Strain Fitness in Rahnella sp. WP5 around EX31_RS18145

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18140 and EX31_RS18145 are separated by 241 nucleotidesEX31_RS18145 and EX31_RS18150 are separated by 85 nucleotidesEX31_RS18150 and EX31_RS18155 are separated by 51 nucleotides EX31_RS18140: EX31_RS18140 - porin OmpC, at 192,848 to 193,957 _RS18140 EX31_RS18145: EX31_RS18145 - aspartate/tyrosine/aromatic aminotransferase, at 194,199 to 195,389 _RS18145 EX31_RS18150: EX31_RS18150 - MBL fold metallo-hydrolase, at 195,475 to 196,122 _RS18150 EX31_RS18155: EX31_RS18155 - YcbK family protein, at 196,174 to 196,725 _RS18155 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 193.203 kb on + strand, within EX31_RS18140at 193.203 kb on + strand, within EX31_RS18140at 193.208 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.215 kb on + strand, within EX31_RS18140at 193.223 kb on + strand, within EX31_RS18140at 193.297 kb on + strand, within EX31_RS18140at 193.297 kb on + strand, within EX31_RS18140at 193.297 kb on + strand, within EX31_RS18140at 193.313 kb on + strand, within EX31_RS18140at 193.318 kb on + strand, within EX31_RS18140at 193.318 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.362 kb on + strand, within EX31_RS18140at 193.435 kb on + strand, within EX31_RS18140at 193.435 kb on + strand, within EX31_RS18140at 193.435 kb on + strand, within EX31_RS18140at 193.436 kb on - strand, within EX31_RS18140at 193.448 kb on + strand, within EX31_RS18140at 193.471 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.487 kb on + strand, within EX31_RS18140at 193.488 kb on - strand, within EX31_RS18140at 193.498 kb on + strand, within EX31_RS18140at 193.504 kb on + strand, within EX31_RS18140at 193.504 kb on + strand, within EX31_RS18140at 193.510 kb on + strand, within EX31_RS18140at 193.510 kb on + strand, within EX31_RS18140at 193.568 kb on + strand, within EX31_RS18140at 193.568 kb on + strand, within EX31_RS18140at 193.576 kb on + strand, within EX31_RS18140at 193.576 kb on + strand, within EX31_RS18140at 193.586 kb on + strand, within EX31_RS18140at 193.601 kb on + strand, within EX31_RS18140at 193.601 kb on + strand, within EX31_RS18140at 193.615 kb on + strand, within EX31_RS18140at 193.615 kb on + strand, within EX31_RS18140at 193.615 kb on + strand, within EX31_RS18140at 193.615 kb on + strand, within EX31_RS18140at 193.616 kb on - strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.714 kb on + strand, within EX31_RS18140at 193.721 kb on + strand, within EX31_RS18140at 193.721 kb on + strand, within EX31_RS18140at 193.732 kb on + strand, within EX31_RS18140at 193.732 kb on + strand, within EX31_RS18140at 193.738 kb on + strand, within EX31_RS18140at 193.771 kb on + strand, within EX31_RS18140at 193.771 kb on + strand, within EX31_RS18140at 193.771 kb on + strand, within EX31_RS18140at 193.775 kb on + strand, within EX31_RS18140at 193.801 kb on + strand, within EX31_RS18140at 193.801 kb on + strand, within EX31_RS18140at 193.801 kb on + strand, within EX31_RS18140at 193.805 kb on + strand, within EX31_RS18140at 193.805 kb on + strand, within EX31_RS18140at 193.809 kb on + strand, within EX31_RS18140at 193.819 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.823 kb on + strand, within EX31_RS18140at 193.824 kb on - strand, within EX31_RS18140at 193.824 kb on - strand, within EX31_RS18140at 193.826 kb on + strand, within EX31_RS18140at 193.826 kb on + strand, within EX31_RS18140at 193.829 kb on + strand, within EX31_RS18140at 193.829 kb on + strand, within EX31_RS18140at 193.829 kb on + strand, within EX31_RS18140at 193.849 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.853 kb on + strandat 193.854 kb on - strandat 193.862 kb on + strandat 193.946 kb on + strandat 193.946 kb on + strandat 193.955 kb on + strandat 193.955 kb on + strandat 193.955 kb on + strandat 193.955 kb on + strandat 193.955 kb on + strandat 193.955 kb on + strandat 193.956 kb on - strandat 193.958 kb on + strandat 193.958 kb on + strandat 193.958 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.965 kb on + strandat 193.977 kb on + strandat 193.977 kb on + strandat 193.977 kb on + strandat 194.199 kb on + strandat 194.384 kb on + strand, within EX31_RS18145at 194.391 kb on + strand, within EX31_RS18145at 194.429 kb on + strand, within EX31_RS18145at 194.430 kb on - strand, within EX31_RS18145at 194.430 kb on - strand, within EX31_RS18145at 194.465 kb on + strand, within EX31_RS18145at 194.643 kb on + strand, within EX31_RS18145at 194.643 kb on + strand, within EX31_RS18145at 194.643 kb on + strand, within EX31_RS18145at 194.646 kb on + strand, within EX31_RS18145at 194.947 kb on + strand, within EX31_RS18145at 194.949 kb on + strand, within EX31_RS18145at 194.949 kb on + strand, within EX31_RS18145at 194.950 kb on - strand, within EX31_RS18145at 194.950 kb on - strand, within EX31_RS18145at 194.950 kb on - strand, within EX31_RS18145at 194.950 kb on - strand, within EX31_RS18145at 194.962 kb on + strand, within EX31_RS18145at 194.962 kb on + strand, within EX31_RS18145at 194.962 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.972 kb on + strand, within EX31_RS18145at 194.973 kb on - strand, within EX31_RS18145at 195.045 kb on + strand, within EX31_RS18145at 195.079 kb on + strand, within EX31_RS18145at 195.130 kb on + strand, within EX31_RS18145at 195.158 kb on + strand, within EX31_RS18145at 195.158 kb on + strand, within EX31_RS18145at 195.218 kb on + strand, within EX31_RS18145at 195.218 kb on + strand, within EX31_RS18145at 195.221 kb on + strand, within EX31_RS18145at 195.222 kb on - strand, within EX31_RS18145at 195.271 kb on + strandat 195.271 kb on + strandat 195.271 kb on + strandat 195.301 kb on - strandat 195.320 kb on + strandat 195.460 kb on - strandat 195.460 kb on - strandat 195.472 kb on + strandat 195.473 kb on - strandat 195.473 kb on - strandat 195.473 kb on - strandat 195.473 kb on - strandat 195.473 kb on - strandat 195.517 kb on - strandat 195.559 kb on - strand, within EX31_RS18150at 195.559 kb on - strand, within EX31_RS18150at 195.587 kb on - strand, within EX31_RS18150at 195.587 kb on - strand, within EX31_RS18150at 195.697 kb on - strand, within EX31_RS18150at 195.697 kb on - strand, within EX31_RS18150at 195.983 kb on - strand, within EX31_RS18150at 196.060 kb on - strandat 196.104 kb on + strandat 196.105 kb on - strandat 196.107 kb on + strandat 196.107 kb on + strandat 196.107 kb on + strandat 196.108 kb on - strandat 196.108 kb on - strandat 196.163 kb on - strandat 196.163 kb on - strandat 196.167 kb on - strandat 196.167 kb on - strandat 196.167 kb on - strandat 196.215 kb on + strandat 196.216 kb on - strandat 196.229 kb on + strandat 196.230 kb on - strand, within EX31_RS18155at 196.234 kb on + strand, within EX31_RS18155at 196.235 kb on - strand, within EX31_RS18155at 196.235 kb on - strand, within EX31_RS18155at 196.235 kb on - strand, within EX31_RS18155at 196.328 kb on + strand, within EX31_RS18155at 196.328 kb on + strand, within EX31_RS18155at 196.328 kb on + strand, within EX31_RS18155at 196.328 kb on + strand, within EX31_RS18155at 196.329 kb on - strand, within EX31_RS18155at 196.329 kb on - strand, within EX31_RS18155

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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193,203 + EX31_RS18140 0.32 +0.3
193,203 + EX31_RS18140 0.32 -1.2
193,208 + EX31_RS18140 0.32 +1.8
193,215 + EX31_RS18140 0.33 -1.1
193,215 + EX31_RS18140 0.33 +1.2
193,215 + EX31_RS18140 0.33 +0.7
193,215 + EX31_RS18140 0.33 -0.6
193,215 + EX31_RS18140 0.33 -0.7
193,215 + EX31_RS18140 0.33 +0.3
193,215 + EX31_RS18140 0.33 +0.5
193,215 + EX31_RS18140 0.33 -1.5
193,215 + EX31_RS18140 0.33 +0.1
193,215 + EX31_RS18140 0.33 +0.8
193,215 + EX31_RS18140 0.33 +0.6
193,223 + EX31_RS18140 0.34 +0.4
193,297 + EX31_RS18140 0.40 +0.6
193,297 + EX31_RS18140 0.40 +0.1
193,297 + EX31_RS18140 0.40 +0.8
193,313 + EX31_RS18140 0.42 +0.4
193,318 + EX31_RS18140 0.42 +0.3
193,318 + EX31_RS18140 0.42 -0.8
193,362 + EX31_RS18140 0.46 +0.0
193,362 + EX31_RS18140 0.46 -2.9
193,362 + EX31_RS18140 0.46 +0.6
193,362 + EX31_RS18140 0.46 +0.6
193,362 + EX31_RS18140 0.46 -1.2
193,362 + EX31_RS18140 0.46 -0.9
193,362 + EX31_RS18140 0.46 -0.6
193,435 + EX31_RS18140 0.53 -1.1
193,435 + EX31_RS18140 0.53 +0.4
193,435 + EX31_RS18140 0.53 -0.2
193,436 - EX31_RS18140 0.53 -1.8
193,448 + EX31_RS18140 0.54 +0.0
193,471 + EX31_RS18140 0.56 -0.0
193,487 + EX31_RS18140 0.58 -0.6
193,487 + EX31_RS18140 0.58 +0.4
193,487 + EX31_RS18140 0.58 +0.8
193,487 + EX31_RS18140 0.58 -0.2
193,487 + EX31_RS18140 0.58 -0.2
193,487 + EX31_RS18140 0.58 -2.0
193,487 + EX31_RS18140 0.58 +0.4
193,487 + EX31_RS18140 0.58 -0.1
193,487 + EX31_RS18140 0.58 +0.5
193,487 + EX31_RS18140 0.58 -0.5
193,487 + EX31_RS18140 0.58 +0.6
193,487 + EX31_RS18140 0.58 -0.5
193,487 + EX31_RS18140 0.58 -0.5
193,487 + EX31_RS18140 0.58 +0.5
193,487 + EX31_RS18140 0.58 -0.1
193,487 + EX31_RS18140 0.58 +0.8
193,488 - EX31_RS18140 0.58 +0.8
193,498 + EX31_RS18140 0.59 +1.0
193,504 + EX31_RS18140 0.59 -0.3
193,504 + EX31_RS18140 0.59 +0.3
193,510 + EX31_RS18140 0.60 -0.5
193,510 + EX31_RS18140 0.60 -0.9
193,568 + EX31_RS18140 0.65 -0.3
193,568 + EX31_RS18140 0.65 -1.3
193,576 + EX31_RS18140 0.66 -0.0
193,576 + EX31_RS18140 0.66 +0.3
193,586 + EX31_RS18140 0.66 +1.0
193,601 + EX31_RS18140 0.68 +0.9
193,601 + EX31_RS18140 0.68 -0.8
193,615 + EX31_RS18140 0.69 +0.2
193,615 + EX31_RS18140 0.69 +2.6
193,615 + EX31_RS18140 0.69 +1.8
193,615 + EX31_RS18140 0.69 +0.8
193,616 - EX31_RS18140 0.69 +0.2
193,714 + EX31_RS18140 0.78 +0.4
193,714 + EX31_RS18140 0.78 +0.6
193,714 + EX31_RS18140 0.78 -0.5
193,714 + EX31_RS18140 0.78 -0.7
193,714 + EX31_RS18140 0.78 +0.2
193,714 + EX31_RS18140 0.78 +0.4
193,714 + EX31_RS18140 0.78 +1.3
193,721 + EX31_RS18140 0.79 +0.2
193,721 + EX31_RS18140 0.79 -0.5
193,732 + EX31_RS18140 0.80 -0.2
193,732 + EX31_RS18140 0.80 -0.1
193,738 + EX31_RS18140 0.80 +0.3
193,771 + EX31_RS18140 0.83 +0.9
193,771 + EX31_RS18140 0.83 +0.3
193,771 + EX31_RS18140 0.83 -0.1
193,775 + EX31_RS18140 0.84 +0.3
193,801 + EX31_RS18140 0.86 +1.0
193,801 + EX31_RS18140 0.86 +0.8
193,801 + EX31_RS18140 0.86 -0.8
193,805 + EX31_RS18140 0.86 -0.8
193,805 + EX31_RS18140 0.86 +0.1
193,809 + EX31_RS18140 0.87 -1.8
193,819 + EX31_RS18140 0.87 +0.8
193,823 + EX31_RS18140 0.88 +0.5
193,823 + EX31_RS18140 0.88 -1.6
193,823 + EX31_RS18140 0.88 -1.2
193,823 + EX31_RS18140 0.88 +0.6
193,823 + EX31_RS18140 0.88 -1.5
193,823 + EX31_RS18140 0.88 +1.0
193,824 - EX31_RS18140 0.88 +0.4
193,824 - EX31_RS18140 0.88 +1.8
193,826 + EX31_RS18140 0.88 -0.6
193,826 + EX31_RS18140 0.88 -2.7
193,829 + EX31_RS18140 0.88 +0.8
193,829 + EX31_RS18140 0.88 +0.2
193,829 + EX31_RS18140 0.88 -0.7
193,849 + +1.5
193,853 + -0.1
193,853 + -0.6
193,853 + -0.6
193,853 + -0.2
193,853 + -1.9
193,853 + -0.5
193,853 + +0.8
193,853 + -1.0
193,853 + -0.7
193,853 + -0.2
193,853 + -0.1
193,853 + +0.6
193,853 + +0.8
193,854 - -1.5
193,862 + +0.0
193,946 + -1.8
193,946 + +2.8
193,955 + -0.1
193,955 + -0.5
193,955 + -0.7
193,955 + +0.9
193,955 + +0.9
193,955 + -0.7
193,956 - +0.2
193,958 + +0.6
193,958 + -1.2
193,958 + +0.8
193,965 + +0.5
193,965 + +0.3
193,965 + +1.4
193,965 + +1.8
193,965 + -0.0
193,965 + +0.4
193,965 + -0.2
193,977 + -1.4
193,977 + -2.2
193,977 + +1.3
194,199 + -1.2
194,384 + EX31_RS18145 0.16 -2.2
194,391 + EX31_RS18145 0.16 -1.4
194,429 + EX31_RS18145 0.19 -0.4
194,430 - EX31_RS18145 0.19 -1.0
194,430 - EX31_RS18145 0.19 +0.4
194,465 + EX31_RS18145 0.22 -0.2
194,643 + EX31_RS18145 0.37 -0.8
194,643 + EX31_RS18145 0.37 -1.5
194,643 + EX31_RS18145 0.37 +0.2
194,646 + EX31_RS18145 0.38 -0.8
194,947 + EX31_RS18145 0.63 +0.2
194,949 + EX31_RS18145 0.63 -1.1
194,949 + EX31_RS18145 0.63 -1.5
194,950 - EX31_RS18145 0.63 -0.2
194,950 - EX31_RS18145 0.63 +0.2
194,950 - EX31_RS18145 0.63 +1.4
194,950 - EX31_RS18145 0.63 +0.3
194,962 + EX31_RS18145 0.64 +0.2
194,962 + EX31_RS18145 0.64 -1.3
194,962 + EX31_RS18145 0.64 +0.2
194,972 + EX31_RS18145 0.65 -0.2
194,972 + EX31_RS18145 0.65 +0.0
194,972 + EX31_RS18145 0.65 -0.1
194,972 + EX31_RS18145 0.65 -1.4
194,972 + EX31_RS18145 0.65 +2.6
194,972 + EX31_RS18145 0.65 -0.1
194,972 + EX31_RS18145 0.65 +0.8
194,973 - EX31_RS18145 0.65 -0.5
195,045 + EX31_RS18145 0.71 +0.0
195,079 + EX31_RS18145 0.74 -0.3
195,130 + EX31_RS18145 0.78 -0.8
195,158 + EX31_RS18145 0.81 -0.2
195,158 + EX31_RS18145 0.81 +0.6
195,218 + EX31_RS18145 0.86 +1.2
195,218 + EX31_RS18145 0.86 -1.2
195,221 + EX31_RS18145 0.86 -1.2
195,222 - EX31_RS18145 0.86 +0.8
195,271 + -2.8
195,271 + -0.0
195,271 + -0.8
195,301 - -0.4
195,320 + +0.2
195,460 - -0.5
195,460 - -1.5
195,472 + -0.2
195,473 - -1.0
195,473 - -0.7
195,473 - +0.8
195,473 - +2.4
195,473 - -2.2
195,517 - -0.9
195,559 - EX31_RS18150 0.13 +1.4
195,559 - EX31_RS18150 0.13 +1.4
195,587 - EX31_RS18150 0.17 +2.8
195,587 - EX31_RS18150 0.17 +1.1
195,697 - EX31_RS18150 0.34 -0.8
195,697 - EX31_RS18150 0.34 +0.2
195,983 - EX31_RS18150 0.78 +0.8
196,060 - +0.2
196,104 + +0.2
196,105 - +1.2
196,107 + +0.6
196,107 + +0.3
196,107 + +0.3
196,108 - -0.9
196,108 - +0.3
196,163 - +0.3
196,163 - -0.8
196,167 - -1.5
196,167 - -0.9
196,167 - +0.8
196,215 + -0.6
196,216 - -0.0
196,229 + -1.0
196,230 - EX31_RS18155 0.10 +0.2
196,234 + EX31_RS18155 0.11 +0.5
196,235 - EX31_RS18155 0.11 -0.8
196,235 - EX31_RS18155 0.11 +1.7
196,235 - EX31_RS18155 0.11 +0.8
196,328 + EX31_RS18155 0.28 +0.8
196,328 + EX31_RS18155 0.28 -0.2
196,328 + EX31_RS18155 0.28 -0.2
196,328 + EX31_RS18155 0.28 +4.0
196,329 - EX31_RS18155 0.28 +0.3
196,329 - EX31_RS18155 0.28 +0.6

Or see this region's nucleotide sequence