Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18245 and EX31_RS18250 are separated by 196 nucleotides EX31_RS18250 and EX31_RS18255 are separated by 104 nucleotides
EX31_RS18245: EX31_RS18245 - (d)CMP kinase, at 219,544 to 220,242
_RS18245
EX31_RS18250: EX31_RS18250 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 220,439 to 221,722
_RS18250
EX31_RS18255: EX31_RS18255 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 221,827 to 222,912
_RS18255
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 219.495 kb on - strand at 219.495 kb on - strand at 219.719 kb on - strand, within EX31_RS18245 at 219.905 kb on - strand, within EX31_RS18245 at 219.949 kb on - strand, within EX31_RS18245 at 220.156 kb on - strand, within EX31_RS18245 at 220.311 kb on + strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.312 kb on - strand at 220.416 kb on + strand at 220.441 kb on - strand at 220.441 kb on - strand at 221.829 kb on - strand at 221.829 kb on - strand at 221.829 kb on - strand at 221.829 kb on - strand at 221.829 kb on - strand at 221.829 kb on - strand at 221.901 kb on - strand at 221.905 kb on - strand at 221.905 kb on - strand at 222.087 kb on - strand, within EX31_RS18255 at 222.166 kb on - strand, within EX31_RS18255 at 222.166 kb on - strand, within EX31_RS18255 at 222.177 kb on - strand, within EX31_RS18255 at 222.208 kb on - strand, within EX31_RS18255 at 222.208 kb on - strand, within EX31_RS18255 at 222.392 kb on + strand, within EX31_RS18255 at 222.401 kb on - strand, within EX31_RS18255 at 222.479 kb on + strand, within EX31_RS18255 at 222.532 kb on - strand, within EX31_RS18255 at 222.544 kb on - strand, within EX31_RS18255 at 222.544 kb on - strand, within EX31_RS18255 at 222.591 kb on + strand, within EX31_RS18255
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 219,495 - +0.5 219,495 - -1.5 219,719 - EX31_RS18245 0.25 -0.8 219,905 - EX31_RS18245 0.52 +0.8 219,949 - EX31_RS18245 0.58 +0.8 220,156 - EX31_RS18245 0.88 -0.8 220,311 + -0.2 220,312 - -0.4 220,312 - +1.1 220,312 - +0.8 220,312 - +0.2 220,312 - -1.0 220,312 - -0.2 220,312 - -1.8 220,312 - +0.2 220,312 - +0.3 220,312 - +1.3 220,312 - -0.4 220,312 - -0.7 220,416 + +0.2 220,441 - +0.5 220,441 - +0.3 221,829 - -0.0 221,829 - -0.9 221,829 - +0.4 221,829 - +1.0 221,829 - +0.3 221,829 - -0.8 221,901 - -2.0 221,905 - +0.2 221,905 - -3.0 222,087 - EX31_RS18255 0.24 +0.4 222,166 - EX31_RS18255 0.31 -1.2 222,166 - EX31_RS18255 0.31 +0.8 222,177 - EX31_RS18255 0.32 -0.9 222,208 - EX31_RS18255 0.35 -1.2 222,208 - EX31_RS18255 0.35 -0.7 222,392 + EX31_RS18255 0.52 -2.0 222,401 - EX31_RS18255 0.53 -0.8 222,479 + EX31_RS18255 0.60 -0.2 222,532 - EX31_RS18255 0.65 -0.8 222,544 - EX31_RS18255 0.66 -1.2 222,544 - EX31_RS18255 0.66 -0.2 222,591 + EX31_RS18255 0.70 -1.8
Or see this region's nucleotide sequence