Strain Fitness in Rahnella sp. WP5 around EX31_RS18015

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
158,657	-		EX31_RS18005	0.51	+0.8
158,703	+		EX31_RS18005	0.58	-0.8
158,728	+		EX31_RS18005	0.62	-0.6
158,728	+		EX31_RS18005	0.62	+0.2
158,746	+		EX31_RS18005	0.64	-1.0
158,746	+		EX31_RS18005	0.64	+0.2
158,746	+		EX31_RS18005	0.64	-0.2
158,777	+		EX31_RS18005	0.69	-0.2
158,777	+		EX31_RS18005	0.69	+0.3
158,882	+		EX31_RS18005	0.85	+0.8
158,882	+		EX31_RS18005	0.85	+0.6
158,882	+		EX31_RS18005	0.85	-0.6
158,883	-		EX31_RS18005	0.85	+1.8
158,938	-				+0.1
158,938	-				+0.8
158,946	+				-0.2
158,983	+				-1.8
158,983	+				+0.3
158,983	+				+0.6
159,021	+				+1.5
159,035	+				-3.3
159,036	-				-2.2
159,042	+				+1.8
159,077	-				-0.5
159,097	+				+0.1
159,097	+				+2.1
159,098	-				-1.2
159,098	-				+0.0
159,106	+				-0.6
159,107	-				-1.2
159,138	+				+0.9
159,138	+				+1.6
159,138	+				+0.4
159,138	+				-0.5
159,138	+				+1.3
159,138	+				+0.9
159,139	-				-1.4
159,139	-				-0.2
159,139	-				-0.2
159,139	-				+1.0
159,140	+				-0.6
159,140	+				+1.5
159,140	+				+0.8
159,140	+				+2.8
159,140	+				-0.0
159,141	-				+0.2
159,141	-				+2.3
159,141	-				+3.3
159,192	+		EX31_RS18010	0.20	-0.2
159,226	+		EX31_RS18010	0.27	-2.7
159,226	+		EX31_RS18010	0.27	+1.4
159,227	-		EX31_RS18010	0.27	+0.8
159,274	-		EX31_RS18010	0.38	+1.5
159,290	+		EX31_RS18010	0.41	+0.2
159,291	-		EX31_RS18010	0.41	-0.2
159,432	+		EX31_RS18010	0.72	+0.5
159,559	+				-0.9
159,560	-				-1.6
159,626	-				+2.6
159,626	-				+1.5
159,626	-				+0.6
159,629	+				+0.8
159,673	+				+0.1
159,674	-				+0.3
159,743	+				+1.0
159,744	-				+0.1
159,744	-				+1.0
159,744	-				-1.2
159,744	-				+2.0
159,744	-				+0.0
159,744	-				+0.8
159,744	-				-1.8
159,744	-				+1.3
159,749	-				+0.4
159,793	+				+0.8
159,865	-		EX31_RS18015	0.12	+3.1
159,891	+		EX31_RS18015	0.13	+1.8
159,921	+		EX31_RS18015	0.14	+1.8
159,922	-		EX31_RS18015	0.14	+1.2
159,922	-		EX31_RS18015	0.14	+0.8
159,922	-		EX31_RS18015	0.14	+1.6
159,996	+		EX31_RS18015	0.18	-1.4
159,996	+		EX31_RS18015	0.18	-0.2
159,997	-		EX31_RS18015	0.18	+0.8
160,144	-		EX31_RS18015	0.25	+0.6
160,144	-		EX31_RS18015	0.25	-1.9
160,179	-		EX31_RS18015	0.27	+1.8
160,186	-		EX31_RS18015	0.27	+1.3
160,305	+		EX31_RS18015	0.33	+0.8
160,306	-		EX31_RS18015	0.33	+1.9
160,306	-		EX31_RS18015	0.33	+1.9
160,306	-		EX31_RS18015	0.33	+2.3
160,306	-		EX31_RS18015	0.33	+1.0
160,383	+		EX31_RS18015	0.37	-0.2
160,384	-		EX31_RS18015	0.37	+0.8
160,423	-		EX31_RS18015	0.39	+0.8
160,423	-		EX31_RS18015	0.39	-0.5
160,440	+		EX31_RS18015	0.40	-1.8
160,519	-		EX31_RS18015	0.43	+0.8
160,528	-		EX31_RS18015	0.44	+0.9
160,528	-		EX31_RS18015	0.44	+0.3
160,528	-		EX31_RS18015	0.44	-1.1
160,590	+		EX31_RS18015	0.47	-0.8
160,591	-		EX31_RS18015	0.47	+1.8
160,758	+		EX31_RS18015	0.55	+1.8
160,885	-		EX31_RS18015	0.61	+0.2
161,020	-		EX31_RS18015	0.68	+1.0
161,185	-		EX31_RS18015	0.76	+0.5
161,185	-		EX31_RS18015	0.76	+1.2
161,217	-		EX31_RS18015	0.77	+1.4
161,245	-		EX31_RS18015	0.79	-0.8
161,378	-		EX31_RS18015	0.85	+0.3
161,378	-		EX31_RS18015	0.85	+1.5
161,435	+		EX31_RS18015	0.88	+0.2
161,435	+		EX31_RS18015	0.88	+0.8
161,436	-		EX31_RS18015	0.88	-0.4
161,436	-		EX31_RS18015	0.88	+0.5
161,436	-		EX31_RS18015	0.88	+0.8
161,442	-		EX31_RS18015	0.88	+0.2
161,553	+				+0.8
161,553	+				+0.3
161,554	-				+1.2
161,562	+				+1.9
161,563	-				+2.0
161,563	-				+1.4
161,563	-				+0.8
161,576	+				+1.0
161,576	+				+1.2
161,577	-				+2.1
161,577	-				+0.5
161,577	-				+0.0
161,577	-				+3.2
161,577	-				+0.3
161,631	+				-1.9
161,632	-				+1.5
161,632	-				-0.5
161,633	+				-1.6
161,634	-				+0.0
161,634	-				-0.0
161,634	-				+0.3
161,634	-				+0.5
161,634	-				+0.8
161,634	-				+0.5
161,683	-				-0.2
161,721	-				-0.0
161,721	-				-0.5
161,721	-				-0.0
161,721	-				+0.1
161,736	+				-0.8
161,737	-				-0.0
161,745	-				+0.8
161,745	-				+0.3
161,790	+				+0.8
161,790	+				-0.2
161,791	-				+2.0
161,791	-				+0.8
161,791	-				+0.3
161,791	-				-1.0
161,797	+				+1.1
161,797	+				-1.6
161,797	+				+1.8
161,797	+				-0.5
161,797	+				-0.9
161,798	-				-0.2
161,798	-				-0.7
161,798	-				+0.8
161,798	-				+1.0
161,809	-				-1.9
161,836	+				+0.2
161,836	+				+0.8
161,869	+				-0.2
161,877	-				+1.0
161,883	-				+0.8
161,893	+				+1.0
161,893	+				+1.8
161,894	-				+0.8
161,931	-		EX31_RS18020	0.16	+0.8
161,957	+		EX31_RS18020	0.21	+1.3
162,028	+		EX31_RS18020	0.37	-1.2
162,029	-		EX31_RS18020	0.37	+2.3
162,029	-		EX31_RS18020	0.37	+0.1
162,029	-		EX31_RS18020	0.37	+0.8
162,029	-		EX31_RS18020	0.37	+0.2
162,029	-		EX31_RS18020	0.37	+2.8
162,029	-		EX31_RS18020	0.37	-2.4
162,083	+		EX31_RS18020	0.48	-1.6
162,127	+		EX31_RS18020	0.58	+0.7
162,164	+		EX31_RS18020	0.66	+0.2
162,164	+		EX31_RS18020	0.66	-0.7
162,172	+		EX31_RS18020	0.68	+0.9
162,172	+		EX31_RS18020	0.68	-1.0
162,173	-		EX31_RS18020	0.68	+2.0
162,173	-		EX31_RS18020	0.68	+0.8
162,204	-		EX31_RS18020	0.75	-0.4
162,233	-		EX31_RS18020	0.81	+0.3
162,281	+				-0.1
162,281	+				+0.2
162,282	-				+1.3
162,348	+				-0.8
162,349	-				-0.9
162,349	-				+1.0
162,372	-				-2.2
162,394	-				+1.0
162,394	-				-0.8
162,399	+				+1.5
162,399	+				+1.0
162,399	+				-0.1
162,399	+				-2.7
162,399	+				-1.6
162,399	+				+1.3
162,399	+				+1.9
162,400	-				-0.6
162,401	+				+2.1
162,401	+				+0.0
162,401	+				+1.0
162,411	-				+1.9
162,411	-				+0.9
162,610	+		EX31_RS18025	0.12	+0.3
162,610	+		EX31_RS18025	0.12	-0.8
162,610	+		EX31_RS18025	0.12	+1.3
162,611	-		EX31_RS18025	0.12	+2.1
162,616	+		EX31_RS18025	0.12	+1.5
162,616	+		EX31_RS18025	0.12	+1.5
162,617	-		EX31_RS18025	0.12	-1.3
162,617	-		EX31_RS18025	0.12	+0.2