RS18530 0.63 +0.0 281,011 - EX31_RS18530 0.63 -0.1 281,012 + EX31_RS18530 0.63 +0.8 281,013 - EX31_RS18530 0.63 +0.2 281,013 - EX31_RS18530 0.63 +0.5 281,013 - EX31_RS18530 0.63 -0.8 281,013 - EX31_RS18530 0.63 -1.5 281,013 - EX31_RS18530 0.63 -0.8 281,143 - EX31_RS18530 0.90 +0.8 281,152 - -0.3 281,189 - +0.2 281,195 - +2.2 281,195 - -0.4 281,198 - -0.2 281,198 - +2.4 281,198 - +0.3 281,198 - +2.2 281,198 - -1.8 281,198 - -3.0 281,198 - -0.2 281,198 - +0.3 281,286 - +0.0 281,286 - +1.9 281,292 + -0.2 281,293 - +0.5 281,363 - +0.2 281,363 - +1.6 281,408 - +0.1 281,408 - +0.8 281,442 - -0.5 281,473 - +1.2 281,473 - -0.1 281,473 - -0.9 281,498 - +0.7 281,498 - -0.1 281,498 - +0.5 281,549 - -0.2 281,603 + -0.5 281,603 + +2.1 281,603 + -0.8 281,604 - -0.9 281,604 - +1.1 281,615 - +0.3 281,615 - -0.2 281,615 - +0.2 281,619 - -1.3 281,619 - -0.5 281,628 - +2.2 281,647 + +0.2 281,648 - +1.4 281,648 - -0.1 281,648 - -1.2 281,693 - +0.1 281,753 + +2.6 281,784 - +0.4 281,895 - -0.2 281,921 + +0.4 281,921 + -0.6 281,938 - -0.4 281,946 + +0.8 281,946 + +0.8 281,946 + -1.2 281,980 + +0.4 281,981 - +0.6 282,026 + EX31_RS18535 0.10 -1.5 282,026 + EX31_RS18535 0.10 +1.1 282,031 - EX31_RS18535 0.11 -0.7 282,129 + EX31_RS18535 0.21 +0.8 282,129 + EX31_RS18535 0.21 +1.3 282,129 + EX31_RS18535 0.21 +0.3 282,129 + EX31_RS18535 0.21 +0.1 282,129 + EX31_RS18535 0.21 -0.7 282,129 + EX31_RS18535 0.21 +0.8 282,129 + EX31_RS18535 0.21 -1.2 282,130 - EX31_RS18535 0.21 -1.2 282,280 + EX31_RS18535 0.37 -1.1 282,280 + EX31_RS18535 0.37 +1.6 282,281 - EX31_RS18535 0.37 +0.8 282,281 - EX31_RS18535 0.37 -0.5 282,282 + EX31_RS18535 0.37 -0.7 282,540 + EX31_RS18535 0.63 -1.2 282,541 - EX31_RS18535 0.63 -0.2 282,652 - EX31_RS18535 0.75 -0.7 282,709 + EX31_RS18535 0.81 +0.3 282,756 + EX31_RS18535 0.86 +0.8 282,795 + EX31_RS18535 0.90 -0.0 282,795 + EX31_RS18535 0.90 +1.6 282,795 + EX31_RS18535 0.90 -1.7 282,795 + EX31_RS18535 0.90 -3.4 282,795 + EX31_RS18535 0.90 -0.5 282,799 + -0.5 282,834 + +0.3 282,834 + -0.6 282,834 + -0.9 282,890 + -1.4 282,890 + +1.8 282,891 - -0.2 282,891 - -0.7 282,892 + +0.6 282,892 + -0.0 282,892 + +0.1 282,893 - +2.4 282,893 - +0.7 282,908 + +1.0 282,909 - +2.1 282,909 - -0.2 282,930 + -0.5 282,930 + -2.0 282,930 + -0.4 282,956 + -0.2 282,956 + -0.6 282,956 + +0.3 282,956 + +0.4 282,957 - +0.8 282,957 - +0.7 282,996 + -0.7 282,996 + -0.7 282,996 + -0.7 282,996 + +1.0 282,996 + +1.1 282,996 + +1.0 282,997 - -0.5 282,997 - -1.0 282,997 - -0.7 282,997 - +0.5 282,997 - -1.5 283,124 - -2.0 283,185 + -1.5 283,417 + EX31_RS18540 0.21 -0.7 283,842 - EX31_RS18540 0.45 -0.7
Or see this region's nucleotide sequence