Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16715 and EX31_RS16720 are separated by 261 nucleotides EX31_RS16720 and EX31_RS16725 are separated by 161 nucleotides
EX31_RS16715: EX31_RS16715 - ATP-binding cassette domain-containing protein, at 25,436 to 26,530
_RS16715
EX31_RS16720: EX31_RS16720 - helix-turn-helix domain-containing protein, at 26,792 to 27,640
_RS16720
EX31_RS16725: EX31_RS16725 - phytanoyl-CoA dioxygenase, at 27,802 to 28,569
_RS16725
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.798 kb on + strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.961 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 26.177 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.298 kb on - strand, within EX31_RS16715 at 26.438 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.441 kb on - strand at 26.511 kb on - strand at 26.604 kb on - strand at 26.613 kb on + strand at 26.884 kb on - strand, within EX31_RS16720 at 26.956 kb on + strand, within EX31_RS16720 at 27.103 kb on + strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.106 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.273 kb on - strand, within EX31_RS16720 at 27.433 kb on + strand, within EX31_RS16720 at 27.434 kb on - strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.677 kb on - strand at 27.677 kb on - strand at 27.738 kb on - strand at 27.870 kb on + strand at 27.870 kb on + strand at 27.871 kb on - strand at 27.871 kb on - strand at 27.908 kb on + strand, within EX31_RS16725 at 27.909 kb on - strand, within EX31_RS16725 at 28.273 kb on - strand, within EX31_RS16725 at 28.471 kb on - strand, within EX31_RS16725 at 28.517 kb on - strand at 28.548 kb on - strand at 28.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 25,798 + EX31_RS16715 0.33 -0.5 25,856 - EX31_RS16715 0.38 -0.5 25,856 - EX31_RS16715 0.38 +0.2 25,856 - EX31_RS16715 0.38 +1.7 25,856 - EX31_RS16715 0.38 -0.1 25,961 - EX31_RS16715 0.48 -0.5 25,964 - EX31_RS16715 0.48 -1.8 25,964 - EX31_RS16715 0.48 +2.6 26,177 + EX31_RS16715 0.68 +0.1 26,292 + EX31_RS16715 0.78 +1.1 26,292 + EX31_RS16715 0.78 +0.5 26,298 - EX31_RS16715 0.79 -0.4 26,438 - +1.5 26,441 - +0.5 26,441 - -1.8 26,441 - +2.3 26,441 - +2.2 26,441 - +1.0 26,511 - +0.3 26,604 - +2.1 26,613 + +0.8 26,884 - EX31_RS16720 0.11 -0.7 26,956 + EX31_RS16720 0.19 +2.5 27,103 + EX31_RS16720 0.37 +1.5 27,104 - EX31_RS16720 0.37 -2.5 27,104 - EX31_RS16720 0.37 -2.3 27,106 - EX31_RS16720 0.37 -0.8 27,186 - EX31_RS16720 0.46 -3.0 27,186 - EX31_RS16720 0.46 -0.5 27,273 - EX31_RS16720 0.57 -1.1 27,433 + EX31_RS16720 0.76 +1.8 27,434 - EX31_RS16720 0.76 -0.2 27,435 + EX31_RS16720 0.76 -0.1 27,435 + EX31_RS16720 0.76 -0.7 27,436 - EX31_RS16720 0.76 -1.1 27,436 - EX31_RS16720 0.76 -0.2 27,436 - EX31_RS16720 0.76 +0.5 27,677 - +0.5 27,677 - -0.4 27,738 - +0.2 27,870 + -1.1 27,870 + +1.1 27,871 - -0.7 27,871 - +0.5 27,908 + EX31_RS16725 0.14 +1.7 27,909 - EX31_RS16725 0.14 -1.1 28,273 - EX31_RS16725 0.61 +0.5 28,471 - EX31_RS16725 0.87 +1.2 28,517 - -0.5 28,548 - +1.9 28,602 + +1.0
Or see this region's nucleotide sequence