Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24995 and EX31_RS25525 are separated by 485 nucleotides EX31_RS25525 and EX31_RS17275 are separated by 82 nucleotides EX31_RS17275 and EX31_RS17280 are separated by 111 nucleotides EX31_RS17280 and EX31_RS17285 are separated by 136 nucleotides
EX31_RS24995: EX31_RS24995 - hypothetical protein, at 4,099 to 4,596
_RS24995
EX31_RS25525: EX31_RS25525 - isochorismatase family protein, at 5,082 to 5,222
_RS25525
EX31_RS17275: EX31_RS17275 - DUF72 domain-containing protein, at 5,305 to 6,123
_RS17275
EX31_RS17280: EX31_RS17280 - membrane protein, at 6,235 to 6,630
_RS17280
EX31_RS17285: EX31_RS17285 - carboxy-S-adenosyl-L-methionine synthase CmoA, at 6,767 to 7,510
_RS17285
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.320 kb on - strand, within EX31_RS24995 at 4.323 kb on + strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.324 kb on - strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.332 kb on + strand, within EX31_RS24995 at 4.333 kb on - strand, within EX31_RS24995 at 4.333 kb on - strand, within EX31_RS24995 at 4.335 kb on - strand, within EX31_RS24995 at 4.335 kb on - strand, within EX31_RS24995 at 4.375 kb on - strand, within EX31_RS24995 at 4.437 kb on + strand, within EX31_RS24995 at 4.437 kb on + strand, within EX31_RS24995 at 4.438 kb on - strand, within EX31_RS24995 at 4.438 kb on - strand, within EX31_RS24995 at 4.444 kb on + strand, within EX31_RS24995 at 4.444 kb on + strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.445 kb on - strand, within EX31_RS24995 at 4.459 kb on + strand, within EX31_RS24995 at 4.459 kb on + strand, within EX31_RS24995 at 4.460 kb on - strand, within EX31_RS24995 at 4.460 kb on - strand, within EX31_RS24995 at 4.461 kb on + strand, within EX31_RS24995 at 4.461 kb on + strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.462 kb on - strand, within EX31_RS24995 at 4.505 kb on - strand, within EX31_RS24995 at 4.524 kb on + strand, within EX31_RS24995 at 4.547 kb on - strand at 4.567 kb on + strand at 4.567 kb on + strand at 4.568 kb on - strand at 4.568 kb on - strand at 4.568 kb on - strand at 4.695 kb on - strand at 4.695 kb on - strand at 4.737 kb on + strand at 4.784 kb on + strand at 4.852 kb on - strand at 4.879 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.883 kb on - strand at 4.883 kb on - strand at 4.883 kb on - strand at 4.917 kb on + strand at 4.918 kb on - strand at 4.922 kb on - strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.973 kb on - strand at 4.974 kb on + strand at 4.975 kb on - strand at 5.013 kb on + strand at 5.014 kb on - strand at 5.037 kb on + strand at 5.038 kb on - strand at 5.038 kb on - strand at 5.040 kb on + strand at 5.040 kb on + strand at 5.040 kb on + strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.041 kb on - strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.047 kb on + strand at 5.048 kb on - strand at 5.051 kb on + strand at 5.052 kb on - strand at 5.060 kb on + strand at 5.060 kb on + strand at 5.061 kb on - strand at 5.061 kb on - strand at 5.074 kb on + strand at 5.074 kb on + strand at 5.074 kb on + strand at 5.077 kb on + strand at 5.077 kb on + strand at 5.078 kb on - strand at 5.078 kb on - strand at 5.082 kb on - strand at 5.357 kb on + strand at 5.357 kb on + strand at 5.357 kb on + strand at 5.406 kb on + strand, within EX31_RS17275 at 5.458 kb on - strand, within EX31_RS17275 at 5.554 kb on + strand, within EX31_RS17275 at 5.992 kb on + strand, within EX31_RS17275 at 5.993 kb on - strand, within EX31_RS17275 at 5.993 kb on - strand, within EX31_RS17275 at 6.007 kb on - strand, within EX31_RS17275 at 6.121 kb on + strand at 6.122 kb on - strand at 6.128 kb on - strand at 6.248 kb on + strand at 6.249 kb on - strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.250 kb on + strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.251 kb on - strand at 6.316 kb on + strand, within EX31_RS17280 at 6.346 kb on + strand, within EX31_RS17280 at 6.347 kb on - strand, within EX31_RS17280 at 6.354 kb on - strand, within EX31_RS17280 at 6.365 kb on + strand, within EX31_RS17280 at 6.365 kb on + strand, within EX31_RS17280 at 6.365 kb on + strand, within EX31_RS17280 at 6.366 kb on - strand, within EX31_RS17280 at 6.371 kb on + strand, within EX31_RS17280 at 6.386 kb on + strand, within EX31_RS17280 at 6.386 kb on + strand, within EX31_RS17280 at 6.391 kb on + strand, within EX31_RS17280 at 6.392 kb on - strand, within EX31_RS17280 at 6.411 kb on - strand, within EX31_RS17280 at 6.411 kb on - strand, within EX31_RS17280 at 6.421 kb on + strand, within EX31_RS17280 at 6.421 kb on + strand, within EX31_RS17280 at 6.421 kb on + strand, within EX31_RS17280 at 6.421 kb on + strand, within EX31_RS17280 at 6.421 kb on + strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.422 kb on - strand, within EX31_RS17280 at 6.423 kb on + strand, within EX31_RS17280 at 6.423 kb on + strand, within EX31_RS17280 at 6.424 kb on - strand, within EX31_RS17280 at 6.455 kb on + strand, within EX31_RS17280 at 6.456 kb on - strand, within EX31_RS17280 at 6.456 kb on - strand, within EX31_RS17280 at 6.456 kb on - strand, within EX31_RS17280 at 6.499 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.556 kb on + strand, within EX31_RS17280 at 6.557 kb on - strand, within EX31_RS17280 at 6.557 kb on - strand, within EX31_RS17280 at 6.557 kb on - strand, within EX31_RS17280 at 6.557 kb on - strand, within EX31_RS17280 at 6.557 kb on - strand, within EX31_RS17280 at 6.558 kb on + strand, within EX31_RS17280 at 6.558 kb on + strand, within EX31_RS17280 at 6.559 kb on - strand, within EX31_RS17280 at 6.559 kb on - strand, within EX31_RS17280 at 6.559 kb on - strand, within EX31_RS17280 at 6.559 kb on - strand, within EX31_RS17280 at 6.588 kb on + strand, within EX31_RS17280 at 6.588 kb on + strand, within EX31_RS17280 at 6.588 kb on + strand, within EX31_RS17280 at 6.588 kb on + strand, within EX31_RS17280 at 6.589 kb on - strand, within EX31_RS17280 at 6.589 kb on - strand, within EX31_RS17280 at 6.591 kb on + strand at 6.591 kb on + strand at 6.591 kb on + strand at 6.591 kb on + strand at 6.591 kb on + strand at 6.592 kb on - strand at 6.592 kb on - strand at 6.595 kb on + strand at 6.595 kb on + strand at 6.596 kb on - strand at 6.596 kb on - strand at 6.596 kb on - strand at 6.596 kb on - strand at 6.691 kb on + strand at 6.707 kb on + strand at 6.708 kb on - strand at 6.736 kb on - strand at 6.799 kb on + strand at 6.799 kb on + strand at 6.799 kb on + strand at 6.800 kb on - strand at 6.800 kb on - strand at 6.800 kb on - strand at 6.800 kb on - strand at 6.801 kb on + strand at 6.801 kb on + strand at 6.801 kb on + strand at 6.801 kb on + strand at 6.801 kb on + strand at 6.802 kb on - strand at 6.802 kb on - strand at 6.802 kb on - strand at 6.802 kb on - strand at 6.805 kb on + strand at 6.805 kb on + strand at 6.805 kb on + strand at 6.805 kb on + strand at 6.805 kb on + strand at 6.806 kb on - strand at 6.806 kb on - strand at 6.806 kb on - strand at 6.806 kb on - strand at 6.892 kb on + strand, within EX31_RS17285 at 6.947 kb on + strand, within EX31_RS17285 at 6.947 kb on + strand, within EX31_RS17285 at 6.947 kb on + strand, within EX31_RS17285 at 6.947 kb on + strand, within EX31_RS17285 at 6.948 kb on - strand, within EX31_RS17285 at 6.994 kb on + strand, within EX31_RS17285 at 7.000 kb on + strand, within EX31_RS17285
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,320 - EX31_RS24995 0.44 -0.4 4,323 + EX31_RS24995 0.45 +1.3 4,324 - EX31_RS24995 0.45 -0.0 4,324 - EX31_RS24995 0.45 -0.3 4,324 - EX31_RS24995 0.45 +0.2 4,332 + EX31_RS24995 0.47 +2.9 4,332 + EX31_RS24995 0.47 +0.7 4,332 + EX31_RS24995 0.47 -2.4 4,332 + EX31_RS24995 0.47 -0.4 4,333 - EX31_RS24995 0.47 +0.5 4,333 - EX31_RS24995 0.47 +0.1 4,335 - EX31_RS24995 0.47 +1.5 4,335 - EX31_RS24995 0.47 -0.3 4,375 - EX31_RS24995 0.55 -1.6 4,437 + EX31_RS24995 0.68 +0.0 4,437 + EX31_RS24995 0.68 +0.7 4,438 - EX31_RS24995 0.68 -1.1 4,438 - EX31_RS24995 0.68 +0.3 4,444 + EX31_RS24995 0.69 +0.3 4,444 + EX31_RS24995 0.69 +1.3 4,445 - EX31_RS24995 0.69 +0.7 4,445 - EX31_RS24995 0.69 -0.2 4,445 - EX31_RS24995 0.69 -0.4 4,459 + EX31_RS24995 0.72 -0.3 4,459 + EX31_RS24995 0.72 +1.1 4,460 - EX31_RS24995 0.72 +2.3 4,460 - EX31_RS24995 0.72 +1.7 4,461 + EX31_RS24995 0.73 -1.3 4,461 + EX31_RS24995 0.73 +0.5 4,462 - EX31_RS24995 0.73 -0.7 4,462 - EX31_RS24995 0.73 -0.3 4,462 - EX31_RS24995 0.73 +0.7 4,505 - EX31_RS24995 0.82 +1.7 4,524 + EX31_RS24995 0.85 +0.5 4,547 - -0.7 4,567 + -0.7 4,567 + +0.2 4,568 - -1.6 4,568 - +1.3 4,568 - +1.7 4,695 - +0.2 4,695 - -0.5 4,737 + -0.6 4,784 + -0.6 4,852 - +2.1 4,879 + -0.1 4,882 + +0.7 4,882 + +2.0 4,883 - +0.8 4,883 - +0.4 4,883 - -0.1 4,917 + +0.7 4,918 - -1.8 4,922 - +1.1 4,972 + +0.4 4,972 + -0.4 4,972 + -1.6 4,972 + +1.2 4,972 + +0.9 4,972 + +1.2 4,972 + +0.7 4,973 - -0.3 4,973 - -0.8 4,973 - -0.5 4,973 - +0.4 4,973 - -0.6 4,974 + -0.3 4,975 - +0.2 5,013 + +1.6 5,014 - +0.5 5,037 + -0.6 5,038 - -0.8 5,038 - +0.4 5,040 + +0.6 5,040 + -0.1 5,040 + -1.7 5,041 - +0.5 5,041 - +1.2 5,041 - -0.3 5,041 - +0.4 5,044 + -0.3 5,044 + +0.0 5,044 + -0.3 5,044 + -0.6 5,044 + +0.7 5,044 + +1.2 5,044 + -0.6 5,044 + -0.6 5,045 - -0.1 5,045 - +0.5 5,045 - -0.3 5,045 - +0.3 5,047 + +0.7 5,047 + -0.1 5,047 + -0.5 5,047 + +0.7 5,048 - -1.0 5,051 + +0.6 5,052 - -1.0 5,060 + +0.3 5,060 + +0.2 5,061 - -0.3 5,061 - -1.4 5,074 + -1.1 5,074 + -0.6 5,074 + +1.6 5,077 + -2.4 5,077 + -0.1 5,078 - +1.6 5,078 - -0.3 5,082 - +0.3 5,357 + +0.7 5,357 + -1.1 5,357 + +0.5 5,406 + EX31_RS17275 0.12 +1.2 5,458 - EX31_RS17275 0.19 -0.3 5,554 + EX31_RS17275 0.30 +2.2 5,992 + EX31_RS17275 0.84 +2.5 5,993 - EX31_RS17275 0.84 +0.1 5,993 - EX31_RS17275 0.84 -0.8 6,007 - EX31_RS17275 0.86 +1.7 6,121 + -0.3 6,122 - +0.7 6,128 - +0.7 6,248 + +2.1 6,249 - -3.1 6,250 + -0.4 6,250 + +0.0 6,250 + -0.1 6,250 + -1.6 6,250 + +1.5 6,250 + -1.0 6,250 + -1.3 6,250 + -1.3 6,250 + +0.1 6,251 - -0.3 6,251 - -0.3 6,251 - +1.4 6,251 - +0.7 6,251 - +1.1 6,251 - +0.5 6,251 - +0.0 6,251 - +2.0 6,251 - +1.3 6,251 - -0.0 6,316 + EX31_RS17280 0.20 +0.2 6,346 + EX31_RS17280 0.28 -0.6 6,347 - EX31_RS17280 0.28 +1.2 6,354 - EX31_RS17280 0.30 -1.6 6,365 + EX31_RS17280 0.33 -0.6 6,365 + EX31_RS17280 0.33 +1.1 6,365 + EX31_RS17280 0.33 -0.7 6,366 - EX31_RS17280 0.33 +0.1 6,371 + EX31_RS17280 0.34 -0.3 6,386 + EX31_RS17280 0.38 +0.3 6,386 + EX31_RS17280 0.38 -0.4 6,391 + EX31_RS17280 0.39 +2.2 6,392 - EX31_RS17280 0.40 -0.7 6,411 - EX31_RS17280 0.44 -1.3 6,411 - EX31_RS17280 0.44 -0.6 6,421 + EX31_RS17280 0.47 +0.2 6,421 + EX31_RS17280 0.47 -0.6 6,421 + EX31_RS17280 0.47 -1.2 6,421 + EX31_RS17280 0.47 +1.2 6,421 + EX31_RS17280 0.47 +0.0 6,422 - EX31_RS17280 0.47 -0.6 6,422 - EX31_RS17280 0.47 +1.2 6,422 - EX31_RS17280 0.47 -0.0 6,422 - EX31_RS17280 0.47 -0.4 6,422 - EX31_RS17280 0.47 -0.3 6,422 - EX31_RS17280 0.47 -1.3 6,423 + EX31_RS17280 0.47 -0.9 6,423 + EX31_RS17280 0.47 +0.6 6,424 - EX31_RS17280 0.48 -1.5 6,455 + EX31_RS17280 0.56 -1.3 6,456 - EX31_RS17280 0.56 +1.2 6,456 - EX31_RS17280 0.56 -2.1 6,456 - EX31_RS17280 0.56 -0.8 6,499 + EX31_RS17280 0.67 +0.2 6,556 + EX31_RS17280 0.81 -3.3 6,556 + EX31_RS17280 0.81 +1.1 6,556 + EX31_RS17280 0.81 +0.7 6,556 + EX31_RS17280 0.81 -3.7 6,556 + EX31_RS17280 0.81 +0.0 6,556 + EX31_RS17280 0.81 -0.5 6,556 + EX31_RS17280 0.81 -0.8 6,556 + EX31_RS17280 0.81 +0.1 6,556 + EX31_RS17280 0.81 +0.7 6,556 + EX31_RS17280 0.81 +1.2 6,557 - EX31_RS17280 0.81 +0.0 6,557 - EX31_RS17280 0.81 -1.6 6,557 - EX31_RS17280 0.81 -1.1 6,557 - EX31_RS17280 0.81 -1.8 6,557 - EX31_RS17280 0.81 +0.2 6,558 + EX31_RS17280 0.82 +0.9 6,558 + EX31_RS17280 0.82 -1.0 6,559 - EX31_RS17280 0.82 -0.3 6,559 - EX31_RS17280 0.82 -0.3 6,559 - EX31_RS17280 0.82 +0.1 6,559 - EX31_RS17280 0.82 -0.8 6,588 + EX31_RS17280 0.89 +0.7 6,588 + EX31_RS17280 0.89 +0.1 6,588 + EX31_RS17280 0.89 +0.7 6,588 + EX31_RS17280 0.89 -0.6 6,589 - EX31_RS17280 0.89 +1.3 6,589 - EX31_RS17280 0.89 -0.7 6,591 + +1.3 6,591 + +1.3 6,591 + -1.3 6,591 + +1.7 6,591 + -1.4 6,592 - -0.3 6,592 - +0.3 6,595 + +0.7 6,595 + -0.8 6,596 - -1.8 6,596 - +1.5 6,596 - -0.4 6,596 - -1.4 6,691 + -0.3 6,707 + +0.0 6,708 - -0.8 6,736 - +1.5 6,799 + +0.5 6,799 + +0.7 6,799 + +1.3 6,800 - -0.8 6,800 - -0.8 6,800 - +0.2 6,800 - -0.3 6,801 + +1.3 6,801 + -1.6 6,801 + -0.3 6,801 + +2.3 6,801 + +0.3 6,802 - +0.0 6,802 - +2.3 6,802 - -1.3 6,802 - +0.7 6,805 + +1.7 6,805 + +0.7 6,805 + -0.6 6,805 + +0.2 6,805 + +0.2 6,806 - +0.4 6,806 - -0.3 6,806 - -1.8 6,806 - +2.1 6,892 + EX31_RS17285 0.17 -0.8 6,947 + EX31_RS17285 0.24 +0.5 6,947 + EX31_RS17285 0.24 -0.3 6,947 + EX31_RS17285 0.24 +0.7 6,947 + EX31_RS17285 0.24 -0.3 6,948 - EX31_RS17285 0.24 -0.3 6,994 + EX31_RS17285 0.31 -0.1 7,000 + EX31_RS17285 0.31 +0.3
Or see this region's nucleotide sequence