Strain Fitness in Rahnella sp. WP5 around EX31_RS17775

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17770 and EX31_RS17775 are separated by 371 nucleotidesEX31_RS17775 and EX31_RS17780 are separated by 36 nucleotides EX31_RS17770: EX31_RS17770 - sensor histidine kinase, at 109,207 to 110,874 _RS17770 EX31_RS17775: EX31_RS17775 - 2-hydroxycarboxylate transporter family protein, at 111,246 to 112,610 _RS17775 EX31_RS17780: EX31_RS17780 - fumarylacetoacetate hydrolase family protein, at 112,647 to 113,534 _RS17780 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2 3at 110.571 kb on - strand, within EX31_RS17770at 110.571 kb on - strand, within EX31_RS17770at 110.591 kb on - strand, within EX31_RS17770at 110.599 kb on - strand, within EX31_RS17770at 110.616 kb on + strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.617 kb on - strand, within EX31_RS17770at 110.618 kb on + strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.619 kb on - strand, within EX31_RS17770at 110.654 kb on - strand, within EX31_RS17770at 111.311 kb on - strandat 111.400 kb on + strand, within EX31_RS17775at 111.561 kb on + strand, within EX31_RS17775at 111.561 kb on + strand, within EX31_RS17775at 111.609 kb on + strand, within EX31_RS17775at 111.610 kb on - strand, within EX31_RS17775at 111.610 kb on - strand, within EX31_RS17775at 111.612 kb on - strand, within EX31_RS17775at 111.612 kb on - strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.630 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.636 kb on + strand, within EX31_RS17775at 111.637 kb on - strand, within EX31_RS17775at 111.707 kb on + strand, within EX31_RS17775at 111.707 kb on + strand, within EX31_RS17775at 111.884 kb on + strand, within EX31_RS17775at 111.899 kb on - strand, within EX31_RS17775at 112.073 kb on + strand, within EX31_RS17775at 112.074 kb on - strand, within EX31_RS17775at 112.125 kb on + strand, within EX31_RS17775at 112.125 kb on + strand, within EX31_RS17775at 112.126 kb on - strand, within EX31_RS17775at 112.126 kb on - strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.127 kb on + strand, within EX31_RS17775at 112.128 kb on - strand, within EX31_RS17775at 112.144 kb on + strand, within EX31_RS17775at 112.254 kb on + strand, within EX31_RS17775at 112.352 kb on + strand, within EX31_RS17775at 112.544 kb on + strandat 112.662 kb on + strandat 112.662 kb on + strandat 112.663 kb on - strandat 112.890 kb on + strand, within EX31_RS17780at 112.922 kb on + strand, within EX31_RS17780at 112.923 kb on - strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.081 kb on + strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.082 kb on - strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.099 kb on + strand, within EX31_RS17780at 113.100 kb on - strand, within EX31_RS17780at 113.100 kb on - strand, within EX31_RS17780at 113.100 kb on - strand, within EX31_RS17780at 113.100 kb on - strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.106 kb on + strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.107 kb on - strand, within EX31_RS17780at 113.108 kb on + strand, within EX31_RS17780at 113.108 kb on + strand, within EX31_RS17780at 113.109 kb on - strand, within EX31_RS17780at 113.109 kb on - strand, within EX31_RS17780at 113.316 kb on + strand, within EX31_RS17780at 113.316 kb on + strand, within EX31_RS17780at 113.316 kb on + strand, within EX31_RS17780at 113.317 kb on - strand, within EX31_RS17780at 113.317 kb on - strand, within EX31_RS17780at 113.317 kb on - strand, within EX31_RS17780at 113.330 kb on + strand, within EX31_RS17780at 113.331 kb on - strand, within EX31_RS17780at 113.409 kb on - strand, within EX31_RS17780at 113.434 kb on + strand, within EX31_RS17780at 113.435 kb on - strand, within EX31_RS17780at 113.465 kb on + strandat 113.465 kb on + strandat 113.465 kb on + strandat 113.466 kb on - strandat 113.466 kb on - strandat 113.581 kb on - strandat 113.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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110,571 - EX31_RS17770 0.82 +0.4
110,571 - EX31_RS17770 0.82 -1.1
110,591 - EX31_RS17770 0.83 +0.3
110,599 - EX31_RS17770 0.83 +0.6
110,616 + EX31_RS17770 0.84 +0.7
110,617 - EX31_RS17770 0.85 +0.3
110,617 - EX31_RS17770 0.85 -0.4
110,617 - EX31_RS17770 0.85 -2.1
110,617 - EX31_RS17770 0.85 +0.5
110,618 + EX31_RS17770 0.85 +0.2
110,619 - EX31_RS17770 0.85 -0.2
110,619 - EX31_RS17770 0.85 +0.9
110,619 - EX31_RS17770 0.85 +0.1
110,654 - EX31_RS17770 0.87 +0.2
111,311 - +2.2
111,400 + EX31_RS17775 0.11 -1.3
111,561 + EX31_RS17775 0.23 -1.1
111,561 + EX31_RS17775 0.23 +0.1
111,609 + EX31_RS17775 0.27 +0.1
111,610 - EX31_RS17775 0.27 -0.3
111,610 - EX31_RS17775 0.27 +1.7
111,612 - EX31_RS17775 0.27 +0.7
111,612 - EX31_RS17775 0.27 +0.7
111,630 + EX31_RS17775 0.28 +2.9
111,630 + EX31_RS17775 0.28 -0.5
111,630 + EX31_RS17775 0.28 +0.0
111,636 + EX31_RS17775 0.29 +1.7
111,636 + EX31_RS17775 0.29 -0.3
111,636 + EX31_RS17775 0.29 +0.7
111,637 - EX31_RS17775 0.29 +1.0
111,707 + EX31_RS17775 0.34 +0.7
111,707 + EX31_RS17775 0.34 -0.8
111,884 + EX31_RS17775 0.47 -1.4
111,899 - EX31_RS17775 0.48 +0.4
112,073 + EX31_RS17775 0.61 +1.3
112,074 - EX31_RS17775 0.61 +0.2
112,125 + EX31_RS17775 0.64 -1.1
112,125 + EX31_RS17775 0.64 -0.3
112,126 - EX31_RS17775 0.64 -1.3
112,126 - EX31_RS17775 0.64 -0.8
112,127 + EX31_RS17775 0.65 -0.7
112,127 + EX31_RS17775 0.65 +0.2
112,127 + EX31_RS17775 0.65 -0.3
112,127 + EX31_RS17775 0.65 -2.3
112,127 + EX31_RS17775 0.65 +1.3
112,127 + EX31_RS17775 0.65 +0.4
112,128 - EX31_RS17775 0.65 +0.7
112,144 + EX31_RS17775 0.66 -1.6
112,254 + EX31_RS17775 0.74 -0.5
112,352 + EX31_RS17775 0.81 -0.3
112,544 + -1.1
112,662 + +0.7
112,662 + +1.5
112,663 - +0.2
112,890 + EX31_RS17780 0.27 +1.0
112,922 + EX31_RS17780 0.31 +1.2
112,923 - EX31_RS17780 0.31 +0.1
113,081 + EX31_RS17780 0.49 +1.7
113,081 + EX31_RS17780 0.49 +0.0
113,081 + EX31_RS17780 0.49 -0.6
113,081 + EX31_RS17780 0.49 +0.3
113,081 + EX31_RS17780 0.49 -0.5
113,081 + EX31_RS17780 0.49 +0.2
113,082 - EX31_RS17780 0.49 -1.8
113,082 - EX31_RS17780 0.49 -1.3
113,082 - EX31_RS17780 0.49 +0.7
113,082 - EX31_RS17780 0.49 +1.1
113,082 - EX31_RS17780 0.49 -0.6
113,082 - EX31_RS17780 0.49 +0.7
113,099 + EX31_RS17780 0.51 +2.1
113,099 + EX31_RS17780 0.51 +0.1
113,099 + EX31_RS17780 0.51 -0.3
113,099 + EX31_RS17780 0.51 +0.3
113,099 + EX31_RS17780 0.51 +1.1
113,099 + EX31_RS17780 0.51 -0.6
113,099 + EX31_RS17780 0.51 -0.4
113,100 - EX31_RS17780 0.51 -0.5
113,100 - EX31_RS17780 0.51 +0.5
113,100 - EX31_RS17780 0.51 -0.3
113,100 - EX31_RS17780 0.51 -0.1
113,106 + EX31_RS17780 0.52 -0.6
113,106 + EX31_RS17780 0.52 +0.9
113,106 + EX31_RS17780 0.52 -0.3
113,106 + EX31_RS17780 0.52 +1.3
113,106 + EX31_RS17780 0.52 -0.3
113,106 + EX31_RS17780 0.52 +1.1
113,106 + EX31_RS17780 0.52 +0.4
113,106 + EX31_RS17780 0.52 +1.3
113,106 + EX31_RS17780 0.52 -0.1
113,106 + EX31_RS17780 0.52 +1.2
113,106 + EX31_RS17780 0.52 +0.1
113,107 - EX31_RS17780 0.52 -1.3
113,107 - EX31_RS17780 0.52 -1.1
113,107 - EX31_RS17780 0.52 -1.4
113,107 - EX31_RS17780 0.52 +0.2
113,107 - EX31_RS17780 0.52 -0.6
113,107 - EX31_RS17780 0.52 -0.4
113,107 - EX31_RS17780 0.52 +0.3
113,107 - EX31_RS17780 0.52 -0.5
113,107 - EX31_RS17780 0.52 +1.5
113,107 - EX31_RS17780 0.52 +0.9
113,108 + EX31_RS17780 0.52 -0.6
113,108 + EX31_RS17780 0.52 +1.7
113,109 - EX31_RS17780 0.52 +1.7
113,109 - EX31_RS17780 0.52 -1.1
113,316 + EX31_RS17780 0.75 +0.0
113,316 + EX31_RS17780 0.75 -1.1
113,316 + EX31_RS17780 0.75 +0.4
113,317 - EX31_RS17780 0.75 -2.3
113,317 - EX31_RS17780 0.75 -0.6
113,317 - EX31_RS17780 0.75 +0.7
113,330 + EX31_RS17780 0.77 -1.4
113,331 - EX31_RS17780 0.77 +1.7
113,409 - EX31_RS17780 0.86 +0.9
113,434 + EX31_RS17780 0.89 +0.2
113,435 - EX31_RS17780 0.89 -0.4
113,465 + -0.8
113,465 + +1.2
113,465 + +2.1
113,466 - +2.1
113,466 - +1.4
113,581 - +1.3
113,597 + +0.7

Or see this region's nucleotide sequence