Strain Fitness in Rahnella sp. WP5 around EX31_RS17850

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17845 and EX31_RS17850 are separated by 4 nucleotidesEX31_RS17850 and EX31_RS17855 are separated by 13 nucleotides EX31_RS17845: EX31_RS17845 - cellulase family glycosylhydrolase, at 125,333 to 126,544 _RS17845 EX31_RS17850: EX31_RS17850 - sugar ABC transporter permease, at 126,549 to 127,400 _RS17850 EX31_RS17855: EX31_RS17855 - sugar ABC transporter permease, at 127,414 to 128,715 _RS17855 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 125.651 kb on - strand, within EX31_RS17845at 125.651 kb on - strand, within EX31_RS17845at 125.691 kb on + strand, within EX31_RS17845at 125.692 kb on - strand, within EX31_RS17845at 125.748 kb on + strand, within EX31_RS17845at 125.748 kb on + strand, within EX31_RS17845at 125.749 kb on - strand, within EX31_RS17845at 125.753 kb on - strand, within EX31_RS17845at 125.754 kb on + strand, within EX31_RS17845at 125.755 kb on - strand, within EX31_RS17845at 125.778 kb on + strand, within EX31_RS17845at 125.778 kb on + strand, within EX31_RS17845at 125.779 kb on - strand, within EX31_RS17845at 125.779 kb on - strand, within EX31_RS17845at 126.067 kb on - strand, within EX31_RS17845at 126.182 kb on - strand, within EX31_RS17845at 126.300 kb on + strand, within EX31_RS17845at 126.301 kb on - strand, within EX31_RS17845at 126.301 kb on - strand, within EX31_RS17845at 126.305 kb on - strand, within EX31_RS17845at 126.404 kb on - strand, within EX31_RS17845at 126.550 kb on + strandat 126.609 kb on + strandat 126.652 kb on + strand, within EX31_RS17850at 126.652 kb on + strand, within EX31_RS17850at 126.653 kb on - strand, within EX31_RS17850at 126.653 kb on - strand, within EX31_RS17850at 126.653 kb on - strand, within EX31_RS17850at 126.653 kb on - strand, within EX31_RS17850at 126.662 kb on - strand, within EX31_RS17850at 126.662 kb on - strand, within EX31_RS17850at 126.694 kb on + strand, within EX31_RS17850at 126.708 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.715 kb on + strand, within EX31_RS17850at 126.716 kb on - strand, within EX31_RS17850at 126.716 kb on - strand, within EX31_RS17850at 126.716 kb on - strand, within EX31_RS17850at 126.716 kb on - strand, within EX31_RS17850at 126.716 kb on - strand, within EX31_RS17850at 126.719 kb on + strand, within EX31_RS17850at 126.732 kb on + strand, within EX31_RS17850at 126.733 kb on - strand, within EX31_RS17850at 126.905 kb on - strand, within EX31_RS17850at 126.905 kb on - strand, within EX31_RS17850at 126.920 kb on - strand, within EX31_RS17850at 126.920 kb on - strand, within EX31_RS17850at 126.980 kb on + strand, within EX31_RS17850at 127.047 kb on + strand, within EX31_RS17850at 127.106 kb on - strand, within EX31_RS17850at 127.106 kb on - strand, within EX31_RS17850at 127.313 kb on + strand, within EX31_RS17850at 127.345 kb on + strandat 127.380 kb on - strandat 127.434 kb on + strandat 127.545 kb on + strand, within EX31_RS17855at 127.546 kb on - strand, within EX31_RS17855at 127.547 kb on + strand, within EX31_RS17855at 127.547 kb on + strand, within EX31_RS17855at 127.548 kb on - strand, within EX31_RS17855at 127.548 kb on - strand, within EX31_RS17855at 127.622 kb on + strand, within EX31_RS17855at 127.626 kb on + strand, within EX31_RS17855at 127.630 kb on - strand, within EX31_RS17855at 127.655 kb on + strand, within EX31_RS17855at 127.655 kb on + strand, within EX31_RS17855at 127.669 kb on - strand, within EX31_RS17855at 127.685 kb on + strand, within EX31_RS17855at 127.685 kb on + strand, within EX31_RS17855at 127.688 kb on - strand, within EX31_RS17855at 127.757 kb on + strand, within EX31_RS17855at 127.757 kb on + strand, within EX31_RS17855at 127.759 kb on + strand, within EX31_RS17855at 127.759 kb on + strand, within EX31_RS17855at 127.760 kb on - strand, within EX31_RS17855at 127.760 kb on - strand, within EX31_RS17855at 127.784 kb on - strand, within EX31_RS17855at 127.791 kb on + strand, within EX31_RS17855at 127.882 kb on - strand, within EX31_RS17855at 127.995 kb on + strand, within EX31_RS17855at 127.995 kb on + strand, within EX31_RS17855at 127.995 kb on + strand, within EX31_RS17855at 127.995 kb on + strand, within EX31_RS17855at 128.070 kb on + strand, within EX31_RS17855at 128.071 kb on - strand, within EX31_RS17855at 128.071 kb on - strand, within EX31_RS17855at 128.071 kb on - strand, within EX31_RS17855at 128.071 kb on - strand, within EX31_RS17855at 128.119 kb on + strand, within EX31_RS17855at 128.120 kb on - strand, within EX31_RS17855at 128.120 kb on - strand, within EX31_RS17855at 128.120 kb on - strand, within EX31_RS17855at 128.145 kb on + strand, within EX31_RS17855at 128.160 kb on + strand, within EX31_RS17855at 128.166 kb on + strand, within EX31_RS17855at 128.255 kb on - strand, within EX31_RS17855at 128.255 kb on - strand, within EX31_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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125,651 - EX31_RS17845 0.26 -0.3
125,651 - EX31_RS17845 0.26 -1.3
125,691 + EX31_RS17845 0.30 -0.1
125,692 - EX31_RS17845 0.30 +1.6
125,748 + EX31_RS17845 0.34 +0.5
125,748 + EX31_RS17845 0.34 -0.1
125,749 - EX31_RS17845 0.34 +0.2
125,753 - EX31_RS17845 0.35 +1.2
125,754 + EX31_RS17845 0.35 -0.3
125,755 - EX31_RS17845 0.35 +0.9
125,778 + EX31_RS17845 0.37 +1.0
125,778 + EX31_RS17845 0.37 -1.1
125,779 - EX31_RS17845 0.37 -1.1
125,779 - EX31_RS17845 0.37 -0.2
126,067 - EX31_RS17845 0.61 +2.3
126,182 - EX31_RS17845 0.70 +3.1
126,300 + EX31_RS17845 0.80 +0.7
126,301 - EX31_RS17845 0.80 -0.7
126,301 - EX31_RS17845 0.80 +0.3
126,305 - EX31_RS17845 0.80 -1.6
126,404 - EX31_RS17845 0.88 -0.6
126,550 + -1.4
126,609 + +0.2
126,652 + EX31_RS17850 0.12 +1.7
126,652 + EX31_RS17850 0.12 +0.5
126,653 - EX31_RS17850 0.12 +0.7
126,653 - EX31_RS17850 0.12 +0.7
126,653 - EX31_RS17850 0.12 +0.2
126,653 - EX31_RS17850 0.12 +0.4
126,662 - EX31_RS17850 0.13 -1.1
126,662 - EX31_RS17850 0.13 -0.5
126,694 + EX31_RS17850 0.17 -0.1
126,708 + EX31_RS17850 0.19 +1.5
126,715 + EX31_RS17850 0.19 -0.4
126,715 + EX31_RS17850 0.19 -0.5
126,715 + EX31_RS17850 0.19 +1.7
126,715 + EX31_RS17850 0.19 +1.4
126,715 + EX31_RS17850 0.19 +0.3
126,715 + EX31_RS17850 0.19 +0.4
126,716 - EX31_RS17850 0.20 +0.9
126,716 - EX31_RS17850 0.20 +0.0
126,716 - EX31_RS17850 0.20 +1.6
126,716 - EX31_RS17850 0.20 +3.3
126,716 - EX31_RS17850 0.20 +0.4
126,719 + EX31_RS17850 0.20 -0.3
126,732 + EX31_RS17850 0.21 +0.7
126,733 - EX31_RS17850 0.22 +1.7
126,905 - EX31_RS17850 0.42 +1.7
126,905 - EX31_RS17850 0.42 +0.7
126,920 - EX31_RS17850 0.44 +0.0
126,920 - EX31_RS17850 0.44 +1.2
126,980 + EX31_RS17850 0.51 -0.3
127,047 + EX31_RS17850 0.58 +2.2
127,106 - EX31_RS17850 0.65 +1.2
127,106 - EX31_RS17850 0.65 +0.9
127,313 + EX31_RS17850 0.90 +1.7
127,345 + -0.6
127,380 - -1.2
127,434 + -0.3
127,545 + EX31_RS17855 0.10 +0.7
127,546 - EX31_RS17855 0.10 -1.1
127,547 + EX31_RS17855 0.10 -0.7
127,547 + EX31_RS17855 0.10 +0.8
127,548 - EX31_RS17855 0.10 -0.1
127,548 - EX31_RS17855 0.10 +0.7
127,622 + EX31_RS17855 0.16 +0.7
127,626 + EX31_RS17855 0.16 -0.8
127,630 - EX31_RS17855 0.17 -1.2
127,655 + EX31_RS17855 0.19 +0.2
127,655 + EX31_RS17855 0.19 -1.3
127,669 - EX31_RS17855 0.20 -0.3
127,685 + EX31_RS17855 0.21 +0.7
127,685 + EX31_RS17855 0.21 -2.3
127,688 - EX31_RS17855 0.21 +0.7
127,757 + EX31_RS17855 0.26 +0.6
127,757 + EX31_RS17855 0.26 +0.7
127,759 + EX31_RS17855 0.26 -2.1
127,759 + EX31_RS17855 0.26 +1.7
127,760 - EX31_RS17855 0.27 +1.2
127,760 - EX31_RS17855 0.27 +0.7
127,784 - EX31_RS17855 0.28 +0.1
127,791 + EX31_RS17855 0.29 -0.4
127,882 - EX31_RS17855 0.36 -0.3
127,995 + EX31_RS17855 0.45 +0.2
127,995 + EX31_RS17855 0.45 +1.3
127,995 + EX31_RS17855 0.45 +0.7
127,995 + EX31_RS17855 0.45 +0.1
128,070 + EX31_RS17855 0.50 -0.8
128,071 - EX31_RS17855 0.50 +0.1
128,071 - EX31_RS17855 0.50 +2.1
128,071 - EX31_RS17855 0.50 -0.8
128,071 - EX31_RS17855 0.50 +1.2
128,119 + EX31_RS17855 0.54 +1.3
128,120 - EX31_RS17855 0.54 +1.2
128,120 - EX31_RS17855 0.54 +0.7
128,120 - EX31_RS17855 0.54 -1.3
128,145 + EX31_RS17855 0.56 -0.1
128,160 + EX31_RS17855 0.57 +0.7
128,166 + EX31_RS17855 0.58 +0.6
128,255 - EX31_RS17855 0.65 -2.3
128,255 - EX31_RS17855 0.65 -0.8

Or see this region's nucleotide sequence