Strain Fitness in Rahnella sp. WP5 around EX31_RS17785

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
112,662	+				+0.7
112,662	+				+1.5
112,663	-				+0.2
112,890	+		EX31_RS17780	0.27	+1.0
112,922	+		EX31_RS17780	0.31	+1.2
112,923	-		EX31_RS17780	0.31	+0.1
113,081	+		EX31_RS17780	0.49	+1.7
113,081	+		EX31_RS17780	0.49	+0.0
113,081	+		EX31_RS17780	0.49	-0.6
113,081	+		EX31_RS17780	0.49	+0.3
113,081	+		EX31_RS17780	0.49	-0.5
113,081	+		EX31_RS17780	0.49	+0.2
113,082	-		EX31_RS17780	0.49	-1.8
113,082	-		EX31_RS17780	0.49	-1.3
113,082	-		EX31_RS17780	0.49	+0.7
113,082	-		EX31_RS17780	0.49	+1.1
113,082	-		EX31_RS17780	0.49	-0.6
113,082	-		EX31_RS17780	0.49	+0.7
113,099	+		EX31_RS17780	0.51	+2.1
113,099	+		EX31_RS17780	0.51	+0.1
113,099	+		EX31_RS17780	0.51	-0.3
113,099	+		EX31_RS17780	0.51	+0.3
113,099	+		EX31_RS17780	0.51	+1.1
113,099	+		EX31_RS17780	0.51	-0.6
113,099	+		EX31_RS17780	0.51	-0.4
113,100	-		EX31_RS17780	0.51	-0.5
113,100	-		EX31_RS17780	0.51	+0.5
113,100	-		EX31_RS17780	0.51	-0.3
113,100	-		EX31_RS17780	0.51	-0.1
113,106	+		EX31_RS17780	0.52	-0.6
113,106	+		EX31_RS17780	0.52	+0.9
113,106	+		EX31_RS17780	0.52	-0.3
113,106	+		EX31_RS17780	0.52	+1.3
113,106	+		EX31_RS17780	0.52	-0.3
113,106	+		EX31_RS17780	0.52	+1.1
113,106	+		EX31_RS17780	0.52	+0.4
113,106	+		EX31_RS17780	0.52	+1.3
113,106	+		EX31_RS17780	0.52	-0.1
113,106	+		EX31_RS17780	0.52	+1.2
113,106	+		EX31_RS17780	0.52	+0.1
113,107	-		EX31_RS17780	0.52	-1.3
113,107	-		EX31_RS17780	0.52	-1.1
113,107	-		EX31_RS17780	0.52	-1.4
113,107	-		EX31_RS17780	0.52	+0.2
113,107	-		EX31_RS17780	0.52	-0.6
113,107	-		EX31_RS17780	0.52	-0.4
113,107	-		EX31_RS17780	0.52	+0.3
113,107	-		EX31_RS17780	0.52	-0.5
113,107	-		EX31_RS17780	0.52	+1.5
113,107	-		EX31_RS17780	0.52	+0.9
113,108	+		EX31_RS17780	0.52	-0.6
113,108	+		EX31_RS17780	0.52	+1.7
113,109	-		EX31_RS17780	0.52	+1.7
113,109	-		EX31_RS17780	0.52	-1.1
113,316	+		EX31_RS17780	0.75	+0.0
113,316	+		EX31_RS17780	0.75	-1.1
113,316	+		EX31_RS17780	0.75	+0.4
113,317	-		EX31_RS17780	0.75	-2.3
113,317	-		EX31_RS17780	0.75	-0.6
113,317	-		EX31_RS17780	0.75	+0.7
113,330	+		EX31_RS17780	0.77	-1.4
113,331	-		EX31_RS17780	0.77	+1.7
113,409	-		EX31_RS17780	0.86	+0.9
113,434	+		EX31_RS17780	0.89	+0.2
113,435	-		EX31_RS17780	0.89	-0.4
113,465	+				-0.8
113,465	+				+1.2
113,465	+				+2.1
113,466	-				+2.1
113,466	-				+1.4
113,581	-				+1.3
113,597	+				+0.7
113,620	+				-0.3
113,620	+				-0.5
113,620	+				+1.7
113,620	+				+0.0
113,620	+				+0.9
113,620	+				-1.3
113,620	+				-0.3
113,620	+				+0.2
113,621	-				+0.7
113,621	-				+1.3
113,621	-				+1.5
113,721	+				+0.2
113,806	+		EX31_RS17785	0.17	+2.1
113,910	+		EX31_RS17785	0.26	+0.2
113,910	+		EX31_RS17785	0.26	+0.9
113,911	-		EX31_RS17785	0.26	+2.3
114,189	-		EX31_RS17785	0.52	-1.3
114,199	+		EX31_RS17785	0.53	+0.2
114,272	+		EX31_RS17785	0.59	-0.8
114,302	+		EX31_RS17785	0.62	+0.2
114,371	+		EX31_RS17785	0.68	+0.2
114,371	+		EX31_RS17785	0.68	+1.1
114,371	+		EX31_RS17785	0.68	+1.3
114,372	-		EX31_RS17785	0.69	+0.3
114,443	+		EX31_RS17785	0.75	+1.4
114,443	+		EX31_RS17785	0.75	+0.3
114,443	+		EX31_RS17785	0.75	-0.6
114,626	+				-0.4
114,626	+				-0.6
114,626	+				-0.8
114,626	+				+0.4
114,626	+				-2.3
114,626	+				+1.5
114,626	+				-0.8
114,626	+				+0.5
114,626	+				-0.6
114,626	+				-0.1
114,626	+				-0.3
114,626	+				+1.2
114,626	+				+0.7
114,626	+				+0.7
114,626	+				+0.3
114,626	+				+0.7
114,626	+				-1.6
114,626	+				-1.8
114,626	+				+1.0
114,626	+				+0.3
114,626	+				-0.8
114,626	+				-1.8
114,626	+				-0.2
114,627	-				-0.5
114,627	-				+0.7
114,627	-				+0.2
114,627	-				+0.3
114,627	-				+0.7
114,627	-				-0.8
114,627	-				-0.1
114,627	-				+1.3
114,627	-				-1.3
114,627	-				+2.2
114,627	-				+0.7
114,627	-				+1.7
114,630	+				+1.3
114,630	+				+1.7
114,630	+				+0.3
114,630	+				+1.4
114,630	+				+1.1
114,630	+				+2.3
114,630	+				-0.1
114,631	-				+1.3
114,631	-				-2.3
114,631	-				+1.3
114,631	-				+0.2
114,631	-				+0.7
114,631	-				+1.0
114,647	+				+1.0
114,647	+				-0.5
114,648	-				+2.0
114,648	-				+1.4
114,648	-				-0.3
114,692	-				-1.4
114,694	+				+0.4
114,694	+				+1.4
114,695	-				+0.2
114,695	-				-0.3
114,695	-				+0.2
114,695	-				+0.6
114,695	-				+1.3
114,695	-				+0.4
114,786	+		EX31_RS17790	0.19	+0.9
114,925	+		EX31_RS17790	0.67	+0.2
114,925	+		EX31_RS17790	0.67	-2.3
114,926	-		EX31_RS17790	0.67	-0.5
114,926	-		EX31_RS17790	0.67	-3.4
114,972	+		EX31_RS17790	0.83	+3.1
115,014	+				+0.2
115,014	+				-1.1
115,014	+				-0.3
115,014	+				+0.7
115,015	-				+1.2
115,015	-				-0.8
115,038	+				-0.7
115,038	+				+0.3
115,038	+				+1.2
115,073	+				+0.0
115,086	+				+0.7
115,086	+				+0.7
115,087	-				-0.5
115,087	-				-0.5
115,087	-				-0.1
115,087	-				+3.2
115,167	-		EX31_RS17795	0.17	+2.1
115,192	+		EX31_RS17795	0.20	+0.7
115,192	+		EX31_RS17795	0.20	+0.5
115,489	+		EX31_RS17795	0.54	+0.7
115,489	+		EX31_RS17795	0.54	+1.7
115,490	-		EX31_RS17795	0.54	+0.2
115,538	-		EX31_RS17795	0.59	+2.7
115,600	+		EX31_RS17795	0.66	+2.4
115,600	+		EX31_RS17795	0.66	+0.4
115,600	+		EX31_RS17795	0.66	-0.8
115,710	+		EX31_RS17795	0.79	-0.1