Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18285 and EX31_RS25555 overlap by 11 nucleotides EX31_RS25555 and EX31_RS18290 overlap by 4 nucleotides EX31_RS18290 and EX31_RS18295 are separated by 54 nucleotides EX31_RS18295 and EX31_RS18300 are separated by 11 nucleotides
EX31_RS18285: EX31_RS18285 - phage tail tape measure protein, at 231,071 to 233,524
_RS18285
EX31_RS25555: EX31_RS25555 - GpE family phage tail protein, at 233,514 to 233,672
_RS25555
EX31_RS18290: EX31_RS18290 - phage tail assembly protein, at 233,669 to 233,965
_RS18290
EX31_RS18295: EX31_RS18295 - phage major tail tube protein, at 234,020 to 234,538
_RS18295
EX31_RS18300: EX31_RS18300 - phage tail sheath protein, at 234,550 to 235,737
_RS18300
Position (kb) 233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 232.784 kb on - strand, within EX31_RS18285 at 232.807 kb on + strand, within EX31_RS18285 at 232.985 kb on - strand, within EX31_RS18285 at 232.995 kb on + strand, within EX31_RS18285 at 233.193 kb on + strand, within EX31_RS18285 at 233.194 kb on - strand, within EX31_RS18285 at 233.398 kb on + strand at 233.440 kb on + strand at 233.441 kb on - strand at 233.495 kb on + strand at 233.496 kb on - strand at 233.496 kb on - strand at 233.516 kb on - strand at 233.563 kb on - strand, within EX31_RS25555 at 233.635 kb on - strand, within EX31_RS25555 at 233.691 kb on - strand at 233.772 kb on + strand, within EX31_RS18290 at 233.905 kb on + strand, within EX31_RS18290 at 233.905 kb on + strand, within EX31_RS18290 at 233.914 kb on + strand, within EX31_RS18290 at 233.915 kb on - strand, within EX31_RS18290 at 233.948 kb on - strand at 233.948 kb on - strand at 233.984 kb on + strand at 233.984 kb on + strand at 234.132 kb on + strand, within EX31_RS18295 at 234.132 kb on + strand, within EX31_RS18295 at 234.133 kb on - strand, within EX31_RS18295 at 234.133 kb on - strand, within EX31_RS18295 at 234.135 kb on + strand, within EX31_RS18295 at 234.135 kb on + strand, within EX31_RS18295 at 234.135 kb on + strand, within EX31_RS18295 at 234.135 kb on + strand, within EX31_RS18295 at 234.313 kb on - strand, within EX31_RS18295 at 234.426 kb on + strand, within EX31_RS18295 at 234.426 kb on + strand, within EX31_RS18295 at 234.427 kb on - strand, within EX31_RS18295 at 234.483 kb on + strand, within EX31_RS18295 at 234.483 kb on + strand, within EX31_RS18295 at 234.483 kb on + strand, within EX31_RS18295 at 234.483 kb on + strand, within EX31_RS18295 at 234.483 kb on + strand, within EX31_RS18295 at 234.484 kb on - strand, within EX31_RS18295 at 234.484 kb on - strand, within EX31_RS18295 at 234.500 kb on - strand at 234.513 kb on + strand at 234.514 kb on - strand at 234.514 kb on - strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.552 kb on - strand at 234.552 kb on - strand at 234.558 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.584 kb on + strand at 234.585 kb on - strand at 234.585 kb on - strand at 234.585 kb on - strand at 234.585 kb on - strand at 234.585 kb on - strand at 234.642 kb on - strand at 234.648 kb on - strand at 234.648 kb on - strand at 234.728 kb on + strand, within EX31_RS18300 at 234.786 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.822 kb on + strand, within EX31_RS18300 at 234.823 kb on - strand, within EX31_RS18300 at 234.823 kb on - strand, within EX31_RS18300 at 234.823 kb on - strand, within EX31_RS18300 at 234.870 kb on - strand, within EX31_RS18300 at 234.870 kb on - strand, within EX31_RS18300 at 234.941 kb on - strand, within EX31_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 232,784 - EX31_RS18285 0.70 +1.1 232,807 + EX31_RS18285 0.71 -0.6 232,985 - EX31_RS18285 0.78 +0.1 232,995 + EX31_RS18285 0.78 -0.2 233,193 + EX31_RS18285 0.86 -1.0 233,194 - EX31_RS18285 0.87 -1.2 233,398 + +0.5 233,440 + -0.6 233,441 - +2.2 233,495 + +1.5 233,496 - +0.8 233,496 - +0.1 233,516 - +0.3 233,563 - EX31_RS25555 0.31 -0.1 233,635 - EX31_RS25555 0.76 -0.1 233,691 - -1.7 233,772 + EX31_RS18290 0.35 -1.2 233,905 + EX31_RS18290 0.79 +2.4 233,905 + EX31_RS18290 0.79 +0.1 233,914 + EX31_RS18290 0.82 -0.2 233,915 - EX31_RS18290 0.83 -1.1 233,948 - +1.0 233,948 - -0.8 233,984 + +0.2 233,984 + -2.9 234,132 + EX31_RS18295 0.22 +1.4 234,132 + EX31_RS18295 0.22 +0.1 234,133 - EX31_RS18295 0.22 -0.1 234,133 - EX31_RS18295 0.22 -1.8 234,135 + EX31_RS18295 0.22 -1.0 234,135 + EX31_RS18295 0.22 +0.8 234,135 + EX31_RS18295 0.22 +1.2 234,135 + EX31_RS18295 0.22 -0.2 234,313 - EX31_RS18295 0.56 +0.2 234,426 + EX31_RS18295 0.78 -0.4 234,426 + EX31_RS18295 0.78 -0.8 234,427 - EX31_RS18295 0.78 -2.2 234,483 + EX31_RS18295 0.89 +0.0 234,483 + EX31_RS18295 0.89 -0.1 234,483 + EX31_RS18295 0.89 +0.6 234,483 + EX31_RS18295 0.89 +1.8 234,483 + EX31_RS18295 0.89 -0.0 234,484 - EX31_RS18295 0.89 +0.1 234,484 - EX31_RS18295 0.89 -2.0 234,500 - +0.4 234,513 + -0.4 234,514 - +0.9 234,514 - +0.3 234,551 + +2.4 234,551 + +0.4 234,552 - -1.4 234,552 - +0.1 234,558 + -1.7 234,584 + -0.2 234,584 + -0.1 234,584 + +1.8 234,584 + +0.4 234,584 + -2.5 234,584 + +0.4 234,584 + -0.5 234,585 - -0.2 234,585 - -0.7 234,585 - -2.5 234,585 - +1.3 234,585 - +1.8 234,642 - +1.5 234,648 - -0.4 234,648 - +1.1 234,728 + EX31_RS18300 0.15 -1.0 234,786 + EX31_RS18300 0.20 +0.1 234,822 + EX31_RS18300 0.23 +0.8 234,822 + EX31_RS18300 0.23 +0.6 234,822 + EX31_RS18300 0.23 -0.2 234,822 + EX31_RS18300 0.23 +0.5 234,822 + EX31_RS18300 0.23 +0.1 234,822 + EX31_RS18300 0.23 +1.6 234,823 - EX31_RS18300 0.23 -0.8 234,823 - EX31_RS18300 0.23 +0.8 234,823 - EX31_RS18300 0.23 +0.5 234,870 - EX31_RS18300 0.27 +0.1 234,870 - EX31_RS18300 0.27 -0.1 234,941 - EX31_RS18300 0.33 +0.3
Or see this region's nucleotide sequence