Strain Fitness in Rahnella sp. WP5 around EX31_RS17445

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17435 and EX31_RS17440 overlap by 4 nucleotidesEX31_RS17440 and EX31_RS17445 are separated by 9 nucleotidesEX31_RS17445 and EX31_RS17450 are separated by 367 nucleotides EX31_RS17435: EX31_RS17435 - FGGY-family carbohydrate kinase, at 38,136 to 39,776 _RS17435 EX31_RS17440: EX31_RS17440 - SIS domain-containing protein, at 39,773 to 40,381 _RS17440 EX31_RS17445: EX31_RS17445 - PLP-dependent aminotransferase family protein, at 40,391 to 41,824 _RS17445 EX31_RS17450: EX31_RS17450 - ATP-independent periplasmic protein-refolding chaperone, at 42,192 to 42,701 _RS17450 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.461 kb on + strand, within EX31_RS17435at 39.461 kb on + strand, within EX31_RS17435at 39.461 kb on + strand, within EX31_RS17435at 39.542 kb on - strand, within EX31_RS17435at 39.609 kb on + strand, within EX31_RS17435at 39.683 kb on + strandat 39.690 kb on + strandat 39.690 kb on + strandat 39.690 kb on + strandat 39.690 kb on + strandat 39.691 kb on - strandat 39.691 kb on - strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.701 kb on + strandat 39.701 kb on + strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.702 kb on - strandat 39.712 kb on + strandat 39.713 kb on - strandat 39.713 kb on - strandat 39.726 kb on + strandat 39.727 kb on - strandat 39.744 kb on + strandat 39.821 kb on + strandat 39.821 kb on + strandat 39.821 kb on + strandat 39.822 kb on - strandat 39.822 kb on - strandat 39.835 kb on - strand, within EX31_RS17440at 39.843 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.865 kb on + strand, within EX31_RS17440at 39.866 kb on - strand, within EX31_RS17440at 39.866 kb on - strand, within EX31_RS17440at 39.866 kb on - strand, within EX31_RS17440at 39.866 kb on - strand, within EX31_RS17440at 39.866 kb on - strand, within EX31_RS17440at 39.867 kb on + strand, within EX31_RS17440at 39.867 kb on + strand, within EX31_RS17440at 39.867 kb on + strand, within EX31_RS17440at 39.868 kb on - strand, within EX31_RS17440at 39.868 kb on - strand, within EX31_RS17440at 39.868 kb on - strand, within EX31_RS17440at 39.958 kb on - strand, within EX31_RS17440at 39.995 kb on + strand, within EX31_RS17440at 39.996 kb on - strand, within EX31_RS17440at 40.036 kb on + strand, within EX31_RS17440at 40.036 kb on + strand, within EX31_RS17440at 40.037 kb on - strand, within EX31_RS17440at 40.228 kb on + strand, within EX31_RS17440at 40.228 kb on + strand, within EX31_RS17440at 40.228 kb on + strand, within EX31_RS17440at 40.229 kb on - strand, within EX31_RS17440at 40.288 kb on + strand, within EX31_RS17440at 40.288 kb on + strand, within EX31_RS17440at 40.288 kb on + strand, within EX31_RS17440at 40.289 kb on - strand, within EX31_RS17440at 40.471 kb on + strandat 40.472 kb on - strandat 40.478 kb on - strandat 40.608 kb on + strand, within EX31_RS17445at 40.726 kb on - strand, within EX31_RS17445at 40.756 kb on - strand, within EX31_RS17445at 40.822 kb on + strand, within EX31_RS17445at 40.823 kb on - strand, within EX31_RS17445at 40.833 kb on + strand, within EX31_RS17445at 40.834 kb on - strand, within EX31_RS17445at 40.834 kb on - strand, within EX31_RS17445at 40.834 kb on - strand, within EX31_RS17445at 40.959 kb on + strand, within EX31_RS17445at 40.972 kb on - strand, within EX31_RS17445at 40.972 kb on - strand, within EX31_RS17445at 40.972 kb on - strand, within EX31_RS17445at 40.973 kb on + strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.974 kb on - strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 40.999 kb on + strand, within EX31_RS17445at 41.000 kb on - strand, within EX31_RS17445at 41.000 kb on - strand, within EX31_RS17445at 41.177 kb on + strand, within EX31_RS17445at 41.178 kb on - strand, within EX31_RS17445at 41.204 kb on + strand, within EX31_RS17445at 41.205 kb on - strand, within EX31_RS17445at 41.205 kb on - strand, within EX31_RS17445at 41.205 kb on - strand, within EX31_RS17445at 41.205 kb on - strand, within EX31_RS17445at 41.256 kb on - strand, within EX31_RS17445at 41.256 kb on - strand, within EX31_RS17445at 41.256 kb on - strand, within EX31_RS17445at 41.299 kb on + strand, within EX31_RS17445at 41.300 kb on - strand, within EX31_RS17445at 41.300 kb on - strand, within EX31_RS17445at 41.300 kb on - strand, within EX31_RS17445at 41.300 kb on - strand, within EX31_RS17445at 41.300 kb on - strand, within EX31_RS17445at 41.329 kb on + strand, within EX31_RS17445at 41.330 kb on - strand, within EX31_RS17445at 41.344 kb on - strand, within EX31_RS17445at 41.577 kb on + strand, within EX31_RS17445at 41.578 kb on - strand, within EX31_RS17445at 41.609 kb on + strand, within EX31_RS17445at 41.609 kb on + strand, within EX31_RS17445at 41.610 kb on - strand, within EX31_RS17445at 41.610 kb on - strand, within EX31_RS17445at 41.626 kb on - strand, within EX31_RS17445at 41.679 kb on + strand, within EX31_RS17445at 41.679 kb on + strand, within EX31_RS17445at 41.680 kb on - strand, within EX31_RS17445at 41.726 kb on - strandat 41.726 kb on - strandat 41.726 kb on - strandat 41.733 kb on - strandat 41.733 kb on - strandat 41.733 kb on - strandat 41.824 kb on + strandat 41.825 kb on - strandat 41.869 kb on - strandat 41.869 kb on - strandat 41.901 kb on - strandat 41.901 kb on - strandat 41.940 kb on + strandat 41.964 kb on + strandat 41.966 kb on - strandat 41.966 kb on - strandat 41.986 kb on + strandat 42.042 kb on - strandat 42.042 kb on - strandat 42.095 kb on - strandat 42.110 kb on + strandat 42.113 kb on + strandat 42.113 kb on + strandat 42.114 kb on - strandat 42.114 kb on - strandat 42.191 kb on + strandat 42.192 kb on - strandat 42.192 kb on - strandat 42.197 kb on + strandat 42.327 kb on - strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.341 kb on + strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.342 kb on - strand, within EX31_RS17450at 42.518 kb on + strand, within EX31_RS17450at 42.545 kb on + strand, within EX31_RS17450at 42.545 kb on + strand, within EX31_RS17450at 42.545 kb on + strand, within EX31_RS17450at 42.545 kb on + strand, within EX31_RS17450at 42.579 kb on + strand, within EX31_RS17450at 42.579 kb on + strand, within EX31_RS17450at 42.580 kb on - strand, within EX31_RS17450at 42.580 kb on - strand, within EX31_RS17450at 42.699 kb on + strandat 42.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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39,461 + EX31_RS17435 0.81 -0.3
39,461 + EX31_RS17435 0.81 -0.8
39,461 + EX31_RS17435 0.81 -0.1
39,542 - EX31_RS17435 0.86 +0.3
39,609 + EX31_RS17435 0.90 +1.1
39,683 + -0.3
39,690 + -0.3
39,690 + -1.1
39,690 + -1.3
39,690 + +0.7
39,691 - -1.0
39,691 - +0.7
39,693 + +1.0
39,693 + +1.3
39,693 + -1.0
39,693 + -0.2
39,694 - +0.2
39,694 - +1.5
39,694 - +0.5
39,701 + +0.1
39,701 + +0.4
39,702 - -0.3
39,702 - -0.3
39,702 - -0.3
39,702 - +0.2
39,712 + +0.2
39,713 - +1.3
39,713 - -1.6
39,726 + +0.8
39,727 - +3.5
39,744 + +0.2
39,821 + +0.7
39,821 + -2.1
39,821 + +1.7
39,822 - -0.1
39,822 - -1.3
39,835 - EX31_RS17440 0.10 +0.9
39,843 + EX31_RS17440 0.11 +0.5
39,865 + EX31_RS17440 0.15 -0.3
39,865 + EX31_RS17440 0.15 -1.7
39,865 + EX31_RS17440 0.15 -0.1
39,865 + EX31_RS17440 0.15 -0.3
39,865 + EX31_RS17440 0.15 -1.0
39,865 + EX31_RS17440 0.15 -1.4
39,865 + EX31_RS17440 0.15 -1.3
39,865 + EX31_RS17440 0.15 +1.5
39,865 + EX31_RS17440 0.15 -0.4
39,865 + EX31_RS17440 0.15 -1.6
39,865 + EX31_RS17440 0.15 -0.5
39,865 + EX31_RS17440 0.15 +0.3
39,865 + EX31_RS17440 0.15 +0.7
39,866 - EX31_RS17440 0.15 +0.2
39,866 - EX31_RS17440 0.15 -0.3
39,866 - EX31_RS17440 0.15 +0.3
39,866 - EX31_RS17440 0.15 -1.4
39,866 - EX31_RS17440 0.15 -0.8
39,867 + EX31_RS17440 0.15 -0.8
39,867 + EX31_RS17440 0.15 -2.3
39,867 + EX31_RS17440 0.15 +1.0
39,868 - EX31_RS17440 0.16 -0.5
39,868 - EX31_RS17440 0.16 -0.5
39,868 - EX31_RS17440 0.16 -1.8
39,958 - EX31_RS17440 0.30 +0.6
39,995 + EX31_RS17440 0.36 +0.3
39,996 - EX31_RS17440 0.37 -0.3
40,036 + EX31_RS17440 0.43 -0.3
40,036 + EX31_RS17440 0.43 +0.2
40,037 - EX31_RS17440 0.43 -0.3
40,228 + EX31_RS17440 0.75 +0.7
40,228 + EX31_RS17440 0.75 +0.1
40,228 + EX31_RS17440 0.75 +1.7
40,229 - EX31_RS17440 0.75 +0.2
40,288 + EX31_RS17440 0.85 +0.3
40,288 + EX31_RS17440 0.85 +0.9
40,288 + EX31_RS17440 0.85 +0.5
40,289 - EX31_RS17440 0.85 +1.0
40,471 + -0.3
40,472 - -1.8
40,478 - +1.0
40,608 + EX31_RS17445 0.15 +0.7
40,726 - EX31_RS17445 0.23 +2.0
40,756 - EX31_RS17445 0.25 +1.7
40,822 + EX31_RS17445 0.30 +2.1
40,823 - EX31_RS17445 0.30 +1.2
40,833 + EX31_RS17445 0.31 -0.6
40,834 - EX31_RS17445 0.31 +2.7
40,834 - EX31_RS17445 0.31 -1.3
40,834 - EX31_RS17445 0.31 +1.3
40,959 + EX31_RS17445 0.40 -1.6
40,972 - EX31_RS17445 0.41 -0.3
40,972 - EX31_RS17445 0.41 +1.3
40,972 - EX31_RS17445 0.41 +0.2
40,973 + EX31_RS17445 0.41 +0.7
40,974 - EX31_RS17445 0.41 -0.6
40,974 - EX31_RS17445 0.41 +1.0
40,974 - EX31_RS17445 0.41 +1.7
40,974 - EX31_RS17445 0.41 +2.2
40,974 - EX31_RS17445 0.41 +0.2
40,974 - EX31_RS17445 0.41 -0.3
40,999 + EX31_RS17445 0.42 +0.5
40,999 + EX31_RS17445 0.42 +0.7
40,999 + EX31_RS17445 0.42 -1.3
40,999 + EX31_RS17445 0.42 +0.2
40,999 + EX31_RS17445 0.42 -0.4
40,999 + EX31_RS17445 0.42 +0.8
41,000 - EX31_RS17445 0.42 +1.2
41,000 - EX31_RS17445 0.42 -1.8
41,177 + EX31_RS17445 0.55 +3.3
41,178 - EX31_RS17445 0.55 -3.7
41,204 + EX31_RS17445 0.57 +0.7
41,205 - EX31_RS17445 0.57 +2.7
41,205 - EX31_RS17445 0.57 +0.4
41,205 - EX31_RS17445 0.57 +0.6
41,205 - EX31_RS17445 0.57 +1.5
41,256 - EX31_RS17445 0.60 +1.3
41,256 - EX31_RS17445 0.60 -0.3
41,256 - EX31_RS17445 0.60 +1.2
41,299 + EX31_RS17445 0.63 +0.0
41,300 - EX31_RS17445 0.63 -0.8
41,300 - EX31_RS17445 0.63 -0.7
41,300 - EX31_RS17445 0.63 -0.1
41,300 - EX31_RS17445 0.63 +0.4
41,300 - EX31_RS17445 0.63 +1.3
41,329 + EX31_RS17445 0.65 -0.3
41,330 - EX31_RS17445 0.65 +0.5
41,344 - EX31_RS17445 0.66 +1.0
41,577 + EX31_RS17445 0.83 -0.8
41,578 - EX31_RS17445 0.83 -1.3
41,609 + EX31_RS17445 0.85 +0.0
41,609 + EX31_RS17445 0.85 -1.8
41,610 - EX31_RS17445 0.85 +0.4
41,610 - EX31_RS17445 0.85 +0.1
41,626 - EX31_RS17445 0.86 -1.3
41,679 + EX31_RS17445 0.90 -0.1
41,679 + EX31_RS17445 0.90 +0.3
41,680 - EX31_RS17445 0.90 -0.3
41,726 - +0.7
41,726 - +0.7
41,726 - -0.3
41,733 - -1.4
41,733 - +0.7
41,733 - +2.7
41,824 + -2.3
41,825 - +0.7
41,869 - -2.6
41,869 - +0.3
41,901 - +0.0
41,901 - -1.1
41,940 + -0.3
41,964 + +0.5
41,966 - +2.1
41,966 - +0.7
41,986 + +2.7
42,042 - +2.1
42,042 - -2.7
42,095 - +0.7
42,110 + +0.7
42,113 + -0.1
42,113 + +0.3
42,114 - +0.9
42,114 - -0.2
42,191 + +1.3
42,192 - -0.4
42,192 - +0.5
42,197 + +0.7
42,327 - EX31_RS17450 0.26 +1.3
42,341 + EX31_RS17450 0.29 +1.7
42,341 + EX31_RS17450 0.29 +0.2
42,341 + EX31_RS17450 0.29 -0.3
42,341 + EX31_RS17450 0.29 -1.0
42,341 + EX31_RS17450 0.29 +0.2
42,341 + EX31_RS17450 0.29 -0.4
42,341 + EX31_RS17450 0.29 +2.2
42,342 - EX31_RS17450 0.29 +0.1
42,342 - EX31_RS17450 0.29 -3.0
42,342 - EX31_RS17450 0.29 -0.3
42,342 - EX31_RS17450 0.29 +0.7
42,342 - EX31_RS17450 0.29 +0.1
42,342 - EX31_RS17450 0.29 +0.5
42,342 - EX31_RS17450 0.29 +0.0
42,342 - EX31_RS17450 0.29 -2.1
42,518 + EX31_RS17450 0.64 -1.3
42,545 + EX31_RS17450 0.69 +0.2
42,545 + EX31_RS17450 0.69 +3.3
42,545 + EX31_RS17450 0.69 -0.6
42,545 + EX31_RS17450 0.69 +1.3
42,579 + EX31_RS17450 0.76 +1.7
42,579 + EX31_RS17450 0.76 +0.4
42,580 - EX31_RS17450 0.76 +1.7
42,580 - EX31_RS17450 0.76 +0.4
42,699 + +0.6
42,754 - +0.5

Or see this region's nucleotide sequence